| Clone Name | rbags26h23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY256847.1| Oryza sativa (japonica cultivar-group) CIPK-like protein (CK1) mRNA, complete cds Length = 1594 Score = 335 bits (169), Expect = 1e-88 Identities = 268/301 (89%) Strand = Plus / Minus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 1472 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 1413 Query: 436 gctgggtcgagagagatctgtagaacatttgaaattccagagtatcccccttcgcctttt 495 |||||||||| || | |||||||||| |||| || |||||||| |||||||| ||||| | Sbjct: 1412 gctgggtcgacagggttctgtagaacttttggaactccagagtgtccccctttgccttct 1353 Query: 496 tcagctcaaccacatgtagggatggagctacttgaaacacctcagttgcaacattgagat 555 | |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| Sbjct: 1352 tgagctcaaccacatgtaaggatggagctacttggaaaacctcagttgcaacattgagat 1293 Query: 556 tgccttttctacctgctttcgggttctccatccgcatcttgtagtttttcttctgaatgt 615 |||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||| | Sbjct: 1292 tgccttttctacctgctttcaggttctccatgcgcatcttgtaatttttcttttgaatat 1233 Query: 616 caaatccaagtggccttgcagcttcagcaatcttgctgatgatttcttttggagggcatt 675 |||||||||||||| |||||||||| |||||||| |||| |||||||||||||| |||| Sbjct: 1232 caaatccaagtggctttgcagcttcttcaatcttggtgataatttcttttggaggacatt 1173 Query: 676 g 676 | Sbjct: 1172 g 1172
>dbj|AK111929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H02, full insert sequence Length = 1707 Score = 335 bits (169), Expect = 1e-88 Identities = 268/301 (89%) Strand = Plus / Minus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 1351 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 1292 Query: 436 gctgggtcgagagagatctgtagaacatttgaaattccagagtatcccccttcgcctttt 495 |||||||||| || | |||||||||| |||| || |||||||| |||||||| ||||| | Sbjct: 1291 gctgggtcgacagggttctgtagaacttttggaactccagagtgtccccctttgccttct 1232 Query: 496 tcagctcaaccacatgtagggatggagctacttgaaacacctcagttgcaacattgagat 555 | |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| Sbjct: 1231 tgagctcaaccacatgtaaggatggagctacttggaaaacctcagttgcaacattgagat 1172 Query: 556 tgccttttctacctgctttcgggttctccatccgcatcttgtagtttttcttctgaatgt 615 |||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||| | Sbjct: 1171 tgccttttctacctgctttcaggttctccatgcgcatcttgtaatttttcttttgaatat 1112 Query: 616 caaatccaagtggccttgcagcttcagcaatcttgctgatgatttcttttggagggcatt 675 |||||||||||||| |||||||||| |||||||| |||| |||||||||||||| |||| Sbjct: 1111 caaatccaagtggctttgcagcttcttcaatcttggtgataatttcttttggaggacatt 1052 Query: 676 g 676 | Sbjct: 1051 g 1051 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 gctcttccacagcaggctgcgcgcccgctgtttcatcggagc 227 |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 1553 gctcatccacagcaggcatcgcgcccgttgtttcatcggagc 1512
>dbj|AK111920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E09, full insert sequence Length = 1156 Score = 335 bits (169), Expect = 1e-88 Identities = 268/301 (89%) Strand = Plus / Minus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 1052 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 993 Query: 436 gctgggtcgagagagatctgtagaacatttgaaattccagagtatcccccttcgcctttt 495 |||||||||| || | |||||||||| |||| || |||||||| |||||||| ||||| | Sbjct: 992 gctgggtcgacagggttctgtagaacttttggaactccagagtgtccccctttgccttct 933 Query: 496 tcagctcaaccacatgtagggatggagctacttgaaacacctcagttgcaacattgagat 555 | |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| Sbjct: 932 tgagctcaaccacatgtaaggatggagctacttggaaaacctcagttgcaacattgagat 873 Query: 556 tgccttttctacctgctttcgggttctccatccgcatcttgtagtttttcttctgaatgt 615 |||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||| | Sbjct: 872 tgccttttctacctgctttcaggttctccatgcgcatcttgtaatttttcttttgaatat 813 Query: 616 caaatccaagtggccttgcagcttcagcaatcttgctgatgatttcttttggagggcatt 675 |||||||||||||| |||||||||| |||||||| |||| |||||||||||||| |||| Sbjct: 812 caaatccaagtggctttgcagcttcttcaatcttggtgataatttcttttggaggacatt 753 Query: 676 g 676 | Sbjct: 752 g 752
