ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26h17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463564.1| Oryza sativa (japonica cultivar-group), predic... 335 1e-88
2dbj|AK070098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 335 1e-88
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 125 2e-25
5dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
7gb|AY104201.1| Zea mays PCO093235 mRNA sequence 58 4e-05
8gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, com... 44 0.54
9gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, comp... 44 0.54
10ref|NM_124136.3| Arabidopsis thaliana acyl carrier/ cofactor bin... 42 2.1
11ref|XM_644883.1| Entamoeba histolytica HM-1:IMSS CXXC-rich prote... 42 2.1
12gb|AC134177.1| Drosophila pseudoobscura FOSMID DPSF1-548A1 (Chi... 42 2.1
13gb|AY096717.1| Arabidopsis thaliana putative acyl carrier protei... 42 2.1
14gb|AY063951.1| Arabidopsis thaliana putative acyl carrier protei... 42 2.1
15gb|AY931438.1| HIV-1 isolate TZMDE620-2-6 from Tanzania envelope... 42 2.1
16gb|AY931437.1| HIV-1 isolate TZMDE620-2-5 from Tanzania envelope... 42 2.1
17gb|AY931436.1| HIV-1 isolate TZMDE620-2-4 from Tanzania envelope... 42 2.1
18dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.1
19gb|AC129545.5| Mus musculus chromosome 1, clone RP23-264E23, com... 40 8.5
20ref|XM_639084.1| Dictyostelium discoideum hypothetical protein (... 40 8.5
21ref|XM_630755.1| Dictyostelium discoideum hypothetical protein (... 40 8.5
22ref|XM_872624.1| PREDICTED: Bos taurus similar to steroid-sensit... 40 8.5
23ref|XM_593217.2| PREDICTED: Bos taurus similar to steroid-sensit... 40 8.5
24gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome... 40 8.5
25gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome... 40 8.5
26emb|Z71266.1|CER06C7 Caenorhabditis elegans Cosmid R06C7, comple... 40 8.5
27gb|AF003130.3| Caenorhabditis elegans cosmid F55A12, complete se... 40 8.5
28gb|AC164249.5| Medicago truncatula clone mth2-20n15, complete se... 40 8.5
29emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on ... 40 8.5
30emb|AL390203.29| Human DNA sequence from clone RP11-462G8 on chr... 40 8.5
31emb|AL117352.12|HSJ876B10 Human DNA sequence from clone RP5-876B... 40 8.5
32gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 8.5
33emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in... 40 8.5
34gb|AC093252.3| Homo sapiens chromosome 5 clone RP11-15B5, comple... 40 8.5
35dbj|AB017367.1| Gentiana lutea mRNA for Lycopen cyclase 2, compl... 40 8.5
36dbj|AB017366.1| Gentiana lutea mRNA for phytoene cyclase, comple... 40 8.5
37gb|AC116349.2| Homo sapiens chromosome 5 clone RP11-30F18, compl... 40 8.5
38gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosom... 40 8.5
39ref|NM_059178.1| Caenorhabditis elegans F55A12.1 (F55A12.1) mRNA... 40 8.5
40ref|NM_059644.3| Caenorhabditis elegans R06C7.1 (R06C7.1) mRNA, ... 40 8.5
41gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 40 8.5
42gb|AF246631.1|AF246630S2 Homo sapiens SM-20 (C1orf12) gene, exon... 40 8.5
43gb|AC132605.3| Mus musculus BAC clone RP24-90M10 from chromosome... 40 8.5
44gb|AY906864.1| Lycium barbarum lycopene beta-cyclase (LycB) mRNA... 40 8.5
45emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1... 40 8.5
46emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 i... 40 8.5
47gb|AC114406.11| Mus musculus chromosome 14, clone RP23-8P18, com... 40 8.5
48emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in l... 40 8.5
49emb|AL929048.9| Zebrafish DNA sequence from clone CH211-161N1 in... 40 8.5
50emb|AL672188.6| Mouse DNA sequence from clone RP23-53B2 on chrom... 40 8.5 
>ref|XM_463564.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1878

 Score =  335 bits (169), Expect = 1e-88
 Identities = 292/333 (87%)
 Strand = Plus / Minus

                                                                        
Query: 291  ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
            ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 1783 ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 1724

