Clone Information

BLAST Search Result

Clone Name	rbags26i18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009248.1\| Triticum aestivum clone wlk1.pk0025.e2:fis, full ...	521	e-145
2	gb\|AY105904.1\| Zea mays PCO126705 mRNA sequence	220	4e-54
3	ref\|XM_549860.1\| Oryza sativa (japonica cultivar-group), mRNA	196	6e-47
4	dbj\|AK071405.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	6e-47
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
6	dbj\|AP002845.3\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
7	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	44	0.57
8	emb\|AL391123.19\| Human DNA sequence from clone RP11-184L18 on ch...	42	2.2
9	emb\|AL353717.13\| Human DNA sequence from clone RP11-562M8 on chr...	42	2.2
10	gb\|AY170316.1\| Porcine lymphotropic herpesvirus 3 isolate 489 lo...	42	2.2
11	gb\|AC015553.21\|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell ...	42	2.2
12	gb\|AC079997.6\| Homo sapiens BAC clone RP11-748B21 from 2, comple...	42	2.2
13	emb\|AL157955.5\|CNS01RGE Human chromosome 14 DNA sequence BAC R-3...	42	2.2
14	emb\|AL359238.4\|CNS05TEP Human chromosome 14 DNA sequence BAC R-4...	42	2.2
15	emb\|AL831731.6\| Mouse DNA sequence from clone RP23-442K11 on chr...	42	2.2
16	emb\|BX088567.6\| Mouse DNA sequence from clone RP23-21L20 on chro...	42	2.2
17	gb\|AC091815.7\| Homo sapiens 12p BAC RP11-319K17 (Roswell Park Ca...	42	2.2
18	gb\|AC153740.3\| Colobus guereza clone CH272-157M1, complete sequence	40	8.9
19	gb\|AY433117.1\| Aedes aegypti ASAP ID: 36447 vesicular transmembr...	40	8.9
20	gb\|AC008348.5\| Drosophila melanogaster clone BACR02I11, complete...	40	8.9
21	gb\|AC005714.11\| Drosophila melanogaster clone BACR48M13, complet...	40	8.9
22	gb\|AC107720.16\| Mus musculus chromosome 5, clone RP23-188F20, co...	40	8.9
23	gb\|AY552062.1\| Aedes aegypti putative coated vesicle membrane pr...	40	8.9
24	gb\|AC170739.3\| Sorex araneus clone SA_Ba-515F19, complete sequence	40	8.9
25	gb\|AC132602.2\| Mus musculus BAC clone RP23-477C13 from chromosom...	40	8.9
26	ref\|XM_449941.1\| Candida glabrata CBS138 hypothetical protein (C...	40	8.9
27	gb\|AC126268.3\| Mus musculus BAC clone RP23-227O11 from chromosom...	40	8.9
28	gb\|AC129290.4\| Mus musculus BAC clone RP24-489L4 from chromosome...	40	8.9
29	gb\|AC149269.11\| Medicago truncatula clone mth2-102b19, complete ...	40	8.9
30	emb\|BX322532.2\| Human DNA sequence from clone RP11-543A11 on chr...	40	8.9
31	emb\|CR380959.1\| Candida glabrata strain CBS138 chromosome M comp...	40	8.9
32	gb\|AC124045.2\| Homo sapiens chromosome 3 clone RP11-348P10, comp...	40	8.9
33	gb\|AC170743.3\| Sorex araneus clone SA_Ba-619E1, complete sequence	40	8.9
34	gb\|AC092046.2\| Homo sapiens chromosome 3 clone RP11-189H19, comp...	40	8.9
35	gb\|AC090999.1\| Caenorhabditis elegans cosmid Y82E9BR, complete s...	40	8.9
36	gb\|AC153020.5\| Mus musculus BAC clone RP23-88P1 from chromosome ...	40	8.9
37	gb\|AC017109.5\| Homo sapiens chromosome 4 clone RP11-568O24, comp...	40	8.9
38	gb\|AC154255.2\| Mus musculus BAC clone RP24-202K20 from chromosom...	40	8.9
39	gb\|AC140285.4\| Mus musculus BAC clone RP24-559A5 from chromosome...	40	8.9
40	gb\|AC158782.5\| Mus musculus chromosome 5, clone RP23-134H19, com...	40	8.9
41	gb\|AC109506.21\| Mus musculus chromosome 7, clone RP23-344G21, co...	40	8.9
42	gb\|AC092159.4\| Homo sapiens BAC clone RP11-455F15 from 2, comple...	40	8.9
43	gb\|AC090676.11\| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Can...	40	8.9
44	gb\|AC095350.8\| Homo sapiens 12 BAC RP11-662M24 (Roswell Park Can...	40	8.9
45	gb\|AE003457.4\| Drosophila melanogaster chromosome 2R, section 65...	40	8.9