>dbj|AK111752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050M21, full insert sequence Length = 2399 Score = 335 bits (169), Expect = 1e-88 Identities = 268/301 (89%) Strand = Plus / Minus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 2043 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 1984 Query: 436 gctgggtcgagagagatctgtagaacatttgaaattccagagtatcccccttcgcctttt 495 |||||||||| || | |||||||||| |||| || |||||||| |||||||| ||||| | Sbjct: 1983 gctgggtcgacagggttctgtagaacttttggaactccagagtgtccccctttgccttct 1924 Query: 496 tcagctcaaccacatgtagggatggagctacttgaaacacctcagttgcaacattgagat 555 | |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| Sbjct: 1923 tgagctcaaccacatgtaaggatggagctacttggaaaacctcagttgcaacattgagat 1864 Query: 556 tgccttttctacctgctttcgggttctccatccgcatcttgtagtttttcttctgaatgt 615 |||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||| | Sbjct: 1863 tgccttttctacctgctttcaggttctccatgcgcatcttgtaatttttcttttgaatat 1804 Query: 616 caaatccaagtggccttgcagcttcagcaatcttgctgatgatttcttttggagggcatt 675 |||||||||||||| |||||||||| |||||||| |||| |||||||||||||| |||| Sbjct: 1803 caaatccaagtggctttgcagcttcttcaatcttggtgataatttcttttggaggacatt 1744 Query: 676 g 676 | Sbjct: 1743 g 1743 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 gctcttccacagcaggctgcgcgcccgctgtttcatcggagc 227 |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 2245 gctcatccacagcaggcatcgcgcccgttgtttcatcggagc 2204
>gb|AY106410.1| Zea mays PCO079320 mRNA sequence Length = 1274 Score = 236 bits (119), Expect = 8e-59 Identities = 209/239 (87%) Strand = Plus / Minus Query: 402 acctcgccgccgcacttccaaactacgtccttgagctgggtcgagagagatctgtagaac 461 ||||||||| |||||||||| || || ||||| ||||||||||| || |||||||||| Sbjct: 1068 acctcgccgtcgcacttccacacaacatccttcagctgggtcgacaggcttctgtagaac 1009 Query: 462 atttgaaattccagagtatcccccttcgcctttttcagctcaaccacatgtagggatgga 521 |||| || |||||||| |||||||||||||| || ||||| || ||||| |||||||| Sbjct: 1008 ttttggaactccagagtgtcccccttcgccttcttgagctcgactacatgcagggatggg 949 Query: 522 gctacttgaaacacctcagttgcaacattgagattgccttttctacctgctttcgggttc 581 |||| ||| || ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 948 gctatttggaaaacctcagttgcaacattcagattgccctttctacctgctttcgggttc 889 Query: 582 tccatccgcatcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttc 640 ||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||||||| Sbjct: 888 tccatccgcatcttgtattttttcttctgaacatcaaagccaagcggctttgcagcttc 830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 534 acctcagttgcaacattgagattgccttttctacctgctttcgggttctccatccgcatc 593 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 11500082 acctcagttgcaacattgagattgccttttctacctgctttcaggttctccatgcgcatc 11500141 Query: 594 t 594 | Sbjct: 11500142 t 11500142 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| |||||||| ||||| ||||||||||||||| |||||||||| |||||||| | Sbjct: 11500277 cttgtaatttttcttttgaatatcaaatccaagtggctttgcagcttcttcaatcttggt 11500336 Query: 653 gatgatttcttttggagggcattg 676 ||| |||||||||||||| ||||| Sbjct: 11500337 gataatttcttttggaggacattg 11500360 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 471 tccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggagctacttg 529 |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||||||| Sbjct: 11499940 tccagagtgtccccctttgccttcttgagctcaaccacatgtaaggatggagctacttg 11499998 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 11499754 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 11499813 Query: 436 gctgggtcgagagagatctgtagaac 461 |||||||||| || | |||||||||| Sbjct: 11499814 gctgggtcgacagggttctgtagaac 11499839 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 186 gctcttccacagcaggctgcgcgcccgctgtttcatcggagc 227 |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 11499552 gctcatccacagcaggcatcgcgcccgttgtttcatcggagc 11499593
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 534 acctcagttgcaacattgagattgccttttctacctgctttcgggttctccatccgcatc 593 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 50654 acctcagttgcaacattgagattgccttttctacctgctttcaggttctccatgcgcatc 50713 Query: 594 t 594 | Sbjct: 50714 t 50714 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| |||||||| ||||| ||||||||||||||| |||||||||| |||||||| | Sbjct: 50849 cttgtaatttttcttttgaatatcaaatccaagtggctttgcagcttcttcaatcttggt 50908 Query: 653 gatgatttcttttggagggcattg 676 ||| |||||||||||||| ||||| Sbjct: 50909 gataatttcttttggaggacattg 50932 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 471 tccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggagctacttg 529 |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||||||| Sbjct: 50512 tccagagtgtccccctttgccttcttgagctcaaccacatgtaaggatggagctacttg 50570 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 50326 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 50385 Query: 436 gctgggtcgagagagatctgtagaac 461 |||||||||| || | |||||||||| Sbjct: 50386 gctgggtcgacagggttctgtagaac 50411 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 186 gctcttccacagcaggctgcgcgcccgctgtttcatcggagc 227 |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 50124 gctcatccacagcaggcatcgcgcccgttgtttcatcggagc 50165
