Clone Information

BLAST Search Result

Clone Name	rbags26h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RNF12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain-interact...	35	0.11
2	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	34	0.33
3	FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)	33	0.56
4	POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein V...	33	0.56
5	DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)	33	0.73
6	INHA_BOVIN (P07994) Inhibin alpha chain precursor	32	0.96
7	INHA_SHEEP (P38440) Inhibin alpha chain precursor (Fragment)	32	1.3
8	JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylatio...	32	1.3
9	VG67_ICHV1 (Q00107) Hypothetical gene 67 protein	32	1.6
10	DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CD...	31	2.1
11	INHA_RAT (P17490) Inhibin alpha chain precursor	31	2.1
12	EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear a...	31	2.1
13	RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type r...	31	2.8
14	POLG_EC22H (Q66578) Genome polyprotein [Contains: Coat protein V...	31	2.8
15	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	31	2.8
16	HYR1_CANAL (P46591) Hyphally-regulated protein precursor	31	2.8
17	INHA_MOUSE (Q04997) Inhibin alpha chain precursor	31	2.8
18	EAF3_CANGA (Q6FN68) Chromatin modification-related protein EAF3	31	2.8
19	Y8K7_ENCCU (Q8SUH9) Hypothetical protein ECU08_2070	30	3.6
20	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	30	3.6
21	COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemph...	30	3.6
22	ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenyl...	30	3.6
23	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	30	3.6
24	INHA_HORSE (P55101) Inhibin alpha chain precursor	30	3.6
25	CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)	30	3.6
26	COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemph...	30	3.6
27	ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Aden...	30	3.6
28	PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]	30	4.8
29	POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p...	30	4.8
30	ATF5_RAT (Q6P788) Cyclic AMP-dependent transcription factor ATF-...	30	4.8
31	PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]	30	4.8
32	NONA_DROLR (Q9GRX4) Protein no-on-transient A	30	6.2
33	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	30	6.2
34	NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)	30	6.2
35	COL13_CAEEL (P20631) Cuticle collagen 13 precursor	30	6.2
36	COL12_CAEEL (P20630) Cuticle collagen 12 precursor	30	6.2
37	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	30	6.2
38	STC2_MOUSE (O88452) Stanniocalcin-2 precursor (STC-2)	30	6.2
39	SPT5H_DROME (Q9V460) Transcription elongation factor SPT5 (dSpt5...	30	6.2
40	LORI_MOUSE (P18165) Loricrin	30	6.2
41	HME2_HUMAN (P19622) Homeobox protein engrailed-2 (Hu-En-2)	30	6.2
42	FBRL_NEUCR (Q9HE26) Fibrillarin	30	6.2
43	RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6....	30	6.2
44	RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6....	30	6.2
45	NCKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1 (Na(+)...	30	6.2
46	CD99_MOUSE (Q8VCN6) CD99 antigen precursor (Paired immunoglobin-...	30	6.2
47	KR1_BHV1S (Q08097) Serine/threonine-protein kinase (EC 2.7.11.1)	30	6.2
48	IF2_ENTFC (P18311) Translation initiation factor IF-2	30	6.2
49	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	29	8.1
50	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	29	8.1
51	VNUA_PRVKA (P33485) Probable nuclear antigen	29	8.1
52	CSP_PLACC (P08673) Circumsporozoite protein precursor (CS)	29	8.1
53	CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 ...	29	8.1
54	STC2_PONPY (Q5RAT2) Stanniocalcin-2 precursor (STC-2)	29	8.1
55	STC2_MACNE (O97561) Stanniocalcin-2 precursor (STC-2)	29	8.1
56	STC2_HUMAN (O76061) Stanniocalcin-2 precursor (STC-2) (Stannioca...	29	8.1
57	MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc fin...	29	8.1
58	VE2_BPV6 (Q705F3) Regulatory protein E2	29	8.1
59	SCR_DROME (P09077) Homeotic protein Sex combs reduced	29	8.1
60	TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repe...	29	8.1
61	WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)	29	8.1
62	WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)	29	8.1
63	WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 ...	29	8.1
64	Y2F4_ENCCU (Q8SW86) Hypothetical protein ECU02_1540	29	8.1