>gb|BT009248.1| Triticum aestivum clone wlk1.pk0025.e2:fis, full insert mRNA sequence
          Length = 1924

 Score =  521 bits (263), Expect = e-145
 Identities = 287/294 (97%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                        
Query: 359  ggacagaatt-aactactcagtccatgtagcgcccaacatctttgacataaaactgtaac 417
            |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1624 ggacagaattgaactactcagtccatgtagcgcccaacatcttcgacataaaactgtaac 1565

                                                                        
Query: 418  ggtccgcagcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 477
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ggtccgcggcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 1505

                                                                        
Query: 478  ggtcaatgcggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 537
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 ggtcaatgcgaccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 1445

                                                                        
Query: 538  catgttgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatnatgat 597
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1444 catgctgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatgat 1385

                                                                  
Query: 598  cagctgtcaacagcatggttgctggatattgacaattatcaccaaagctttgct 651
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1384 cagctgtcaacagcatggttgctggatactgacaattatcaccaaagctttgct 1331



 Score =  262 bits (132), Expect = 1e-66
 Identities = 205/228 (89%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   ggccaggctgagcctatagactaaatcattccagccagaccgcttcattggtccatttca 129
            ||||||||||||| |   ||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1860 ggccaggctgagcgtcctgactaaatcgttccagccagacagcttcattggtccatttca 1801

                                                                        
Query: 130  agtttccaacaatatttttctaagcagaaacacacaccc-ttccacatatggaagaatat 188
            ||||| |||||  |||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 1800 agttttcaacagcatttttctaagcagaaacacacacccctttcacatacggaagaatat 1741

                                                                        
Query: 189  ataggctcgggtaagcttgcaccacacaaacattggaagtgttgtcaacttcaaagagtt 248
            |||||||| | ||||||||||| ||||| |||||| ||||||||| | ||||||||| ||
Sbjct: 1740 ataggctccgataagcttgcacaacacagacattgtaagtgttgtaagcttcaaagaatt 1681

                                                            
Query: 249  gtgatacttgaactcaaaaactgttcagcagctgaagcgataacaatc 296
            ||  |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1680 gtagtacttgaactcaaaaactgttcagcagctgaagcgatagcaatc 1633

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>gb|AY105904.1| Zea mays PCO126705 mRNA sequence
          Length = 2579

 Score =  220 bits (111), Expect = 4e-54
 Identities = 248/294 (84%)
 Strand = Plus / Minus

                                                                        
Query: 358  tggacagaattaactactcagtccatgtagcgcccaacatctttgacataaaactgtaac 417
            |||||| |||| |||| |||||||| | ||| || ||||| |||| |||||| || || |
Sbjct: 2288 tggacaaaattcactattcagtccacgaagcccctaacatttttgccataaagctatatc 2229

                                                                        
Query: 418  ggtccgcagcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 477
             ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||||||||| |
Sbjct: 2228 tgtctgcagcttcgtcaatcattttttgagttggcctgccagctccatgccctgacttcc 2169

                                                                        
Query: 478  ggtcaatgcggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 537
            | |||||||| ||||||||||| || ||||||||||||| |||| |||| || |||| ||
Sbjct: 2168 gatcaatgcgaccaattattggattcgtctgcgggctgtcctcagtgctggtacacagga 2109