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 534 acctcagttgcaacattgagattgccttttctacctgctttcgggttctccatccgcatc 593 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 11496845 acctcagttgcaacattgagattgccttttctacctgctttcaggttctccatgcgcatc 11496904 Query: 594 t 594 | Sbjct: 11496905 t 11496905 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| |||||||| ||||| ||||||||||||||| |||||||||| |||||||| | Sbjct: 11497040 cttgtaatttttcttttgaatatcaaatccaagtggctttgcagcttcttcaatcttggt 11497099 Query: 653 gatgatttcttttggagggcattg 676 ||| |||||||||||||| ||||| Sbjct: 11497100 gataatttcttttggaggacattg 11497123 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 471 tccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggagctacttg 529 |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||||||| Sbjct: 11496703 tccagagtgtccccctttgccttcttgagctcaaccacatgtaaggatggagctacttg 11496761 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 376 ttcatgccgcggtgctgttatcttctacctcgccgccgcacttccaaactacgtccttga 435 |||| ||||||| || ||| |||| ||||||||| |||||||||| || |||||||||| Sbjct: 11496517 ttcacgccgcggcgccgttgccttcgacctcgccgtcgcacttccagaccacgtccttga 11496576 Query: 436 gctgggtcgagagagatctgtagaac 461 |||||||||| || | |||||||||| Sbjct: 11496577 gctgggtcgacagggttctgtagaac 11496602 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 186 gctcttccacagcaggctgcgcgcccgctgtttcatcggagc 227 |||| |||||||||||| |||||||| |||||||||||||| Sbjct: 11496315 gctcatccacagcaggcatcgcgcccgttgtttcatcggagc 11496356
>ref|XM_479600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1338 Score = 103 bits (52), Expect = 7e-19 Identities = 139/168 (82%) Strand = Plus / Minus Query: 455 gtagaacatttgaaattccagagtatcccccttcgcctttttcagctcaaccacatgtag 514 ||||||| ||||||| ||||| ||||| ||||| |||||||| |||||||||||||||| Sbjct: 1269 gtagaacttttgaaactccagggtatctcccttggcctttttgagctcaaccacatgtaa 1210 Query: 515 ggatggagctacttgaaacacctcagttgcaacattgagattgccttttctacctgcttt 574 |||||| || ||||| || ||||||||||||| || |||| |||||||| ||| | || Sbjct: 1209 ggatggtgccacttggaaaacctcagttgcaatgtttagatgtccttttcttccttcctt 1150 Query: 575 cgggttctccatccgcatcttgtagtttttcttctgaatgtcaaatcc 622 |||||||| | |||| |||||||| |||||||||| | |||||| Sbjct: 1149 tatattctccattctcatcctgtagtttctcttctgaatattaaatcc 1102
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 463 tttgaaattccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggag 522 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||||| |||||| | Sbjct: 29140422 tttgaaactccagggtatctcccttggcctttttgagctcaaccacatgtaaggatggtg 29140363 Query: 523 ctacttg 529 | ||||| Sbjct: 29140362 ccacttg 29140356
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 463 tttgaaattccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggag 522 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||||| |||||| | Sbjct: 75540 tttgaaactccagggtatctcccttggcctttttgagctcaaccacatgtaaggatggtg 75481 Query: 523 ctacttg 529 | ||||| Sbjct: 75480 ccacttg 75474
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 463 tttgaaattccagagtatcccccttcgcctttttcagctcaaccacatgtagggatggag 522 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||||| |||||| | Sbjct: 88379 tttgaaactccagggtatctcccttggcctttttgagctcaaccacatgtaaggatggtg 88320 Query: 523 ctacttg 529 | ||||| Sbjct: 88319 ccacttg 88313