>RNF12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain-interacting RING finger|
           protein) (RING finger LIM domain-binding protein)
           (R-LIM)
          Length = 600

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 479 TRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSK---GSSEGRSDPPDRT 309
           +R       + G G  GG   +G+      +  S  +  ++SSK   GSSEG S  P R 
Sbjct: 427 SRNVERVESRNGRGSSGGGNSSGSSSSSSPSPSSSGESSESSSKMFEGSSEGGSSGPSRK 486

Query: 308 DSRVTYPM 285
           D R   P+
Sbjct: 487 DGRHRAPV 494

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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
 Frame = -1

Query: 548 EGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRG---HGKDGGKARAGTPRGGGEAGIS 378
           +GR+  RS G   ++KS    +  RG+   +  R    + K   ++R+ +P+  G+  I 
Sbjct: 231 KGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIK 290

Query: 377 QRQDEQASSKGSS---------EGRSDPPDRTDSR 300
            +   ++ S+ +S            S PP R  SR
Sbjct: 291 SKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSR 325

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>FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)|
          Length = 308

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPR--GGGEAGISQRQDEQASSKGSSEGRSDPP 318
           G RG    RG G+DGG    G  R  GGG +G   R   +   +G+  GR  PP
Sbjct: 7   GGRGGGGFRG-GRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPP 59



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPRGGGEAG 384
           G RG +  RG G+   + R G PRGG + G
Sbjct: 37  GDRGRSGPRGRGRGAPRGRGGPPRGGMKGG 66

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>POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein VP0 (P1AB);|
           Coat protein VP3 (P1C); Coat protein VP1 (P1D);
           Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
           protein P2B; Core protein P2C; Core protein P3A;
           Genome-linked protein VPg (P3
          Length = 2179

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = +1

Query: 172 LKNQGMLTAERGS*IPLTTIF*QASSSTSAKVHRNSHSIGYVTLESVLSGGSDRPSELPL 351
           L + G++T   G  + L+     + S+   +  R+S+++GY+  + +L+G S    E+ L
Sbjct: 685 LSSSGIITVPAGEQMTLSV---PSYSNKPLRTVRSSNALGYLLCKPLLTGTSSGRIEIFL 741

Query: 352 LLACSSWRWLMPASPP 399
            L C ++ + +PA  P
Sbjct: 742 SLRCPNFFFPLPAPKP 757

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>DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 802

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 464 GENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSD 324
           G   +  HG  G K +A    GG +AG   R+D Q  SKG+ +G+ D
Sbjct: 708 GGGRRGRHGPPGQKRKAEDGDGGEDAGGKGRKD-QGKSKGTGKGKDD 753

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>INHA_BOVIN (P07994) Inhibin alpha chain precursor|
          Length = 360

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 277 SHSIGYVTLESVLSGGSDRPSELPLLLACSSWRWLMPASPPPRGVPARAFPPSLPWP 447
           +H +  + L   L   S RP   P L+A +       A PP  G  AR   P LPWP
Sbjct: 184 THPVLALLLRCPLCSCSTRPEATPFLVAHTR------AKPPSGGERARRSTPPLPWP 234

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>INHA_SHEEP (P38440) Inhibin alpha chain precursor (Fragment)|
          Length = 265

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 277 SHSIGYVTLESVLSGGSDRPSELPLLLACSSWRWLMPASPPPRGVPARAFPPSLPWP 447
           +H +  + L   L   S RP   P L+A +       A PP  G  AR   P LPWP
Sbjct: 89  THPVLALLLRCPLCSCSARPEATPFLVAHTR------AKPPSGGERARRSTPPLPWP 139

