ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26i08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 809 0.0
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
5gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 270 4e-69
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
7ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
11gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.11
12gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.11
13gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.11
14gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.11
15gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, co... 44 0.44
16ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ... 42 1.8
17gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 1.8
18emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.8
19gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 1.8
20gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Canc... 42 1.8
21gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 1.8
22gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 6.9
23gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, com... 40 6.9
24gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, comple... 40 6.9
25gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, com... 40 6.9
26emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j... 40 6.9
27ref|XM_645152.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.9
28gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, compl... 40 6.9
29emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ... 40 6.9
30emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.9
31gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cance... 40 6.9
32gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 6.9
33emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 6.9
34gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.9
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
36dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
37dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
38dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
39gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7 40 6.9
40gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 6.9
41gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.34... 40 6.9
42gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 6.9
43gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosom... 40 6.9
44gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome ... 40 6.9 
>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  809 bits (408), Expect = 0.0
 Identities = 470/488 (96%), Gaps = 2/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 26  tagatagtgatat-acatgataaatcaacaaaaaatacgataaatatatcaagccacaag 84
           ||||||||||||| |||||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 69  tagatagtgatattacatgataaaacaacaaaaa-tacaagaaatatatcaagccacaag 127

                                                                       
Query: 85  atagcatcaatcaagaaaaatgcgtggtaggaagaaatttagccaagaaacacccatgac 144
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 128 atagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaatgac 187

                                                                       
Query: 145 taaaactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagca 204
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagcagca 247

                                                                       
Query: 205 ctatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaac 264
           | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 ccatcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgggaac 307

                                                                       
Query: 265 ttgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaata 324
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 308 ttcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgccaata 367

                                                                       
Query: 325 ccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatc 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatc 427

                                                                       
Query: 385 atactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaatt 444
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 atactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaact 487

                                                                       
Query: 445 atagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttgga 504
           ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 488 atagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctttgga 547

                   
Query: 505 cttgcagg 512
           ||||||||
Sbjct: 548 cttgcagg 555
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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  281 bits (142), Expect = 1e-72
 Identities = 286/334 (85%)
 Strand = Plus / Minus

                                                                       
Query: 150 ctagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcactatc 209
           |||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |||
Sbjct: 660 ctagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgccatc 601

                                                                       
Query: 210 agaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttgtt 269
           |||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 600 agaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttctt 541

                                                                       
Query: 270 gttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaataccatc 329
           |||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||||
Sbjct: 540 gttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtaccatc 481

                                                                       
Query: 330 agttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcatact 389
           ||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |||
Sbjct: 480 agttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaact 421

                                                                       
Query: 390 gcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattatagc 449
           ||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || ||| |
Sbjct: 420 gcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgataac 361

                                             
Query: 450 gtctgggtgattcttccagaagtcgcaggatcca 483
            ||||| || ||||||||| | ||||||||||||
Sbjct: 360 atctggatggttcttccagtaatcgcaggatcca 327
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                           
Query: 148     aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 207
               |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 7323154 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 7323213

                                                                           
Query: 208     tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 267
               |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 7323214 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 7323273

                                                                           
Query: 268     ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 327
               |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 7323274 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 7323333

                                                                           
Query: 328     tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 387
               ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 7323334 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 7323393

                                                                           
Query: 388     ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 447
               ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 7323394 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 7323453

                                    
Query: 448     gcgtctgggtgattcttccag 468
                | ||||| || |||||||||
Sbjct: 7323454 acatctggatggttcttccag 7323474
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                         
Query: 148   aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 207
             |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 98962 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 99021

                                                                         
Query: 208   tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 267
             |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 99022 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 99081

                                                                         
Query: 268   ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 327
             |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 99082 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 99141

                                                                         
Query: 328   tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 387
             ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 99142 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 99201

                                                                         
Query: 388   ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 447
             ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 99202 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 99261

                                  
Query: 448   gcgtctgggtgattcttccag 468
              | ||||| || |||||||||
Sbjct: 99262 acatctggatggttcttccag 99282
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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  270 bits (136), Expect = 4e-69
 Identities = 286/336 (85%)
 Strand = Plus / Minus

                                                                       
Query: 148 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 207
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 726 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 667

                                                                       
Query: 208 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 267
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 666 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 607

                                                                       
Query: 268 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 327
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 606 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 547

                                                                       
Query: 328 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 387
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 546 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 487

                                                                       
Query: 388 ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 447
           ||||| |||| | | | |||| |||| |||| ||||||||||||||||||||  || |||
Sbjct: 486 ctgcaagcagtatcgagtgtcatgccaatgtcgccaagggacccaatagctgagatgata 427

