| Clone Name | rbaal1f13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472545.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 48.1 bits (24), Expect = 0.004 Identities = 51/60 (85%) Strand = Plus / Minus Query: 5 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64 ||||||||| ||||| ||||| ||||||||||||||| ||| | || || ||||||||| Sbjct: 873 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 814
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 48.1 bits (24), Expect = 0.004 Identities = 51/60 (85%) Strand = Plus / Plus Query: 5 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64 ||||||||| ||||| ||||| ||||||||||||||| ||| | || || ||||||||| Sbjct: 35644 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 35703
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.004 Identities = 51/60 (85%) Strand = Plus / Plus Query: 5 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64 ||||||||| ||||| ||||| ||||||||||||||| ||| | || || ||||||||| Sbjct: 21385894 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 21385953
>dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G08, full insert sequence Length = 375 Score = 48.1 bits (24), Expect = 0.004 Identities = 51/60 (85%) Strand = Plus / Minus Query: 5 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64 ||||||||| ||||| ||||| ||||||||||||||| ||| | || || ||||||||| Sbjct: 166 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 107
>dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full insert sequence Length = 1180 Score = 48.1 bits (24), Expect = 0.004 Identities = 51/60 (85%) Strand = Plus / Minus Query: 5 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64 ||||||||| ||||| ||||| ||||||||||||||| ||| | || || ||||||||| Sbjct: 971 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 912
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete sequence Length = 176947 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cctccacaggctcctccgaa 50 |||||||||||||||||||| Sbjct: 11528 cctccacaggctcctccgaa 11547
>ref|XM_415234.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ14360 (LOC416940), mRNA Length = 2190 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 agacagcagcatcctcttt 25 ||||||||||||||||||| Sbjct: 132 agacagcagcatcctcttt 150
>ref|XM_960718.1| Neurospora crassa OR74A hypothetical protein (NCU00671.1) partial mRNA Length = 7989 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 catcctctttagtatcctc 34 ||||||||||||||||||| Sbjct: 3255 catcctctttagtatcctc 3273
>gb|DQ338462.1| Nephila antipodiana clone 145 minor ampullate fibroin 1 mRNA, partial cds Length = 1189 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 acagcagcatcctctttagtatc 31 |||||||||||| |||||||||| Sbjct: 816 acagcagcatccactttagtatc 838
>ref|XM_324850.1| Neurospora crassa OR74A hypothetical protein (NCU00671.1) partial mRNA Length = 7989 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 catcctctttagtatcctc 34 ||||||||||||||||||| Sbjct: 3255 catcctctttagtatcctc 3273
>gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, complete sequence Length = 213381 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 cagacagcagcatcctctt 24 ||||||||||||||||||| Sbjct: 129508 cagacagcagcatcctctt 129490
>emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chromosome 1 Contains a novel gene, complete sequence Length = 157779 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 cctcagacagcagcatcct 21 ||||||||||||||||||| Sbjct: 124272 cctcagacagcagcatcct 124290
>emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I16 on chromosome 1p35.1-35.3 Contains the 3' end of the gene PTPRU for protein tyrosine phosphatase receptor type U and a novel gene, complete sequence Length = 120385 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cgcctcagacagcagcatc 19 ||||||||||||||||||| Sbjct: 36498 cgcctcagacagcagcatc 36480
>emb|BX933481.2| Gallus gallus finished cDNA, clone ChEST665d14 Length = 760 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 agacagcagcatcctcttt 25 ||||||||||||||||||| Sbjct: 126 agacagcagcatcctcttt 108
>gb|AC090884.1|AC090884 Homo sapiens chromosome 3 clone RP11-165B2 map 3p, complete sequence Length = 166991 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 atcctccacaggctcctcc 47 ||||||||||||||||||| Sbjct: 115846 atcctccacaggctcctcc 115828
>gb|AC062037.5| Homo sapiens BAC clone RP11-717A5 from 2, complete sequence Length = 87387 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 cagacagcagcatcctctt 24 ||||||||||||||||||| Sbjct: 75096 cagacagcagcatcctctt 75078
>gb|AC090646.2| Homo sapiens chromosome 3 clone RP11-690A6 map 3p, complete sequence Length = 165681 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 atcctccacaggctcctcc 47 ||||||||||||||||||| Sbjct: 83931 atcctccacaggctcctcc 83913
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 tcctccacaggctcctccg 48 ||||||||||||||||||| Sbjct: 1488981 tcctccacaggctcctccg 1488963 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 673,525 Number of Sequences: 3902068 Number of extensions: 673525 Number of successful extensions: 46579 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46520 Number of HSP's gapped (non-prelim): 59 length of query: 94 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 73 effective length of database: 17,151,101,840 effective search space: 1252030434320 effective search space used: 1252030434320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)