>dbj|AK111675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155F11, full insert sequence Length = 2204 Score = 63.9 bits (32), Expect = 6e-07 Identities = 107/132 (81%) Strand = Plus / Minus Query: 536 ctcagttgcaacattgagattgccttttctacctgctttcgggttctccatccgcatctt 595 |||||| |||||||||||||| |||||||| |||||||| || |||| || | ||| Sbjct: 1748 ctcagtagcaacattgagatttccttttctccctgcttttaccttttccaaccttaactt 1689 Query: 596 gtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgctgat 655 ||| ||||||||||||| |||||||| || || |||| ||||| ||||||||| || Sbjct: 1688 gtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttgcggac 1629 Query: 656 gatttcttttgg 667 ||||||||||| Sbjct: 1628 aatttcttttgg 1617
>gb|BT013905.1| Lycopersicon esculentum clone 132902R, mRNA sequence Length = 1650 Score = 58.0 bits (29), Expect = 4e-05 Identities = 110/137 (80%) Strand = Plus / Minus Query: 519 ggagctacttgaaacacctcagttgcaacattgagattgccttttctacctgctttcggg 578 ||||| ||||||||||||||||| | ||| || || || ||||||||||| |||||| | Sbjct: 1296 ggagcaacttgaaacacctcagtggaaacgttaaggttcccttttctaccggctttcaga 1237 Query: 579 ttctccatccgcatcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagct 638 || | | || |||||||||||| || || |||| |||||| || || ||| | |||||| Sbjct: 1236 ttttgaagcctcatcttgtagttctttttgtgaacgtcaaaaccgagaggcttagcagct 1177 Query: 639 tcagcaatcttgctgat 655 || ||||||| ||||| Sbjct: 1176 tcttcaatcttactgat 1160
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24, complete sequence Length = 162385 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 124249 acctcagtagcaacattgagatttccttttctccctgcttt 124209 Score = 50.1 bits (25), Expect = 0.010 Identities = 64/77 (83%) Strand = Plus / Minus Query: 591 atcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttg 650 |||||||| ||||||||||||| |||||||| || || |||| ||||| |||||||| Sbjct: 124063 atcttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttg 124004 Query: 651 ctgatgatttcttttgg 667 | || ||||||||||| Sbjct: 124003 cggacaatttcttttgg 123987
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 1558588 acctcagtagcaacattgagatttccttttctccctgcttt 1558548 Score = 46.1 bits (23), Expect = 0.15 Identities = 62/75 (82%) Strand = Plus / Minus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| ||||||||||||| |||||||| || || |||| ||||| ||||||||| Sbjct: 1558400 cttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttgcg 1558341 Query: 653 gatgatttcttttgg 667 || ||||||||||| Sbjct: 1558340 gacaatttcttttgg 1558326
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 1609713 acctcagtagcaacattgagatttccttttctccctgcttt 1609673 Score = 50.1 bits (25), Expect = 0.010 Identities = 64/77 (83%) Strand = Plus / Minus Query: 591 atcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttg 650 |||||||| ||||||||||||| |||||||| || || |||| ||||| |||||||| Sbjct: 1609527 atcttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttg 1609468 Query: 651 ctgatgatttcttttgg 667 | || ||||||||||| Sbjct: 1609467 cggacaatttcttttgg 1609451
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 1607434 acctcagtagcaacattgagatttccttttctccctgcttt 1607394 Score = 50.1 bits (25), Expect = 0.010 Identities = 64/77 (83%) Strand = Plus / Minus Query: 591 atcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttg 650 |||||||| ||||||||||||| |||||||| || || |||| ||||| |||||||| Sbjct: 1607248 atcttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttg 1607189 Query: 651 ctgatgatttcttttgg 667 | || ||||||||||| Sbjct: 1607188 cggacaatttcttttgg 1607172
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 1558588 acctcagtagcaacattgagatttccttttctccctgcttt 1558548 Score = 46.1 bits (23), Expect = 0.15 Identities = 62/75 (82%) Strand = Plus / Minus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| ||||||||||||| |||||||| || || |||| ||||| ||||||||| Sbjct: 1558400 cttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttgcg 1558341 Query: 653 gatgatttcttttgg 667 || ||||||||||| Sbjct: 1558340 gacaatttcttttgg 1558326
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 534 acctcagttgcaacattgagattgccttttctacctgcttt 574 |||||||| |||||||||||||| |||||||| |||||||| Sbjct: 67144 acctcagtagcaacattgagatttccttttctccctgcttt 67184 Score = 46.1 bits (23), Expect = 0.15 Identities = 62/75 (82%) Strand = Plus / Plus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| ||||||||||||| |||||||| || || |||| ||||| ||||||||| Sbjct: 67332 cttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttgcg 67391 Query: 653 gatgatttcttttgg 667 || ||||||||||| Sbjct: 67392 gacaatttcttttgg 67406