                                               
Query: 448 gcgtctgggtgattcttccagaagtcgcaggatcca 483
            | ||||| || ||||||||| | ||||||||||||
Sbjct: 426 acatctggatggttcttccagtaatcgcaggatcca 391
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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  228 bits (115), Expect = 1e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 148 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 207
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 239 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 180

                                                                       
Query: 208 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 267
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 179 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 120

                                                                       
Query: 268 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 327
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 119 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 60

                                                              
Query: 328 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgcca 378
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 59  tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgcca 9
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>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 234  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 287
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 234      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 287
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 234   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 287
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633
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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 234  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 287
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884
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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 482   caatgaatccatgcttctttgga 504
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 482   caatgaatccatgcttctttgga 504
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 482   caatgaatccatgcttctttgga 504
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691
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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 482   caatgaatccatgcttctttgga 504
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385
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>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence
          Length = 160310

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   gggattcatttgccttcttgaa 179
             ||||||||||||||||||||||
Sbjct: 91263 gggattcatttgccttcttgaa 91242
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>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 252 tgtaaatgggaacttgttgtt 272
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380
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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 329   cagttctagtgtttgagagtgcatc 353
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 329   cagttctagtgtttgagagtgcatc 353
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   tgtaaatgggaacttgttgtt 272
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663
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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    tcatgcatatttcctagcttc 372
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440
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>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143611

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tatacatgataaatcaacaaa 56
             |||||||||||||||||||||
Sbjct: 19797 tatacatgataaatcaacaaa 19777
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 329    cagttctagtgtttgagagtgcatc 353
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 329    cagttctagtgtttgagagtgcatc 353
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    tcaagccacaagatagcatc 92
             ||||||||||||||||||||
Sbjct: 42370 tcaagccacaagatagcatc 42351
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>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence
          Length = 241789

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    gccaagaaacacccatgact 145
              ||||||||||||||||||||
Sbjct: 212259 gccaagaaacacccatgact 212278
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>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    taggaagaaatttagccaag 131
              ||||||||||||||||||||
Sbjct: 108434 taggaagaaatttagccaag 108453
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>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence
          Length = 184518

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     taaatcaacaaaaaatacgataaa 68
              ||||||||||||||||| ||||||
Sbjct: 125995 taaatcaacaaaaaataagataaa 125972
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>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ggttgtaaatgggaacttgt 268
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921
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>ref|XM_645152.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (233.t00005)
           partial mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  catgataaatcaacaaaaaa 59
           ||||||||||||||||||||
Sbjct: 156 catgataaatcaacaaaaaa 175
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>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gaaatttagccaagaaacac 137
              ||||||||||||||||||||
Sbjct: 123891 gaaatttagccaagaaacac 123872
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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    aagaaatttagccaagaaac 135
              ||||||||||||||||||||
Sbjct: 139883 aagaaatttagccaagaaac 139902
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>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   aagaaatttagccaagaaac 135
             ||||||||||||||||||||
Sbjct: 79920 aagaaatttagccaagaaac 79939
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>gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205702

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     tatacatgataaatcaacaaaaaa 59
              ||||||||||||||||| ||||||
Sbjct: 135229 tatacatgataaatcaaaaaaaaa 135252
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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  atgcagctgccccctcgcgt 309
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738
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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tcatactgcatgcagcacca 402
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     gtcgcggccacgacgatgca 233
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       aaaaaatacgataaatatat 73
                ||||||||||||||||||||
Sbjct: 23056795 aaaaaatacgataaatatat 23056814
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     aaaaaatacgataaatatat 73
              ||||||||||||||||||||
Sbjct: 123339 aaaaaatacgataaatatat 123358
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   aaaaaatacgataaatatat 73
            ||||||||||||||||||||
Sbjct: 7443 aaaaaatacgataaatatat 7462
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>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   aaaaaatacgataaatatat 73
            ||||||||||||||||||||
Sbjct: 1409 aaaaaatacgataaatatat 1428
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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aagaaatttagccaagaaac 135
             ||||||||||||||||||||
Sbjct: 66743 aagaaatttagccaagaaac 66724
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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 479 atccaatgaatccatgcttctttg 502
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701
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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   taggaagaaatttagccaag 131
             ||||||||||||||||||||
Sbjct: 66335 taggaagaaatttagccaag 66354
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 481     ccaatgaatccatgcttctt 500
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466
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>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gaagaccccagcttgggcag 196
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062
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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gccaagaaacacccatgact 145
             ||||||||||||||||||||
Sbjct: 26173 gccaagaaacacccatgact 26192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,941,776
Number of Sequences: 3902068
Number of extensions: 4941776
Number of successful extensions: 90294
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90093
Number of HSP's gapped (non-prelim): 200
length of query: 512
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 489
effective length of database: 17,143,297,704
effective search space: 8383072577256
effective search space used: 8383072577256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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