                                                                        
Query: 351  caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
            |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 1723 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 1664

                                                                        
Query: 411  tctcatcagggatctcatacatggcctccagtagaatggtctctaagatgactcttagac 470
            |||| || |||||||||||||||||||||| ||||| | | || |||||| |||| ||||
Sbjct: 1663 tctcgtctgggatctcatacatggcctccaatagaaggctttccaagatggctctcagac 1604

                                                                        
Query: 471  cacgtgcaccagtgtttttgactatggccttctttgctactattctcagtgcaccatcag 530
            ||||||||||||| ||| || |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 1603 cacgtgcaccagtatttctggctatagccttcttggctactattctaagtgcaccatcag 1544

                                                                        
Query: 531  tgaagtgtagcttaacattgttcaggctaaacattttcctgtattgtctcgaaagtgaat 590
            | ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1543 taaagtgtaacttaactttgttcaggctaaacattttcctgtattgtctggaaagagaat 1484

                                             
Query: 591  tttttggttctgtaagaacctgaacaagctgat 623
            | |||||||||||||||||||||||||||||||
Sbjct: 1483 tctttggttctgtaagaacctgaacaagctgat 1451
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>dbj|AK070098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040F17, full
            insert sequence
          Length = 1946

 Score =  335 bits (169), Expect = 1e-88
 Identities = 292/333 (87%)
 Strand = Plus / Minus

                                                                        
Query: 291  ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
            ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 1464 ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 1405

                                                                        
Query: 351  caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
            |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 1404 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 1345

                                                                        
Query: 411  tctcatcagggatctcatacatggcctccagtagaatggtctctaagatgactcttagac 470
            |||| || |||||||||||||||||||||| ||||| | | || |||||| |||| ||||
Sbjct: 1344 tctcgtctgggatctcatacatggcctccaatagaaggctttccaagatggctctcagac 1285

                                                                        
Query: 471  cacgtgcaccagtgtttttgactatggccttctttgctactattctcagtgcaccatcag 530
            ||||||||||||| ||| || |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 1284 cacgtgcaccagtatttctggctatagccttcttggctactattctaagtgcaccatcag 1225

                                                                        
Query: 531  tgaagtgtagcttaacattgttcaggctaaacattttcctgtattgtctcgaaagtgaat 590
            | ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1224 taaagtgtaacttaactttgttcaggctaaacattttcctgtattgtctggaaagagaat 1165

                                             
Query: 591  tttttggttctgtaagaacctgaacaagctgat 623
            | |||||||||||||||||||||||||||||||
Sbjct: 1164 tctttggttctgtaagaacctgaacaagctgat 1132
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                            
Query: 424      ctcatacatggcctccagtagaatggtctctaagatgactcttagaccacgtgcaccagt 483
                ||||||||||||||||| ||||| | | || |||||| |||| |||||||||||||||||
Sbjct: 38514776 ctcatacatggcctccaatagaaggctttccaagatggctctcagaccacgtgcaccagt 38514835

                                                                            
Query: 484      gtttttgactatggccttctttgctactattctcagtgcaccatcagtgaagtgtagctt 543
                 ||| || |||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct: 38514836 atttctggctatagccttcttggctactattctaagtgcaccatcagtaaagtgtaactt 38514895

                   
Query: 544      aac 546
                |||
Sbjct: 38514896 aac 38514898



 Score =  109 bits (55), Expect = 1e-20
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                            
Query: 548      ttgttcaggctaaacattttcctgtattgtctcgaaagtgaattttttggttctgtaaga 607
                |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 38514986 ttgttcaggctaaacattttcctgtattgtctggaaagagaattctttggttctgtaaga 38515045

                       
Query: 608      acctgaa 614
                |||||||
Sbjct: 38515046 acctgaa 38515052



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 113/135 (83%)
 Strand = Plus / Plus

                                                                            
Query: 291      ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
                ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 38514573 ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 38514632

                                                                            
Query: 351      caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
                |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 38514633 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 38514692

                               
Query: 411      tctcatcagggatct 425
                |||| || |||||||
Sbjct: 38514693 tctcgtctgggatct 38514707
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                          
Query: 424    ctcatacatggcctccagtagaatggtctctaagatgactcttagaccacgtgcaccagt 483
              ||||||||||||||||| ||||| | | || |||||| |||| |||||||||||||||||
Sbjct: 107869 ctcatacatggcctccaatagaaggctttccaagatggctctcagaccacgtgcaccagt 107928