>dbj|AK112043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B09, full insert sequence Length = 1515 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 536 ctcagttgcaacattgagattgccttttctacctgcttt 574 |||||| |||||||||||||| |||||||| |||||||| Sbjct: 1069 ctcagtagcaacattgagatttccttttctccctgcttt 1031 Score = 50.1 bits (25), Expect = 0.010 Identities = 64/77 (83%) Strand = Plus / Minus Query: 591 atcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttg 650 |||||||| ||||||||||||| |||||||| || || |||| ||||| |||||||| Sbjct: 966 atcttgtaatttttcttctgaacatcaaatcctagaggttttgcggcttcctcaatcttg 907 Query: 651 ctgatgatttcttttgg 667 | || ||||||||||| Sbjct: 906 cggacaatttcttttgg 890
>dbj|AB113571.1| Lotus japonicus mRNA for Ser/Thr protein kinase, complete cds, clone:LNZ003 Length = 1892 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 590 catcttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatctt 649 ||||||||| ||||||||||| | ||||| ||||| || |||||||||| ||||||| Sbjct: 1411 catcttgtaatttttcttctgcacatcaaagccaagaggttttgcagcttcttcaatctt 1352 Query: 650 gctgat 655 |||||| Sbjct: 1351 gctgat 1346
>emb|Y12464.1|SBPPSTK S.bicolor DNA for gene encoding putative protein serine/threonine kinase, clone cSNFL1 Length = 2129 Score = 48.1 bits (24), Expect = 0.038 Identities = 60/72 (83%) Strand = Plus / Minus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgct 652 |||||| ||||||||||||| |||||||| || || |||||||||| ||||||||| Sbjct: 1530 cttgtaatttttcttctgaacatcaaatcctagaggttttgcagcttcctcaatcttgcg 1471 Query: 653 gatgatttcttt 664 || |||||||| Sbjct: 1470 gacaatttcttt 1459
>gb|AC092360.2| Homo sapiens chromosome 5 clone RP11-346B2, complete sequence Length = 130737 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 363 tctcaaaatgtgcttcatgccgc 385 ||||||||||||||||||||||| Sbjct: 28325 tctcaaaatgtgcttcatgccgc 28303
>ref|XM_389500.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09324.1) partial mRNA Length = 1641 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 tcatcatcatcaacaaacgaa 256 ||||||||||||||||||||| Sbjct: 4 tcatcatcatcaacaaacgaa 24
>emb|AL049647.7|HSJ1027G4 Human DNA sequence from clone RP5-1027G4 on chromosome 20 Contains part of the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3 and a novel gene, complete sequence Length = 164845 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 tttgaaattccagagtatccc 483 ||||||||||||||||||||| Sbjct: 141510 tttgaaattccagagtatccc 141530
>gb|AC161521.16| Mus musculus chromosome 19, clone RP24-124P14, complete sequence Length = 169497 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 72620 aacaaacgaacgaacaaaag 72601
>gb|AC164649.4| Mus musculus BAC clone RP23-437D10 from chromosome 5, complete sequence Length = 215766 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 caacaaacgaacgaacaaaa 265 |||||||||||||||||||| Sbjct: 205062 caacaaacgaacgaacaaaa 205043
>gb|AC124127.12| Mus musculus chromosome 19, clone RP23-150N4, complete sequence Length = 194548 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gctcttccacagcaggctgc 205 |||||||||||||||||||| Sbjct: 90422 gctcttccacagcaggctgc 90441
>gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's Hospital Oakland Research Institute) complete sequence Length = 176067 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ttcgatcatcatcatcaaca 250 |||||||||||||||||||| Sbjct: 133977 ttcgatcatcatcatcaaca 133996
>gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, complete sequence Length = 191100 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 caacaaacgaacgaacaaaa 265 |||||||||||||||||||| Sbjct: 29688 caacaaacgaacgaacaaaa 29669
>gb|AC140042.19| Mus musculus chromosome 5, clone RP23-437D10, complete sequence Length = 215786 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 caacaaacgaacgaacaaaa 265 |||||||||||||||||||| Sbjct: 10705 caacaaacgaacgaacaaaa 10724
>gb|AC113961.14| Mus musculus chromosome 19, clone RP23-18G1, complete sequence Length = 256791 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gctcttccacagcaggctgc 205 |||||||||||||||||||| Sbjct: 235137 gctcttccacagcaggctgc 235156
>ref|XM_984002.1| PREDICTED: Mus musculus zinc finger protein 292 (Zfp292), mRNA Length = 9984 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 9611 aacaaacgaacgaacaaaag 9592