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>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1B)
           (Nuclear protein 5qNCA)
          Length = 1761

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -1

Query: 488 NEETRGTRGENEKRGHGKDGGKARAGTPRGG---GEAGISQRQDEQASS 351
           +++ +G RGE +   +G DGG+A  G  +GG   GE G+ QR  +  S+
Sbjct: 299 SKKLKGDRGEVDS--NGSDGGEASRGPWKGGNASGEPGLDQRAKQPPST 345

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>VG67_ICHV1 (Q00107) Hypothetical gene 67 protein|
          Length = 1556

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 292 YVTLESVLSGGSDRPSELPLLLACSSWRWLMP 387
           Y+ +E VL GG +R  +LPLL    +++W  P
Sbjct: 545 YIPVEPVLDGGGERLLDLPLLFTGFAFQWAEP 576

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>DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CDET6-19)|
          Length = 155

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -1

Query: 479 TRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSE 336
           T G  G      HG  GG    GT   GG  G   R+   +SS  SSE
Sbjct: 45  TTGVLGHGTAGQHGTTGGGLGHGTAGTGGALGGQHRRSGSSSSSSSSE 92

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>INHA_RAT (P17490) Inhibin alpha chain precursor|
          Length = 366

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 277 SHSIGYVTLESVLSGGSDRPSELPLLLACSSWRWLMPASPPPRGVPARAFPPSLPWP 447
           +H I  + L   L   S RP   P L+A +       A  P  G  AR   PS+PWP
Sbjct: 191 THPILVLLLRCPLCSCSGRPETTPFLVAHTR------ARAPSAGERARRSAPSMPWP 241

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>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)|
           (EBNA-1)
          Length = 641

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = -1

Query: 476 RGTRGENEKRGHGKD---GGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDR 312
           RG  G   +RG G++   GG       RG G      R     SS   S  R  PP R
Sbjct: 345 RGRGGSGGRRGRGRERARGGSRERARGRGRGRGEKRPRSPSSQSSSSGSPPRRPPPGR 402



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 467 RGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRTDS 303
           RG +  RG G  GG+ R G+    G      R   +  ++G   GR +   R+ S
Sbjct: 331 RGGSGGRGRGGSGGRGRGGSGGRRGRGRERARGGSRERARGRGRGRGEKRPRSPS 385

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>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5038

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -1

Query: 470  TRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGR 330
            +  EN K G  K+G  A  GTP+ GGEA  ++ ++E+ ++   ++ R
Sbjct: 1342 SEAENGKEGTAKEG--APGGTPQAGGEAQPARAENEKDATTEKNKKR 1386

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>POLG_EC22H (Q66578) Genome polyprotein [Contains: Coat protein VP0 (P1AB);|
           Coat protein VP3 (P1C); Coat protein VP1 (P1D);
           Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
           protein P2B; Core protein P2C; Core protein P3A;
           Genome-linked protein VPg (P3
          Length = 2180

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/84 (26%), Positives = 44/84 (52%)
 Frame = +1

Query: 172 LKNQGMLTAERGS*IPLTTIF*QASSSTSAKVHRNSHSIGYVTLESVLSGGSDRPSELPL 351
           L + G++T   G  + L+  +    S+   +  R+++S+GY+  +  L+G S    E+ L
Sbjct: 685 LSSNGVITVPAGEQMTLSAPY---YSNKPLRTVRDNNSLGYLMCKPFLTGTSTGKIEVYL 741

Query: 352 LLACSSWRWLMPASPPPRGVPARA 423
            L C ++ + +PA   P+   +RA
Sbjct: 742 SLRCPNFFFPLPA---PKVTSSRA 762

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>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 476 RGTRGENEKRGHGKDGGKARA---GTPRGGGEAGISQRQDEQASSKGSSEGRSDP 321
           RG RG +++RG  + GG  R    G+ +     G S +  +  S +   E + DP
Sbjct: 155 RGGRGPSDRRGDARSGGGGRGGARGSDKDKNRGGKSDKDKKAPSGEEGDEKKFDP 209