                                                                          
Query: 484    gtttttgactatggccttctttgctactattctcagtgcaccatcagtgaagtgtagctt 543
               ||| || |||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct: 107929 atttctggctatagccttcttggctactattctaagtgcaccatcagtaaagtgtaactt 107988

                 
Query: 544    aac 546
              |||
Sbjct: 107989 aac 107991



 Score =  109 bits (55), Expect = 1e-20
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                          
Query: 548    ttgttcaggctaaacattttcctgtattgtctcgaaagtgaattttttggttctgtaaga 607
              |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 108079 ttgttcaggctaaacattttcctgtattgtctggaaagagaattctttggttctgtaaga 108138

                     
Query: 608    acctgaa 614
              |||||||
Sbjct: 108139 acctgaa 108145



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 113/135 (83%)
 Strand = Plus / Plus

                                                                          
Query: 291    ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
              ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 107666 ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 107725

                                                                          
Query: 351    caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
              |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 107726 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 107785

                             
Query: 411    tctcatcagggatct 425
              |||| || |||||||
Sbjct: 107786 tctcgtctgggatct 107800
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>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434C04
          Length = 150064

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                         
Query: 424   ctcatacatggcctccagtagaatggtctctaagatgactcttagaccacgtgcaccagt 483
             ||||||||||||||||| ||||| | | || |||||| |||| |||||||||||||||||
Sbjct: 35457 ctcatacatggcctccaatagaaggctttccaagatggctctcagaccacgtgcaccagt 35516

                                                                         
Query: 484   gtttttgactatggccttctttgctactattctcagtgcaccatcagtgaagtgtagctt 543
              ||| || |||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct: 35517 atttctggctatagccttcttggctactattctaagtgcaccatcagtaaagtgtaactt 35576

                
Query: 544   aac 546
             |||
Sbjct: 35577 aac 35579



 Score =  109 bits (55), Expect = 1e-20
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                         
Query: 548   ttgttcaggctaaacattttcctgtattgtctcgaaagtgaattttttggttctgtaaga 607
             |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 35667 ttgttcaggctaaacattttcctgtattgtctggaaagagaattctttggttctgtaaga 35726

                    
Query: 608   acctgaa 614
             |||||||
Sbjct: 35727 acctgaa 35733



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 113/135 (83%)
 Strand = Plus / Plus

                                                                         
Query: 291   ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
             ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 35254 ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 35313

                                                                         
Query: 351   caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
             |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 35314 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 35373

                            
Query: 411   tctcatcagggatct 425
             |||| || |||||||
Sbjct: 35374 tctcgtctgggatct 35388
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0408G07
          Length = 126631

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                          
Query: 424    ctcatacatggcctccagtagaatggtctctaagatgactcttagaccacgtgcaccagt 483
              ||||||||||||||||| ||||| | | || |||||| |||| |||||||||||||||||
Sbjct: 100191 ctcatacatggcctccaatagaaggctttccaagatggctctcagaccacgtgcaccagt 100250

                                                                          
Query: 484    gtttttgactatggccttctttgctactattctcagtgcaccatcagtgaagtgtagctt 543
               ||| || |||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct: 100251 atttctggctatagccttcttggctactattctaagtgcaccatcagtaaagtgtaactt 100310

                 
Query: 544    aac 546
              |||
Sbjct: 100311 aac 100313



 Score =  109 bits (55), Expect = 1e-20
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                          
Query: 548    ttgttcaggctaaacattttcctgtattgtctcgaaagtgaattttttggttctgtaaga 607
              |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 100401 ttgttcaggctaaacattttcctgtattgtctggaaagagaattctttggttctgtaaga 100460

                     
Query: 608    acctgaa 614
              |||||||
Sbjct: 100461 acctgaa 100467



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 113/135 (83%)
 Strand = Plus / Plus

                                                                          
Query: 291    ttatgtactgtgccagtgcgccgtccccccgaagaattttagccccgcacccgggcctgt 350
              ||||||||||  ||| ||| ||||| |||||||||||||| || || || || ||||| |
Sbjct: 99988  ttatgtactgctccaatgcaccgtcaccccgaagaattttggctccacatcctggcctat 100047