                                                                        
Query: 538  catgttgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatnatgat 597
            |||| ||||  || || || |||||||| || ||||||||||||||||| || | |||||
Sbjct: 2108 catgctgcaaagttgctaataacttcagtgaatgcaatggcacaacacgatcgtcatgat 2049

                                                                  
Query: 598  cagctgtcaacagcatggttgctggatattgacaattatcaccaaagctttgct 651
            |||||||||||| ||||||||||||||| || || |||| |||| |||||||||
Sbjct: 2048 cagctgtcaacaacatggttgctggatactggcagttattaccagagctttgct 1995

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>ref|XM_549860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2639

 Score =  196 bits (99), Expect = 6e-47
 Identities = 179/206 (86%)
 Strand = Plus / Minus

                                                                        
Query: 427  cctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgcggtcaatgc 486
            |||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||||
Sbjct: 2261 cctcatcaatcatttttttagttggtctgccagctccatgccctgacttgacgtcaatgc 2202

                                                                        
Query: 487  ggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaagacatgttgca 546
            | ||||||||||| |||  ||| ||  | | |||||||||||||||||||||||  ||||
Sbjct: 2201 gaccaattattggattgacctgtggtgtatcctcaatgctagtgcacaagacatactgca 2142

                                                                        
Query: 547  ttgtagccaacaacttcagcgagtgcaatggcacaacacggtcatnatgatcagctgtca 606
             ||| || ||||||||||  |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 2141 gtgttgctaacaacttcaatgagtgcaatggcacaacacgatcatcatgatcagcagtca 2082

                                      
Query: 607  acagcatggttgctggatattgacaa 632
            |||||||| ||||||| || ||||||
Sbjct: 2081 acagcatgattgctgggtactgacaa 2056

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>dbj|AK071405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090K22, full
            insert sequence
          Length = 3375

 Score =  196 bits (99), Expect = 6e-47
 Identities = 179/206 (86%)
 Strand = Plus / Minus

                                                                        
Query: 427  cctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgcggtcaatgc 486
            |||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||||
Sbjct: 2997 cctcatcaatcatttttttagttggtctgccagctccatgccctgacttgacgtcaatgc 2938

                                                                        
Query: 487  ggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaagacatgttgca 546
            | ||||||||||| |||  ||| ||  | | |||||||||||||||||||||||  ||||
Sbjct: 2937 gaccaattattggattgacctgtggtgtatcctcaatgctagtgcacaagacatactgca 2878

                                                                        
Query: 547  ttgtagccaacaacttcagcgagtgcaatggcacaacacggtcatnatgatcagctgtca 606
             ||| || ||||||||||  |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 2877 gtgttgctaacaacttcaatgagtgcaatggcacaacacgatcatcatgatcagcagtca 2818

                                      
Query: 607  acagcatggttgctggatattgacaa 632
            |||||||| ||||||| || ||||||
Sbjct: 2817 acagcatgattgctgggtactgacaa 2792

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                          
Query: 440    ttttttagtcggcctgccagctccatgccctgacttgcggtcaatgcggccaattattgg 499
              ||||||||| || ||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 447776 ttttttagttggtctgccagctccatgccctgacttgacgtcaatgcgaccaattattgg 447717

                                                       
Query: 500    gttggtctgcgggctgttctcaatgctagtgcacaagacat 540
               |||  ||| ||  | | |||||||||||||||||||||||
Sbjct: 447716 attgacctgtggtgtatcctcaatgctagtgcacaagacat 447676



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                          
Query: 555    aacaacttcagcgagtgcaatggcacaacacggtcatnatgatcagctgtcaacagcatg 614
              ||||||||||  |||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 446465 aacaacttcaatgagtgcaatggcacaacacgatcatcatgatcagcagtcaacagcatg 446406

                                
Query: 615    gttgctggatattgacaa 632
               ||||||| || ||||||
Sbjct: 446405 attgctgggtactgacaa 446388

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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 440   ttttttagtcggcctgccagctccatgccctgacttgcggtcaatgcggccaattattgg 499
             ||||||||| || ||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 87977 ttttttagttggtctgccagctccatgccctgacttgacgtcaatgcgaccaattattgg 87918