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>HYR1_CANAL (P46591) Hyphally-regulated protein precursor|
          Length = 937

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = -1

Query: 488 NEETRGTRGENEKRGHGKDGGKAR---------AGTPRGGGEAGISQRQDEQASSKGSSE 336
           NE + G  G NE   HG + G            +G+    G    SQ   E  S+ GS+E
Sbjct: 680 NEGSEGGSGSNEGSNHGSNEGSGSGSGSGSNNGSGSGSQSGSGSGSQSGSESGSNSGSNE 739

Query: 335 G 333
           G
Sbjct: 740 G 740

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>INHA_MOUSE (Q04997) Inhibin alpha chain precursor|
          Length = 366

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 277 SHSIGYVTLESVLSGGSDRPSELPLLLACSSWRWLMPASPPPRGVPARAFPPSLPWP 447
           +H I  + L   L   S RP   P L+A +       A  P  G  AR   PS+PWP
Sbjct: 191 THPILVLLLRCPLCSCSGRPETTPFLVAHTR------ARAPSAGERARRSTPSVPWP 241

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>EAF3_CANGA (Q6FN68) Chromatin modification-related protein EAF3|
          Length = 355

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -1

Query: 485 EETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRTD 306
           ++ +   G + KRG    GG A + +  GG  +G   R+D  A  +G     S+ P RT 
Sbjct: 102 QQQKTKNGGSAKRG----GGGAHSESNHGGRRSGSGDRRDSNAEERGIVP--SEGPFRTS 155

Query: 305 SRVTY 291
           S ++Y
Sbjct: 156 SVMSY 160

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>Y8K7_ENCCU (Q8SUH9) Hypothetical protein ECU08_2070|
          Length = 619

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 536 EDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           E+R   E  + K    NEE      E EKR   K  GK + G  RG GEA    +++++ 
Sbjct: 329 EERKRREEERAK----NEEELLRMVEREKREESKGRGKKKGG-KRGAGEAKEESKEEDRK 383

Query: 356 SSKG 345
             +G
Sbjct: 384 EEEG 387

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = -1

Query: 467 RGENEKRGHGKDGGKARAGTPRGGGEA-----GISQRQDEQASSKGSSEGRSDPPDRTDS 303
           R  +E+ G G  GG+ R+ +PR    +       S R+    +    S  R D PDR D+
Sbjct: 99  RPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDN 158

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>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1497

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/78 (30%), Positives = 30/78 (38%)
 Frame = -1

Query: 551 QEGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQR 372
           Q+G   D  M  P   +     E   G RGE    G G+ G +  AG P   G  G+   
Sbjct: 607 QKGSVGDPGMEGPMGQRG---REGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGS 663

Query: 371 QDEQASSKGSSEGRSDPP 318
              + SS   S G   PP
Sbjct: 664 VGPKGSS--GSPGPQGPP 679

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>ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
          Length = 1262

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 482 ETRGTRGENEKRGHG---KDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPP 318
           E R   GE + R +G     GG  R  T R GG A   Q+Q   AS     +   DPP
Sbjct: 27  EHRAAWGEADSRANGYPHAPGGSTRGSTKRSGG-AVTPQQQQRLASRWRGGDDDEDPP 83

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 476  RGTRGENEKRGH-GKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEG 333
            RG RGE  +RG  G+DG     GTP   G  G     DE        +G
Sbjct: 2060 RGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQG 2108

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>INHA_HORSE (P55101) Inhibin alpha chain precursor|
          Length = 367