                                                                          
Query: 351    caacggaaccaatggcctcctcatccaccacaacagcatctactcgctcgtttccggctt 410
              |||  ||||| || ||||||||||||||||||||||| |||||||| ||| |||| | ||
Sbjct: 100048 caattgaacctattgcctcctcatccaccacaacagcgtctactcgttcgcttcctgttt 100107

                             
Query: 411    tctcatcagggatct 425
              |||| || |||||||
Sbjct: 100108 tctcgtctgggatct 100122
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>gb|AY104201.1| Zea mays PCO093235 mRNA sequence
          Length = 973

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 511 tattctcagtgcaccatcagtgaagtgtagcttaacattgttcaggctaaaca 563
           |||||| ||||||||||| || ||||| ||||||||||| |||| ||||||||
Sbjct: 740 tattctaagtgcaccatctgtaaagtgaagcttaacattattcatgctaaaca 688
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>gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, complete sequence
          Length = 206320

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 271   gtttggtaagttatttcttatt 292
             ||||||||||||||||||||||
Sbjct: 83259 gtttggtaagttatttcttatt 83280
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>gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, complete sequence
          Length = 175699

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 271   gtttggtaagttatttcttatt 292
             ||||||||||||||||||||||
Sbjct: 69892 gtttggtaagttatttcttatt 69871
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>ref|NM_124136.3| Arabidopsis thaliana acyl carrier/ cofactor binding AT5G47630 mRNA,
           complete cds
          Length = 949

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 gctttctcatcagggatctca 427
           |||||||||||||||||||||
Sbjct: 355 gctttctcatcagggatctca 335
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>ref|XM_644883.1| Entamoeba histolytica HM-1:IMSS CXXC-rich protein (255.t00006)
            partial mRNA
          Length = 4767

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   atcaacaattacaacaaatga 68
            |||||||||||||||||||||
Sbjct: 4359 atcaacaattacaacaaatga 4379
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>gb|AC134177.1| Drosophila pseudoobscura  FOSMID DPSF1-548A1 (Children's Hospital
             Oakland Research Institute Drosophila pseudoobscura FOSMID
             Library) complete sequence
          Length = 46224

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   agccccgcacccgggcctgtc 351
             |||||||||||||||||||||
Sbjct: 29440 agccccgcacccgggcctgtc 29460
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>gb|AY096717.1| Arabidopsis thaliana putative acyl carrier protein (At5g47630)
           mRNA, complete cds
          Length = 427

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 gctttctcatcagggatctca 427
           |||||||||||||||||||||
Sbjct: 320 gctttctcatcagggatctca 300
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>gb|AY063951.1| Arabidopsis thaliana putative acyl carrier protein (At5g47630)
           mRNA, complete cds
          Length = 656

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 gctttctcatcagggatctca 427
           |||||||||||||||||||||
Sbjct: 355 gctttctcatcagggatctca 335
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>gb|AY931438.1| HIV-1 isolate TZMDE620-2-6 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 624

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 40  ctgtttacatcaacaattacaacaaatga 68
           |||||||||||||| |||||| |||||||
Sbjct: 343 ctgtttacatcaactattacatcaaatga 371
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>gb|AY931437.1| HIV-1 isolate TZMDE620-2-5 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 624

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 40  ctgtttacatcaacaattacaacaaatga 68
           |||||||||||||| |||||| |||||||
Sbjct: 343 ctgtttacatcaactattacatcaaatga 371
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>gb|AY931436.1| HIV-1 isolate TZMDE620-2-4 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 624

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 40  ctgtttacatcaacaattacaacaaatga 68
           |||||||||||||| |||||| |||||||
Sbjct: 343 ctgtttacatcaactattacatcaaatga 371
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>dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7
          Length = 80117

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   gctttctcatcagggatctca 427
             |||||||||||||||||||||
Sbjct: 66752 gctttctcatcagggatctca 66732
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>gb|AC129545.5| Mus musculus chromosome 1, clone RP23-264E23, complete sequence
          Length = 180431