                                                      
Query: 500   gttggtctgcgggctgttctcaatgctagtgcacaagacat 540
              |||  ||| ||  | | |||||||||||||||||||||||
Sbjct: 87917 attgacctgtggtgtatcctcaatgctagtgcacaagacat 87877



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 555   aacaacttcagcgagtgcaatggcacaacacggtcatnatgatcagctgtcaacagcatg 614
             ||||||||||  |||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 86666 aacaacttcaatgagtgcaatggcacaacacgatcatcatgatcagcagtcaacagcatg 86607

                               
Query: 615   gttgctggatattgacaa 632
              ||||||| || ||||||
Sbjct: 86606 attgctgggtactgacaa 86589

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 575   tggcacaacacggtcatnatgatca 599
             ||||||||||||||||| |||||||
Sbjct: 89428 tggcacaacacggtcatcatgatca 89452

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>emb|AL391123.19| Human DNA sequence from clone RP11-184L18 on chromosome 13 Contains a
             pseudogene similar to part of a novel protein (KIAA0802),
             complete sequence
          Length = 121496

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    caaaggaaataagaaaatacttaaa 35
             |||||||||||||||||| ||||||
Sbjct: 19949 caaaggaaataagaaaattcttaaa 19973

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>emb|AL353717.13| Human DNA sequence from clone RP11-562M8 on chromosome 9 Contains a
             novel pseudogene, a argininosuccinate synthetase (ASS)
             (CTLN1) pseudogene, the APTX gene for aprataxin, a
             transcription elongation factor A (SII), 1 pseudogene
             (GTF2SP) (TCEA1P) and 2 CpG islands, complete sequence
          Length = 120533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19550 cttccacatatggaagtatatatag 19574



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19515 cttccacatatggaagtatatatag 19539



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19480 cttccacatatggaagtatatatag 19504



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19445 cttccacatatggaagtatatatag 19469



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19410 cttccacatatggaagtatatatag 19434



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19375 cttccacatatggaagtatatatag 19399



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19340 cttccacatatggaagtatatatag 19364



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19305 cttccacatatggaagtatatatag 19329



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19270 cttccacatatggaagtatatatag 19294



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19235 cttccacatatggaagtatatatag 19259



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19200 cttccacatatggaagtatatatag 19224



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19165 cttccacatatggaagtatatatag 19189



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19130 cttccacatatggaagtatatatag 19154



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cttccacatatggaagaatatatag 192
             |||||||||||||||| ||||||||
Sbjct: 19095 cttccacatatggaagtatatatag 19119

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>gb|AY170316.1| Porcine lymphotropic herpesvirus 3 isolate 489 long unique region,
             partial sequence
          Length = 60326

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   caagtttccaacaatattttt 148
             |||||||||||||||||||||
Sbjct: 55632 caagtttccaacaatattttt 55612

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>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162063

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134259 cttccacatatggaagtatatatag 134283



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134224 cttccacatatggaagtatatatag 134248



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134189 cttccacatatggaagtatatatag 134213



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134154 cttccacatatggaagtatatatag 134178



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134119 cttccacatatggaagtatatatag 134143



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134084 cttccacatatggaagtatatatag 134108



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134049 cttccacatatggaagtatatatag 134073



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 134014 cttccacatatggaagtatatatag 134038



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133979 cttccacatatggaagtatatatag 134003



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133944 cttccacatatggaagtatatatag 133968



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133909 cttccacatatggaagtatatatag 133933



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133874 cttccacatatggaagtatatatag 133898



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133839 cttccacatatggaagtatatatag 133863



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133804 cttccacatatggaagtatatatag 133828



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133769 cttccacatatggaagtatatatag 133793



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133734 cttccacatatggaagtatatatag 133758



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133699 cttccacatatggaagtatatatag 133723



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133664 cttccacatatggaagtatatatag 133688



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133629 cttccacatatggaagtatatatag 133653



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133594 cttccacatatggaagtatatatag 133618



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133559 cttccacatatggaagtatatatag 133583



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 168    cttccacatatggaagaatatatag 192
              |||||||||||||||| ||||||||
Sbjct: 133524 cttccacatatggaagtatatatag 133548