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +1

Query: 277 SHSIGYVTLESVLSGGSDRPSELPLLLACSSWRWLMPASPPPRGVPARAFPPSLPWP 447
           +H +  + L   L   S RP   P L+A +       A PP  G   R   P LPWP
Sbjct: 191 THPVLVLLLRCPLCSCSARPEATPFLVAHTR------ARPPSGGERTRRSTPPLPWP 241

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>CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQ-DEQASSKGSSEG 333
           G R E+      ++GG+A AG  + GG+AG    Q   QA + G+  G
Sbjct: 202 GARAEDGAPAGNREGGQAGAGGNQAGGQAGAGGNQAGGQAGAGGNQAG 249

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>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 709

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/78 (30%), Positives = 30/78 (38%)
 Frame = -1

Query: 551 QEGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQR 372
           Q+G   +  M  P   K     E   G RGE    G G+ G +  AG P   G  G+   
Sbjct: 608 QKGSVGEPGMEGPMGQKG---REGPMGPRGEPGPPGFGEKGDRGAAGEPGVQGPPGVPGS 664

Query: 371 QDEQASSKGSSEGRSDPP 318
              + S  G S G   PP
Sbjct: 665 VGPKGS--GGSPGPRGPP 680

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>ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
          Length = 1264

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 482 ETRGTRGENEKRGHG---KDGGKARAGTPRGGGEAGISQRQDEQ-ASSKGSSEGRSDPP 318
           E R   GE + R +G     GG AR  T + GG     Q+Q +Q  +S+   +   +PP
Sbjct: 27  EHRSAWGEADSRANGYPHAPGGSARGSTKKPGGAVTPQQQQQQQRLASRWRGDDDDEPP 85

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>PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 110

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -1

Query: 488 NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRT 309
           NEE      +NE     ++GG+       G GE       +E  S+ G      D  D  
Sbjct: 40  NEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDV 99

Query: 308 DSR 300
           D++
Sbjct: 100 DTK 102

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>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 379  LMPASPPPRGVPARAFPPSLP-WPRFSFSPRVPLVSSFQ 492
            L P+ P    +P + FPP+LP W R  ++P  PLV S++
Sbjct: 2265 LEPSIPSEYMLPKKRFPPALPAWARPDYNP--PLVESWK 2301

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>ATF5_RAT (Q6P788) Cyclic AMP-dependent transcription factor ATF-5|
           (Activating transcription factor 5) (Transcription
           factor ATFx)
          Length = 281

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 379 LMPASPPPRGVPARAFPPSLPWPRFSFSPRVPLVSSFQIQLLF 507
           L P SPPP   PA + P  LP P F   P+ P + +  +  ++
Sbjct: 122 LPPPSPPPPPPPAPSLPLPLPLPTFDL-PQPPTLDTLDLLAVY 163

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>PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 109

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -1

Query: 488 NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRT 309
           NEE      +NE     ++GG+       G GE       +E  S+ G      D  D  
Sbjct: 39  NEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDV 98

Query: 308 DSR 300
           D++
Sbjct: 99  DTK 101

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>NONA_DROLR (Q9GRX4) Protein no-on-transient A|
          Length = 698

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 458 NEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEG 333
           N+  G G  GG    G   GGG  G  Q Q++  ++KG   G
Sbjct: 59  NQNGGGGSVGGGGGGGGGSGGGGGGGGQNQNKNFANKGGFGG 100

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 385 PASPPPRGVPARAFPPSLPWPRFSFSPRVPL 477
           P  PPP G      PP  P PR    PR PL
Sbjct: 388 PPRPPPYGYQRGPLPPPRPTPRPPVPPRGPL 418

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>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 385 PASPPP--RGVPARAFPPSLPWPRFSFSPRVPLVSSFQIQLLF 507
           P +PPP  R    R FP +LP    + SPR  L+S  +  LLF
Sbjct: 24  PRAPPPSPRSARRRPFPAALPGAASARSPREALLSLRERLLLF 66

