ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472545.1| Oryza sativa (japonica cultivar-group), predic... 48 0.004
2emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 48 0.004
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.004
4dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.004
5dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.004
6emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 o... 40 1.0
7ref|XM_415234.1| PREDICTED: Gallus gallus similar to hypothetica... 38 4.1
8ref|XM_960718.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
9gb|DQ338462.1| Nephila antipodiana clone 145 minor ampullate fib... 38 4.1
10ref|XM_324850.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
11gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, co... 38 4.1
12emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chr... 38 4.1
13emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I... 38 4.1
14emb|BX933481.2| Gallus gallus finished cDNA, clone ChEST665d14 38 4.1
15gb|AC090884.1|AC090884 Homo sapiens chromosome 3 clone RP11-165B... 38 4.1
16gb|AC062037.5| Homo sapiens BAC clone RP11-717A5 from 2, complet... 38 4.1
17gb|AC090646.2| Homo sapiens chromosome 3 clone RP11-690A6 map 3p... 38 4.1
18dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 38 4.1

>ref|XM_472545.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 873 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 814



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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 5     tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64
             ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 35644 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 35703



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 5        tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64
                ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 21385894 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 21385953



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>dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G08, full
           insert sequence
          Length = 375

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 166 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 107



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>dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full
           insert sequence
          Length = 1180

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 64
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 971 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 912



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>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
             sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    cctccacaggctcctccgaa 50
             ||||||||||||||||||||
Sbjct: 11528 cctccacaggctcctccgaa 11547



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>ref|XM_415234.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ14360
           (LOC416940), mRNA
          Length = 2190

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   agacagcagcatcctcttt 25
           |||||||||||||||||||
Sbjct: 132 agacagcagcatcctcttt 150



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>ref|XM_960718.1| Neurospora crassa OR74A hypothetical protein (NCU00671.1) partial
            mRNA
          Length = 7989

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   catcctctttagtatcctc 34
            |||||||||||||||||||
Sbjct: 3255 catcctctttagtatcctc 3273



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>gb|DQ338462.1| Nephila antipodiana clone 145 minor ampullate fibroin 1 mRNA,
           partial cds
          Length = 1189

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 9   acagcagcatcctctttagtatc 31
           |||||||||||| ||||||||||
Sbjct: 816 acagcagcatccactttagtatc 838



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>ref|XM_324850.1| Neurospora crassa OR74A hypothetical protein (NCU00671.1) partial
            mRNA
          Length = 7989

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   catcctctttagtatcctc 34
            |||||||||||||||||||
Sbjct: 3255 catcctctttagtatcctc 3273



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>gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, complete sequence
          Length = 213381

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      cagacagcagcatcctctt 24
              |||||||||||||||||||
Sbjct: 129508 cagacagcagcatcctctt 129490



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>emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chromosome 1 Contains a
              novel gene, complete sequence
          Length = 157779

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      cctcagacagcagcatcct 21
              |||||||||||||||||||
Sbjct: 124272 cctcagacagcagcatcct 124290



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>emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I16 on chromosome 1p35.1-35.3
             Contains the 3' end of the gene PTPRU for protein tyrosine
             phosphatase receptor type U and a novel gene, complete
             sequence
          Length = 120385

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     cgcctcagacagcagcatc 19
             |||||||||||||||||||
Sbjct: 36498 cgcctcagacagcagcatc 36480



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>emb|BX933481.2| Gallus gallus finished cDNA, clone ChEST665d14
          Length = 760

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   agacagcagcatcctcttt 25
           |||||||||||||||||||
Sbjct: 126 agacagcagcatcctcttt 108



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>gb|AC090884.1|AC090884 Homo sapiens chromosome 3 clone RP11-165B2 map 3p, complete sequence
          Length = 166991

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     atcctccacaggctcctcc 47
              |||||||||||||||||||
Sbjct: 115846 atcctccacaggctcctcc 115828



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>gb|AC062037.5| Homo sapiens BAC clone RP11-717A5 from 2, complete sequence
          Length = 87387

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     cagacagcagcatcctctt 24
             |||||||||||||||||||
Sbjct: 75096 cagacagcagcatcctctt 75078



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>gb|AC090646.2| Homo sapiens chromosome 3 clone RP11-690A6 map 3p, complete sequence
          Length = 165681

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    atcctccacaggctcctcc 47
             |||||||||||||||||||
Sbjct: 83931 atcctccacaggctcctcc 83913



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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 30      tcctccacaggctcctccg 48
               |||||||||||||||||||
Sbjct: 1488981 tcctccacaggctcctccg 1488963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 673,525
Number of Sequences: 3902068
Number of extensions: 673525
Number of successful extensions: 46579
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46520
Number of HSP's gapped (non-prelim): 59
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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