>ref|XM_909747.2| PREDICTED: Mus musculus zinc finger protein 292, transcript variant 4 (Zfp292), mRNA Length = 10211 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 9838 aacaaacgaacgaacaaaag 9819
>ref|XM_620009.3| PREDICTED: Mus musculus zinc finger protein 292, transcript variant 2 (Zfp292), mRNA Length = 9988 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 9615 aacaaacgaacgaacaaaag 9596
>ref|XM_849966.1| PREDICTED: Canis familiaris similar to AHNAK nucleoprotein isoform 1 (LOC476059), mRNA Length = 15114 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 ctttcgcctctggaccatgaatat 156 |||||||||||||||||| ||||| Sbjct: 4147 ctttcgcctctggaccatcaatat 4124
>ref|XM_804561.1| Trypanosoma cruzi strain CL Brener myosin heavy chain (Tc00.1047053511527.70) partial mRNA Length = 3177 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gagtctcaaaatgtgcttcatgcc 383 |||| ||||||||||||||||||| Sbjct: 955 gagtttcaaaatgtgcttcatgcc 978
>gb|AC163993.3| Mus musculus chromosome 19, clone RP24-78O14, complete sequence Length = 177411 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gctcttccacagcaggctgc 205 |||||||||||||||||||| Sbjct: 113785 gctcttccacagcaggctgc 113766
>emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on chromosome 10 Contains the gene for a novel OTU-like cysteine protease domain containing protein (LOC220213) and a CpG island, complete sequence Length = 182917 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 136707 aacaaacgaacgaacaaaag 136688
>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23, complete sequence Length = 125999 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 atcatcatcatcaacaaacg 254 |||||||||||||||||||| Sbjct: 123776 atcatcatcatcaacaaacg 123757
>emb|Y12465.1|SBPPSTK2 S.bicolor mRNA for putative protein serine/threonine kinase, clone cSNFL2 Length = 2054 Score = 40.1 bits (20), Expect = 9.3 Identities = 104/132 (78%) Strand = Plus / Minus Query: 536 ctcagttgcaacattgagattgccttttctacctgctttcgggttctccatccgcatctt 595 |||||| ||||||||||| || || || || |||||||| ||||| | || || ||| Sbjct: 1524 ctcagtagcaacattgaggtttcccttcctccctgcttttactttctcaagcctcaactt 1465 Query: 596 gtagtttttcttctgaatgtcaaatccaagtggccttgcagcttcagcaatcttgctgat 655 ||| ||||||||||||| ||||||| || || |||||||||| ||||||||| | Sbjct: 1464 gtaatttttcttctgaacaccaaatcctagaggttttgcagcttcctcaatcttgcgcac 1405 Query: 656 gatttcttttgg 667 ||||||||||| Sbjct: 1404 aatttcttttgg 1393
>emb|BX001008.3| Mouse DNA sequence from clone RP24-143D17 on chromosome 11 Contains part of the 3'UTR of the U2af1-rs1 gene for U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 (related sequence 1), the 5' end of the Murr1 gene for U2af1-rs1 region 1, the Cct4 gene for chaperonin subunit 4 (delta), the 5' end of gene FLJ13305 and three CpG islands, complete sequence Length = 46341 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 agatctgtagaacatttgaa 468 |||||||||||||||||||| Sbjct: 1067 agatctgtagaacatttgaa 1048
>emb|AL772364.20| Mouse DNA sequence from clone RP23-242C19 on chromosome 11 Contains a ribosomal protein S16 (Rps16) pseudogene, the B3gnt1 gene for beta-1,3-N-acetylglucosaminyltransferase 1, the Murr1 gene for U2af1-rs1 region 1, the U2af1-rs1 gene for U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 (related sequence 1) and two CpG islands, complete sequence Length = 210863 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 agatctgtagaacatttgaa 468 |||||||||||||||||||| Sbjct: 209930 agatctgtagaacatttgaa 209911
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaacgaacgaacaaaagaac 269 |||||||||||||||||||| Sbjct: 120556 aaacgaacgaacaaaagaac 120575
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaacgaacgaacaaaagaac 269 |||||||||||||||||||| Sbjct: 34498 aaacgaacgaacaaaagaac 34517
>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2, complete sequence Length = 159100 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 90084 aacaaacgaacgaacaaaag 90065
>gb|AC120042.3| Homo sapiens chromosome 8, clone RP11-659E9, complete sequence Length = 170940 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 cattgagattgccttttcta 566 |||||||||||||||||||| Sbjct: 155781 cattgagattgccttttcta 155762