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   aagttatttcttattatgta 297
             ||||||||||||||||||||
Sbjct: 22563 aagttatttcttattatgta 22544
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>ref|XM_639084.1| Dictyostelium discoideum hypothetical protein (DDB0217556),
          partial mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 45 tacatcaacaattacaacaa 64
          ||||||||||||||||||||
Sbjct: 17 tacatcaacaattacaacaa 36
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>ref|XM_630755.1| Dictyostelium discoideum hypothetical protein (DDB0188794), partial
           mRNA
          Length = 1356

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  acatcaacaattacaacaaa 65
           ||||||||||||||||||||
Sbjct: 249 acatcaacaattacaacaaa 268
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>ref|XM_872624.1| PREDICTED: Bos taurus similar to steroid-sensitive protein 1,
            transcript variant 2 (LOC515235), mRNA
          Length = 3759

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  gatctcatacatggcctcca 440
            ||||||||||||||||||||
Sbjct: 1574 gatctcatacatggcctcca 1555
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>ref|XM_593217.2| PREDICTED: Bos taurus similar to steroid-sensitive protein 1,
            transcript variant 1 (LOC515235), mRNA
          Length = 4390

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  gatctcatacatggcctcca 440
            ||||||||||||||||||||
Sbjct: 1574 gatctcatacatggcctcca 1555
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>gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome 12, complete sequence
          Length = 175549

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   atggtctctaagatgactct 465
             ||||||||||||||||||||
Sbjct: 86421 atggtctctaagatgactct 86440
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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    agttatttcttattatgtac 298
              ||||||||||||||||||||
Sbjct: 158001 agttatttcttattatgtac 157982
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>emb|Z71266.1|CER06C7 Caenorhabditis elegans Cosmid R06C7, complete sequence
          Length = 30911

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 367  ctcctcatccaccacaacagcatc 390
            |||||||||||||||||| |||||
Sbjct: 3067 ctcctcatccaccacaaccgcatc 3090
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>gb|AF003130.3| Caenorhabditis elegans cosmid F55A12, complete sequence
          Length = 45736

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   ctcctcatccaccacaacagcatc 390
             |||||||||||||||||| |||||
Sbjct: 29615 ctcctcatccaccacaaccgcatc 29638
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>gb|AC164249.5| Medicago truncatula clone mth2-20n15, complete sequence
          Length = 125319

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   catcaacaattacaacaaat 66
            ||||||||||||||||||||
Sbjct: 7738 catcaacaattacaacaaat 7757
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>emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on chromosome X, complete
             sequence
          Length = 76552

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   aggctaaacattttcctgta 573
             ||||||||||||||||||||
Sbjct: 35876 aggctaaacattttcctgta 35857
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>emb|AL390203.29| Human DNA sequence from clone RP11-462G8 on chromosome 10 Contains the
             3' end of gene FLJ38950 and two novel genes, complete
             sequence
          Length = 150622

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaatagatcacaggaaaatt 132
             ||||||||||||||||||||
Sbjct: 60477 aaatagatcacaggaaaatt 60458
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>emb|AL117352.12|HSJ876B10 Human DNA sequence from clone RP5-876B10 on chromosome 1q42.12-43
              Contains the 3' end of the GNPAT gene for
              glyceronephosphate O-acyltransferase, the EXOC8 gene for
              exocyst complex component 8, the gene for novel protein
              (DKFZp547N043, FLJ14707, FLJ14411), the 3' end of the EGLN1
              gene for egl nine homolog 1 (C. elegans) and a CpG island,
              complete sequence
          Length = 138056

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 560    aacattttcctgtattgtct 579
              ||||||||||||||||||||
Sbjct: 119072 aacattttcctgtattgtct 119053
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   agttatttcttattatgtac 298
             ||||||||||||||||||||
Sbjct: 53195 agttatttcttattatgtac 53176
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>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9,
              complete sequence
          Length = 173526

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ccaaagcctcgttggtttcc 265
              ||||||||||||||||||||
Sbjct: 171231 ccaaagcctcgttggtttcc 171250
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>gb|AC093252.3| Homo sapiens chromosome 5 clone RP11-15B5, complete sequence
          Length = 143060

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    gagtttggtaagttatttct 288
              ||||||||||||||||||||
Sbjct: 100670 gagtttggtaagttatttct 100651
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>dbj|AB017367.1| Gentiana lutea mRNA for Lycopen cyclase 2, complete cds
          Length = 2272