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>COL13_CAEEL (P20631) Cuticle collagen 13 precursor|
          Length = 316

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRT 309
           G  G ++  G G  G     G P   G+AG +  QD ++ S+G+ +    PP RT
Sbjct: 261 GQAGSSQPGGPGPQGDAGAPGAPGAPGQAG-APGQDGESGSEGACD--HCPPPRT 312

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>COL12_CAEEL (P20630) Cuticle collagen 12 precursor|
          Length = 316

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDRT 309
           G  G ++  G G  G     G P   G+AG +  QD ++ S+G+ +    PP RT
Sbjct: 261 GQAGSSQPGGPGPQGDAGAPGAPGAPGQAG-APGQDGESGSEGACD--HCPPPRT 312

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -1

Query: 479 TRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSD---PPDRT 309
           +RG RG+   RG G+ G   R G  +GG         D+     G S  RSD   P  ++
Sbjct: 331 SRGGRGKGMGRGRGRGG---RGGMSKGGMNDDEDFYDDDMGDGGGGSYRRSDHDKPHQQS 387

Query: 308 DSR 300
           D +
Sbjct: 388 DKK 390

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>STC2_MOUSE (O88452) Stanniocalcin-2 precursor (STC-2)|
          Length = 296

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 476 RGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           RG +GE   + H     + R G     G +G S+ +DEQ+
Sbjct: 250 RGAKGERGSKSHPNAHARGRTGGQSAQGPSGSSEWEDEQS 289

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>SPT5H_DROME (Q9V460) Transcription elongation factor SPT5 (dSpt5) (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1078

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = -1

Query: 560 STIQEGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGI 381
           S + +  +ED S+    +  +      +R   G    R   +   ++++G  R G E+  
Sbjct: 7   SNMSDSGSEDGSISNKSQRSARS-KSRSRSRSGSRGSRSVSRSRSRSQSGHSRSGSES-- 63

Query: 380 SQRQDEQASSKGSSEGRSDPP 318
            QR+D +  S  S E   +PP
Sbjct: 64  PQRRDNRGKSDESGEEEEEPP 84

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>LORI_MOUSE (P18165) Loricrin|
          Length = 486

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 446 GHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRS 327
           G+   GG +  G   GGG  G SQ+   Q+   GSS G S
Sbjct: 250 GYSGGGGSSCGGGSSGGGGGGSSQQYQCQSYGGGSSGGSS 289

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>HME2_HUMAN (P19622) Homeobox protein engrailed-2 (Hu-En-2)|
          Length = 333

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 21/49 (42%), Positives = 23/49 (46%)
 Frame = -1

Query: 464 GENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPP 318
           G    RG G  GG+  A    GGG AG S    EQ    GS E R +PP
Sbjct: 91  GAGGGRGGGA-GGEGGASGAEGGGGAGGS----EQLLGSGSREPRQNPP 134

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>FBRL_NEUCR (Q9HE26) Fibrillarin|
          Length = 323

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 446 GHGKDGGKARA-GTPRGGGEAGISQ-RQDEQASSKGSSEGR 330
           G G+ GG  R  G PRGGG  G ++ R   +  +KG + G+
Sbjct: 38  GGGRGGGAPRGRGGPRGGGRGGATRGRGGARGGAKGGAAGK 78

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>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = -1

Query: 473 GTRGENEKRGHGKD------GGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDR 312
           G  G  E+ G   D      GG+  A T   G +AG  Q  D+QAS    + G  D   R
Sbjct: 132 GPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEAR 191

Query: 311 TDSR 300
              R
Sbjct: 192 QGRR 195

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>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = -1

Query: 473 GTRGENEKRGHGKD------GGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPPDR 312
           G  G  E+ G   D      GG+  A T   G +AG  Q  D+QAS    + G  D   R
Sbjct: 132 GPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEAR 191