>gb|AC074194.6| Homo sapiens BAC clone RP11-739P1 from 4, complete sequence Length = 177273 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 ttttcttctgaatgtcaaat 620 |||||||||||||||||||| Sbjct: 122513 ttttcttctgaatgtcaaat 122532
>gb|AC160062.6| Mus musculus 6 BAC RP23-427I18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169540 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gagagagatctgtagaacat 463 |||||||||||||||||||| Sbjct: 103229 gagagagatctgtagaacat 103248
>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete sequence Length = 215330 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaagaacttggt 274 ||||||| ||| |||||||||||||||| Sbjct: 84580 aacaaacaaacaaacaaaagaacttggt 84553
>gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome 17, complete sequence Length = 215626 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 140737 aacaaacgaacgaacaaaag 140718
>dbj|AK088798.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430026C09 product:inferred: zinc finger protein 292 / Zn-15 transcription factor {Mus musculus}, full insert sequence Length = 1527 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 1172 aacaaacgaacgaacaaaag 1153
>dbj|AK046236.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230358L01 product:zinc finger protein 292, full insert sequence Length = 3180 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 3036 aacaaacgaacgaacaaaag 3017
>gb|AF309654.1|AF309654 Mus musculus U2AF small subunit-related protein (U2af1-rs1) gene, complete cds Length = 10587 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 agatctgtagaacatttgaa 468 |||||||||||||||||||| Sbjct: 6408 agatctgtagaacatttgaa 6389
>dbj|AK034951.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430065L06 product:zinc finger protein 292, full insert sequence Length = 3949 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 3581 aacaaacgaacgaacaaaag 3562
>dbj|AK079133.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430062L07 product:inferred: zinc finger protein 292 / Zn-15 transcription factor {Mus musculus}, full insert sequence Length = 1417 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 1044 aacaaacgaacgaacaaaag 1025
>dbj|AK030552.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330430M06 product:U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), 35 kDa, related sequence 1, full insert sequence Length = 3284 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 agatctgtagaacatttgaa 468 |||||||||||||||||||| Sbjct: 2666 agatctgtagaacatttgaa 2647
>dbj|AK041203.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530090D17 product:zinc finger protein 292, full insert sequence Length = 2104 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 1797 aacaaacgaacgaacaaaag 1778
>gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete sequence Length = 177807 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 catcttgtagtttttcttct 609 |||||||||||||||||||| Sbjct: 99788 catcttgtagtttttcttct 99807
>gb|AC008507.11| Homo sapiens chromosome 19 clone CTC-448F2, complete sequence Length = 179005 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 atcttgtagtttttcttctg 610 |||||||||||||||||||| Sbjct: 88817 atcttgtagtttttcttctg 88836
>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence Length = 158203 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 140221 aacaaacgaacgaacaaaag 140202
>gb|AC090953.2| Homo sapiens chromosome 3 clone RP11-608O8 map 3p, complete sequence Length = 189961 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 tgtagtttttcttctgaatgtcaa 618 ||||||||||||||| |||||||| Sbjct: 134006 tgtagtttttcttctaaatgtcaa 133983
>gb|AC090948.2| Homo sapiens chromosome 3 clone RP11-415F23 map 3p, complete sequence Length = 179729 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 tgtagtttttcttctgaatgtcaa 618 ||||||||||||||| |||||||| Sbjct: 38106 tgtagtttttcttctaaatgtcaa 38083
>emb|BX465850.12| Mouse DNA sequence from clone RP24-349L5 on chromosome 4, complete sequence Length = 59975 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 12417 aacaaacgaacgaacaaaag 12436