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 13   aggatggttgctcgatnaaggca 35
            |||||||||||||||| ||||||
Sbjct: 1309 aggatggttgctcgattaaggca 1331
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>dbj|AB017366.1| Gentiana lutea mRNA for phytoene cyclase, complete cds
          Length = 2147

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 13   aggatggttgctcgatnaaggca 35
            |||||||||||||||| ||||||
Sbjct: 1144 aggatggttgctcgattaaggca 1166
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>gb|AC116349.2| Homo sapiens chromosome 5 clone RP11-30F18, complete sequence
          Length = 164891

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gagtttggtaagttatttct 288
             ||||||||||||||||||||
Sbjct: 99214 gagtttggtaagttatttct 99233
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>gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosome 12, complete
             sequence
          Length = 185536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   atggtctctaagatgactct 465
             ||||||||||||||||||||
Sbjct: 67049 atggtctctaagatgactct 67068
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>ref|NM_059178.1| Caenorhabditis elegans F55A12.1 (F55A12.1) mRNA, complete cds
          Length = 2679

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 ctcctcatccaccacaacagcatc 390
           |||||||||||||||||| |||||
Sbjct: 5   ctcctcatccaccacaaccgcatc 28
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>ref|NM_059644.3| Caenorhabditis elegans R06C7.1 (R06C7.1) mRNA, complete cds
          Length = 3047

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 ctcctcatccaccacaacagcatc 390
           |||||||||||||||||| |||||
Sbjct: 29  ctcctcatccaccacaaccgcatc 52
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>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tacatcaacaattacaacaa 64
              ||||||||||||||||||||
Sbjct: 102390 tacatcaacaattacaacaa 102371
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>gb|AF246631.1|AF246630S2 Homo sapiens SM-20 (C1orf12) gene, exons 2-5, and complete cds
          Length = 44516

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   aacattttcctgtattgtct 579
             ||||||||||||||||||||
Sbjct: 18985 aacattttcctgtattgtct 19004
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>gb|AC132605.3| Mus musculus BAC clone RP24-90M10 from chromosome 14, complete sequence
          Length = 170855

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 594    ttggttctgtaagaacctgaacaagctg 621
              |||||||||||||||| | |||||||||
Sbjct: 122725 ttggttctgtaagaacatcaacaagctg 122698
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>gb|AY906864.1| Lycium barbarum lycopene beta-cyclase (LycB) mRNA, complete cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 13  aggatggttgctcgatnaaggca 35
           |||||||||||||||| ||||||
Sbjct: 967 aggatggttgctcgattaaggca 989
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>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 242832

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    cacaggaaaattggttaaat 140
              ||||||||||||||||||||
Sbjct: 130637 cacaggaaaattggttaaat 130618
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>emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 in linkage group 7,
              complete sequence
          Length = 223489

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ttggtaagttatttcttatt 292
              ||||||||||||||||||||
Sbjct: 163573 ttggtaagttatttcttatt 163554
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>gb|AC114406.11| Mus musculus chromosome 14, clone RP23-8P18, complete sequence
          Length = 203905

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 594  ttggttctgtaagaacctgaacaagctg 621
            |||||||||||||||| | |||||||||
Sbjct: 5149 ttggttctgtaagaacatcaacaagctg 5176
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>emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in linkage group 7, complete
             sequence
          Length = 268480

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ttggtaagttatttcttatt 292
             ||||||||||||||||||||
Sbjct: 78875 ttggtaagttatttcttatt 78894
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>emb|AL929048.9| Zebrafish DNA sequence from clone CH211-161N1 in linkage group 20,
             complete sequence
          Length = 149801

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttacatcaacaattacaaca 63
             ||||||||||||||||||||
Sbjct: 80759 ttacatcaacaattacaaca 80778
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>emb|AL672188.6| Mouse DNA sequence from clone RP23-53B2 on chromosome X, complete
             sequence
          Length = 150121

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   gtggacattttacagaatat 176
             ||||||||||||||||||||
Sbjct: 54619 gtggacattttacagaatat 54638


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,029,053
Number of Sequences: 3902068
Number of extensions: 5029053
Number of successful extensions: 95742
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95600
Number of HSP's gapped (non-prelim): 142
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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