Query: 311 TDSR 300
              R
Sbjct: 192 QGRR 195

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>NCKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1099

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 26/76 (34%), Positives = 36/76 (47%)
 Frame = -1

Query: 551 QEGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQR 372
           QE  AE  S GE P  +      ET G  GE E+    K GG+ +   P G GE   +Q 
Sbjct: 744 QEDVAEAESTGEMPGEEG-----ETAG-EGETEE----KSGGETQ---PEGEGETE-TQG 789

Query: 371 QDEQASSKGSSEGRSD 324
           + E+   +  +EG+ D
Sbjct: 790 KGEECEDENEAEGKGD 805

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>CD99_MOUSE (Q8VCN6) CD99 antigen precursor (Paired immunoglobin-like type 2|
           receptor-ligand) (PILR-L)
          Length = 175

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 473 GTRGENEKRGHGKDGGKARAGTPRG 399
           G RG  ++ GHG  GG    GTP+G
Sbjct: 113 GRRGSGDEGGHGGAGGAEPEGTPQG 137

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>KR1_BHV1S (Q08097) Serine/threonine-protein kinase (EC 2.7.11.1)|
          Length = 467

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 440 GKDGGKARAGTPRGGGEAGISQR----QDEQASSKGSSEGRSDPPDRTDS 303
           G +GG A AG  +GG  AG  +R     +++++S G +E  S+    ++S
Sbjct: 80  GIEGGAAVAGNEQGGVAAGNERRAATGDEKESASGGENESESESESESES 129

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>IF2_ENTFC (P18311) Translation initiation factor IF-2|
          Length = 784

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -1

Query: 536 EDRSMGEPP----KNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQ 369
           +DR  G       KN+S   N    G      ++G  + G + R G+ +GG        Q
Sbjct: 92  QDRGQGSGQVNQGKNQSTNQNRSNNGGGNNQNRQGATQSGNQNRQGSTQGG-------NQ 144

Query: 368 DEQASSKGSSEGRSDPPDR 312
           + Q S++G ++ R++  +R
Sbjct: 145 NRQGSNQGGNQNRNNNNNR 163

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 548  EGRAEDRSMGEPPKNKS*I*NEETRGTR-GENEKRGHGKDGGKARAGTPRGGG 393
            +G   D   G PP + +      +RG R G N  RG   + G  R G  RGGG
Sbjct: 1286 DGYHRDEPFGGPPGSGT-----PSRGGRSGSNWGRGSNMNSGPPRRGASRGGG 1333

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 461 ENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKGSSEGRSDPP 318
           E E     ++G   R  TPRGGG+ G   R   Q  + GS    S  P
Sbjct: 29  EGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVSP 76

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 476  RGTRGENEKRGHGKDGGKA---RAGTPRGGGEAG 384
            RG  G   + G G+ GG+A     G P GGG AG
Sbjct: 1442 RGRGGRGGRGGRGRGGGRAPRGGGGGPGGGGRAG 1475

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>CSP_PLACC (P08673) Circumsporozoite protein precursor (CS)|
          Length = 398

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 488 NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAG 384
           N    G  G N   G    GG  RAG     GEAG
Sbjct: 234 NNAAAGAAGNNAAAGEAGAGGAGRAGNNAAAGEAG 268

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>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD5) (CHD-5)
          Length = 1954

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 WRWLMPASPPPRGVPARAFPPSLPWPR 450
           WRW  P +P   G+P     PSLP P+
Sbjct: 475 WRWTEPPAPFMVGLPGPDVEPSLPPPK 501

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>STC2_PONPY (Q5RAT2) Stanniocalcin-2 precursor (STC-2)|
          Length = 302

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 EETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           E  RG +GE   + H     + R G     G +G S+ +DEQ+
Sbjct: 253 ETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQS 295

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>STC2_MACNE (O97561) Stanniocalcin-2 precursor (STC-2)|
          Length = 302