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>gb|AC079997.6| Homo sapiens BAC clone RP11-748B21 from 2, complete sequence
          Length = 118577

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    ggaaataagaaaatacttaaa 35
             |||||||||||||||||||||
Sbjct: 34859 ggaaataagaaaatacttaaa 34879

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>emb|AL157955.5|CNS01RGE Human chromosome 14 DNA sequence BAC R-300J18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177169

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    gaaataagaaaatacttaaat 36
             |||||||||||||||||||||
Sbjct: 19531 gaaataagaaaatacttaaat 19551

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>emb|AL359238.4|CNS05TEP Human chromosome 14 DNA sequence BAC R-452D21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166870

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 626    ttgacaattatcaccaaagct 646
              |||||||||||||||||||||
Sbjct: 125164 ttgacaattatcaccaaagct 125144

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>emb|AL831731.6| Mouse DNA sequence from clone RP23-442K11 on chromosome 2, complete
              sequence
          Length = 165232

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    cagaaacacacacccttccac 174
              |||||||||||||||||||||
Sbjct: 127319 cagaaacacacacccttccac 127339

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>emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chromosome X, complete
             sequence
          Length = 150122

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    agaaaatacttaaatgagtat 42
             |||||||||||||||||||||
Sbjct: 39543 agaaaatacttaaatgagtat 39523

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>gb|AC091815.7| Homo sapiens 12p BAC RP11-319K17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169246

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     caaaggaaataagaaaatacttaaa 35
              |||||||||| ||||||||||||||
Sbjct: 150192 caaaggaaatgagaaaatacttaaa 150216

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>gb|AC153740.3| Colobus guereza clone CH272-157M1, complete sequence
          Length = 200890

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aagtttccaacaatattttt 148
             ||||||||||||||||||||
Sbjct: 27343 aagtttccaacaatattttt 27362

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>gb|AY433117.1| Aedes aegypti ASAP ID: 36447 vesicular transmembrane mRNA sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 tttccaacaatatttttcta 151
           ||||||||||||||||||||
Sbjct: 30  tttccaacaatatttttcta 49

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>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence
          Length = 191467

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    aaacacacacccttccacat 176
              ||||||||||||||||||||
Sbjct: 109525 aaacacacacccttccacat 109506

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>gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complete sequence
          Length = 177736

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aaacacacacccttccacat 176
             ||||||||||||||||||||
Sbjct: 15821 aaacacacacccttccacat 15802

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>gb|AC107720.16| Mus musculus chromosome 5, clone RP23-188F20, complete sequence
          Length = 206182

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   caacatctttgacataaaac 411
             ||||||||||||||||||||
Sbjct: 85028 caacatctttgacataaaac 85047

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>gb|AY552062.1| Aedes aegypti putative coated vesicle membrane protein mRNA,
           complete cds
          Length = 910

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 tttccaacaatatttttcta 151
           ||||||||||||||||||||
Sbjct: 60  tttccaacaatatttttcta 79

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>gb|AC170739.3| Sorex araneus clone SA_Ba-515F19, complete sequence
          Length = 101541

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aaataagaaaatacttaaat 36
             ||||||||||||||||||||
Sbjct: 95671 aaataagaaaatacttaaat 95652

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>gb|AC132602.2| Mus musculus BAC clone RP23-477C13 from chromosome 14, complete sequence
          Length = 194038

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     gaaataagaaaatacttaaa 35
              ||||||||||||||||||||
Sbjct: 133312 gaaataagaaaatacttaaa 133331

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>ref|XM_449941.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13739g) partial
            mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  tcaaagagttgtgatacttg 258
            ||||||||||||||||||||
Sbjct: 1060 tcaaagagttgtgatacttg 1041

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>gb|AC126268.3| Mus musculus BAC clone RP23-227O11 from chromosome 12, complete
             sequence
          Length = 201581

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaggaaataagaaaatact 31
             ||||||||||||||||||||
Sbjct: 17058 aaaggaaataagaaaatact 17039

