ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26h23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 181 2e-45
2CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein ki... 78 2e-14
3CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein ki... 65 1e-10
4CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 46 9e-05
5NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-... 30 5.2
6OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b... 30 5.2
7Y485_PSEAE (Q9I633) Hypothetical protein PA0485 30 6.7
8YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2 30 8.8
9DCR1C_HUMAN (Q96SD1) Artemis protein (EC 3.1.-.-) (DNA cross-lin... 30 8.8

>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score =  181 bits (459), Expect = 2e-45
 Identities = 89/99 (89%), Positives = 92/99 (92%)
 Frame = -3

Query: 676 QCPPKEIISKIAEAARPLGFDIQKKNYKMRMENPKAGRKGNLNVATEVFQVAPSLHVVEL 497
           QCPPKEII+KI EAA+PLGFDIQKKNYKMRMEN KAGRKGNLNVATEVFQVAPSLHVVEL
Sbjct: 351 QCPPKEIITKIEEAAKPLGFDIQKKNYKMRMENLKAGRKGNLNVATEVFQVAPSLHVVEL 410

Query: 496 KKAKGDTLEFQMFYRSLSTQLKDVVWKCGGEVEDNSTAA 380
           KKAKGDTLEFQ FYR+LSTQLKDVVWKC GEVE N  AA
Sbjct: 411 KKAKGDTLEFQKFYRTLSTQLKDVVWKCDGEVEGNGAAA 449



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>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC|
           2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY
           SENSITIVE 2 protein)
          Length = 446

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 33/84 (39%), Positives = 57/84 (67%)
 Frame = -3

Query: 667 PKEIISKIAEAARPLGFDIQKKNYKMRMENPKAGRKGNLNVATEVFQVAPSLHVVELKKA 488
           P EII+ I   A  +GF    +N+K R+E   + + G L V  E+++VAPSL +V+++KA
Sbjct: 347 PSEIIANIEAVANSMGFKSHTRNFKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKA 406

Query: 487 KGDTLEFQMFYRSLSTQLKDVVWK 416
            G+TLE+  FY+ L ++L++++W+
Sbjct: 407 AGETLEYHKFYKKLCSKLENIIWR 430



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>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related
           kinase 3.16)
          Length = 444

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
 Frame = -3

Query: 664 KEIISKIAEAARPLGFDIQKKNYKMRMENPKAGRKGN--LNVATEVFQVAPSLHVVELKK 491
           K+++ KI  A   +GF +QKK+ K+R++  +  +KG   L+V  EVF++ PSL+VVEL+K
Sbjct: 355 KDLLEKIETAVTEMGFSVQKKHAKLRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRK 414

Query: 490 AKGDTLEFQMFYRSLSTQLKDV 425
           + GD+  ++  Y  L   LKDV
Sbjct: 415 SYGDSCLYRQLYERL---LKDV 433



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>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/66 (37%), Positives = 40/66 (60%)
 Frame = -3

Query: 661 EIISKIAEAARPLGFDIQKKNYKMRMENPKAGRKGNLNVATEVFQVAPSLHVVELKKAKG 482
           EI  K+ E  + L   ++KK ++ R+   K   +  + V  EVF++APS H+V LKK+ G
Sbjct: 341 EITEKLVEIGKDLKMKVRKKEHEWRV---KMSAEATV-VEAEVFEIAPSYHMVVLKKSGG 396

Query: 481 DTLEFQ 464
           DT E++
Sbjct: 397 DTAEYK 402



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>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (Zinc finger
           C3HC-type protein 1)
          Length = 502

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = +3

Query: 231 FDHHHQQTNEQKNLVCTIHSA----PSMPHPTYQGTMYMENQRRSVGE----SQNVLHAA 386
           FD + Q+  E K  +CT H      P  P P   G + +E     V E     Q++ H  
Sbjct: 134 FDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLEEPAILVSEFLDRFQSLCHLD 193

Query: 387 VLLSSTSPPHFQTTSLS 437
           + L S  P   +T  L+
Sbjct: 194 LQLPSLRPEDLKTMCLT 210



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>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind) (L(1)omb)|
            (Protein bifid)
          Length = 972

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 189  LPQQAARPLFHRSLFDHHHQQTNEQKNLVCTIHSAPSMPHPTYQGTMYMENQRRSVGESQ 368
            L ++AA+   H      HHQQ   Q +     H  P+ PHP +Q  ++  +   + G  Q
Sbjct: 916  LAEEAAQHHHHTQA---HHQQQQHQSHHQQQHHQQPAQPHPHHQTHLHSHHGATTGGTDQ 972



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>Y485_PSEAE (Q9I633) Hypothetical protein PA0485|
          Length = 298

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 251 LLMMMIE*APMKQRARSLLWKSLSMASLVCLSYSWSRGERPYCSKIV 111
           L+ +M+    +K+R R L W ++++ASL      W  G  P+ S ++
Sbjct: 111 LINVMLGMLLLKERLRPLQWLAVALASLGVAQQVWQLGSLPWVSLVL 157



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>YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2|
          Length = 1182

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 182  IGSSTAGCAPAVSSEPIRSSSSTNERTKELGLHNPFRTL---HAPSH 313
            IG+S AGC  + S +  RS  + + R  E+G   P R L   H PSH
Sbjct: 1082 IGTS-AGCVLSTSVQSARSQPTPDLRVCEIGHSGPCRILLPVHTPSH 1127



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>DCR1C_HUMAN (Q96SD1) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C|
           protein) (SNM1-like protein) (A-SCID protein) (hSNM1C)
          Length = 692

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 RSSSSTNERTKELGLHNPFRTLHAPSHISRNYVHGKPAPI 352
           RSS ST  + K LG     RT+H  S    +Y+   P PI
Sbjct: 360 RSSQSTEPKYKPLGKLKRARTVHRDSEEEDDYLFDDPLPI 399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,436,375
Number of Sequences: 219361
Number of extensions: 1932922
Number of successful extensions: 5604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5603
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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