>emb|BX004870.13| Zebrafish DNA sequence from clone CH211-168H9 in linkage group 5, complete sequence Length = 153127 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 aacaaacgaacgaacaaaagaact 270 |||||||||||||||||| ||||| Sbjct: 78656 aacaaacgaacgaacaaacgaact 78679
>dbj|AB089806.1| Mus musculus Murr1 and U2af1-rs1 genes, partial and complete cds Length = 23466 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 agatctgtagaacatttgaa 468 |||||||||||||||||||| Sbjct: 17076 agatctgtagaacatttgaa 17095
>gb|AC151283.2| Mus musculus BAC clone RP23-463A14 from 17, complete sequence Length = 177340 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aacaaacgaacgaacaaaag 266 |||||||||||||||||||| Sbjct: 128511 aacaaacgaacgaacaaaag 128530
>emb|BX640589.8| Zebrafish DNA sequence from clone CH211-222H13 in linkage group 19, complete sequence Length = 99460 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 601 ttttcttctgaatgtcaaatccaa 624 |||||||||||||| ||||||||| Sbjct: 49245 ttttcttctgaatgccaaatccaa 49268
>gb|AY104530.1| Zea mays PCO115834 mRNA sequence Length = 2069 Score = 40.1 bits (20), Expect = 9.3 Identities = 41/48 (85%) Strand = Plus / Minus Query: 593 cttgtagtttttcttctgaatgtcaaatccaagtggccttgcagcttc 640 |||||| ||||||||||||| |||||||| || || |||||||||| Sbjct: 1522 cttgtaatttttcttctgaacatcaaatcctagaggttttgcagcttc 1475
>emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in linkage group 25, complete sequence Length = 160429 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 caacaaacgaacgaacaaaagaac 269 ||||||| |||||||||||||||| Sbjct: 68498 caacaaatgaacgaacaaaagaac 68521
>gb|AC101349.8| Mus musculus chromosome 6, clone RP23-111E12, complete sequence Length = 196303 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gagagagatctgtagaacat 463 |||||||||||||||||||| Sbjct: 193448 gagagagatctgtagaacat 193467
>emb|AL136087.12| Human DNA sequence from clone RP1-137F1 on chromosome 6p21.1-21.2, complete sequence Length = 140136 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccctcctaccaatacaatct 118 |||||||||||||||||||| Sbjct: 55234 ccctcctaccaatacaatct 55215 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccctcctaccaatacaatct 118 |||||||||||||||||||| Sbjct: 55181 ccctcctaccaatacaatct 55162
>emb|Z98304.1|HS54B20 Human DNA sequence from clone RP1-54B20 on chromosome Xp11.1-11.3 Contains the 5' end of the SSX6 gene for synovial sarcoma X breakpoint 6, two novel genes similar to a C2H2 type zinc finger protein, a novel gene, a novel gene similar to lysozyme C (1,4-beta-N-acetylmuramidase), the ZNF81 gene for zinc finger protein 81 (HFZ20) and three CpG islands, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 tttttcttctgaatgtcaaa 619 |||||||||||||||||||| Sbjct: 205339 tttttcttctgaatgtcaaa 205358
>gb|AC132103.3| Mus musculus BAC clone RP24-363K20 from 9, complete sequence Length = 192053 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 caaacgaacgaacaaaagaa 268 |||||||||||||||||||| Sbjct: 189710 caaacgaacgaacaaaagaa 189729
>gb|AC160104.2| Mus musculus BAC clone RP24-330A11 from chromosome 9, complete sequence Length = 223326 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 caaacgaacgaacaaaagaa 268 |||||||||||||||||||| Sbjct: 207438 caaacgaacgaacaaaagaa 207419
>emb|AL844551.3| Mouse DNA sequence from clone RP23-117M21 on chromosome 2, complete sequence Length = 172378 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tagaacatttgaaattccag 475 |||||||||||||||||||| Sbjct: 149043 tagaacatttgaaattccag 149024
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171887 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 gctcaaccacatgtagggat 518 |||||||||||||||||||| Sbjct: 142844 gctcaaccacatgtagggat 142825
>dbj|AP001033.6| Homo sapiens genomic DNA, chromosome 18p clone:RP11-888D10, complete sequences Length = 200891 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 605 cttctgaatgtcaaatccaagtggcctt 632 |||||||||||||||| ||| ||||||| Sbjct: 83415 cttctgaatgtcaaatacaaatggcctt 83388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,103,005 Number of Sequences: 3902068 Number of extensions: 8103005 Number of successful extensions: 213601 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 213052 Number of HSP's gapped (non-prelim): 548 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)