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>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aaataagaaaatacttaaat 36
             ||||||||||||||||||||
Sbjct: 50464 aaataagaaaatacttaaat 50445

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>gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   gtgcacaagacatgttgcat 547
             ||||||||||||||||||||
Sbjct: 72262 gtgcacaagacatgttgcat 72281

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>emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ16613) and the
             5' end of one variant of the OPN3 gene for opsin 3
             (encephalopsin, panopsin), complete sequence
          Length = 40220

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 139   caatatttttctaagcagaaacacacac 166
             ||||||||||||||| ||||| ||||||
Sbjct: 37420 caatatttttctaagtagaaatacacac 37393

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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     tcaaagagttgtgatacttg 258
               ||||||||||||||||||||
Sbjct: 1347355 tcaaagagttgtgatacttg 1347374

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>gb|AC124045.2| Homo sapiens chromosome 3 clone RP11-348P10, complete sequence
          Length = 64966

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tgcaaaggaaataagaaaat 28
             ||||||||||||||||||||
Sbjct: 42575 tgcaaaggaaataagaaaat 42556

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>gb|AC170743.3| Sorex araneus clone SA_Ba-619E1, complete sequence
          Length = 147797

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aaataagaaaatacttaaat 36
             ||||||||||||||||||||
Sbjct: 27413 aaataagaaaatacttaaat 27394

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>gb|AC092046.2| Homo sapiens chromosome 3 clone RP11-189H19, complete sequence
          Length = 170486

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     tgcaaaggaaataagaaaat 28
             ||||||||||||||||||||
Sbjct: 20280 tgcaaaggaaataagaaaat 20299

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>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    atcaatcaattttttagtcg 450
              ||||||||||||||||||||
Sbjct: 110120 atcaatcaattttttagtcg 110101

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>gb|AC153020.5| Mus musculus BAC clone RP23-88P1 from chromosome 13, complete sequence
          Length = 200635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   tgggttggtctgcgggctgt 516
             ||||||||||||||||||||
Sbjct: 12010 tgggttggtctgcgggctgt 11991

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>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence
          Length = 195169

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    gaattaactactcagtccat 383
              ||||||||||||||||||||
Sbjct: 187786 gaattaactactcagtccat 187805

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>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence
          Length = 159755

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    tgggttggtctgcgggctgt 516
              ||||||||||||||||||||
Sbjct: 148754 tgggttggtctgcgggctgt 148735

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>gb|AC140285.4| Mus musculus BAC clone RP24-559A5 from chromosome 12, complete sequence
          Length = 170917

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     aaaggaaataagaaaatact 31
              ||||||||||||||||||||
Sbjct: 163141 aaaggaaataagaaaatact 163122

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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  caacatctttgacataaaac 411
            ||||||||||||||||||||
Sbjct: 4931 caacatctttgacataaaac 4912

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>gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, complete sequence
          Length = 227676

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   gtaagcttgcaccacacaaacatt 222
             |||||| |||||||||||||||||
Sbjct: 58066 gtaagcctgcaccacacaaacatt 58089

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>gb|AC092159.4| Homo sapiens BAC clone RP11-455F15 from 2, complete sequence
          Length = 82115

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     tgcaaaggaaataagaaaatactt 32
             |||||||||||| |||||||||||
Sbjct: 63513 tgcaaaggaaattagaaaatactt 63490

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>gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139802

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 358   tggacagaattaactactcagtcc 381
             ||||||||||||| ||||||||||
Sbjct: 20472 tggacagaattaattactcagtcc 20495

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>gb|AC095350.8| Homo sapiens 12 BAC RP11-662M24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 129055

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    cacatatggaagaatatataggct 195
              ||||||||||||||||||| ||||
Sbjct: 114340 cacatatggaagaatatatgggct 114363

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>gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65 of 73 of the complete
             sequence
          Length = 307324

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aaacacacacccttccacat 176
             ||||||||||||||||||||
Sbjct: 50824 aaacacacacccttccacat 50805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,357,246
Number of Sequences: 3902068
Number of extensions: 6357246
Number of successful extensions: 165214
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164963
Number of HSP's gapped (non-prelim): 246
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result