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 EETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           E  RG +GE   + H     + R G     G +G S+ +DEQ+
Sbjct: 253 ETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQS 295

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>STC2_HUMAN (O76061) Stanniocalcin-2 precursor (STC-2) (Stanniocalcin-related|
           protein) (STCRP) (STC-related protein)
          Length = 302

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 EETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           E  RG +GE   + H     + R G     G +G S+ +DEQ+
Sbjct: 253 ETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQS 295

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>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +1

Query: 385 PASPPP----RGVPARAFPPSLPWPRFSFSPR-VPLVSS 486
           P SPP     R  P+R  PPSLP PR +  PR  P++SS
Sbjct: 551 PRSPPLPAVIRNAPSR--PPSLPTPRPASQPRKAPVISS 587

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>VE2_BPV6 (Q705F3) Regulatory protein E2|
          Length = 435

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
 Frame = -1

Query: 557 TIQEGRAEDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGK-ARAGTPRGGGEAGI 381
           ++   R+  RS    P       +   R  +     +  G+ GG+    G  RGGG  G+
Sbjct: 255 SLSRSRSRSRSRSRSPSGS----HARQRAPQDSGTNKSPGRQGGRRGDGGGGRGGGGGGV 310

Query: 380 SQRQDEQASSKGSSEGR-----SDPPDRTDSRV 297
             R+D          GR     +  P++T  R+
Sbjct: 311 RVREDTFGGQPTQIAGRLGDRPAKAPEQTSRRL 343

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>SCR_DROME (P09077) Homeotic protein Sex combs reduced|
          Length = 417

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 458 NEKRGHGKDGGKARAGTPR---GGGEA-GISQRQDEQASSKGSSEGRSDPP 318
           N   G G  GG      P    GGG++   S   +E  SS+ S  G+ +PP
Sbjct: 252 NNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPP 302

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>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)|
           (Fragment)
          Length = 336

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -1

Query: 452 KRGHGKDGGKARAGTPRGGGEAGISQRQDEQASSKG------SSEGRSDPP 318
           +RG G  GG+  A T R GG  G  +R+   A +KG      + EG+  PP
Sbjct: 93  RRGGGGGGGQIAARTRRRGG--GRMERKGSAAGAKGNPSPPAAGEGQRPPP 141

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>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 382 MPASPPPRGVPAR---AFPPSLPWPRFSFSPRVPLV 480
           +P  PPPRG P R     PP +P PR     R PLV
Sbjct: 478 LPPGPPPRGPPPRLPPPAPPGIPPPRPGMM-RPPLV 512

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>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 382 MPASPPPRGVPAR---AFPPSLPWPRFSFSPRVPLV 480
           +P  PPPRG P R     PP +P PR     R PLV
Sbjct: 478 LPPGPPPRGPPPRLPPPAPPGIPPPRPGMM-RPPLV 512

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>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 382 MPASPPPRGVPAR---AFPPSLPWPRFSFSPRVPLV 480
           +P  PPPRG P R     PP +P PR     R PLV
Sbjct: 478 LPPGPPPRGPPPRLPPPAPPGIPPPRPGMM-RPPLV 512

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>Y2F4_ENCCU (Q8SW86) Hypothetical protein ECU02_1540|
          Length = 616

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -1

Query: 536 EDRSMGEPPKNKS*I*NEETRGTRGENEKRGHGKDGGKARAGTPRGGGEAGISQRQDEQA 357
           E+R   E  + K    NEE      E EKR   K  GK + G  RG GEA    ++++  
Sbjct: 329 EERKRREEERAK----NEEELLRMVEREKREESKGRGKKKGG-KRGAGEAKEESKEEDGK 383

Query: 356 SSKG 345
             +G
Sbjct: 384 EEEG 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,111,265
Number of Sequences: 219361
Number of extensions: 1682493
Number of successful extensions: 7130
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 5717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7017
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result