ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags26h05 |
|---|---|
| Clone Library Name | barley_pub |
>SYM_BACST (P23920) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 649 Score = 33.5 bits (75), Expect = 0.48 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 13 TETGXIDGYIPDNGKAMRQITEKQIEFRFIFYLERILNY 129 TE +DG PD G+ + ++ E+ FR Y++R+L Y Sbjct: 136 TERQLVDGNCPDCGRPVEKVKEESYFFRMSKYVDRLLQY 174
>SYM_THETN (Q8RDD1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 638 Score = 33.1 bits (74), Expect = 0.62 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +1 Query: 13 TETGXIDGYIPDNGKAMRQITEKQIEFRFIFYLERILNY 129 TE+ +DG PD G+ + ++TE+ FR Y +++L Y Sbjct: 135 TESQLVDGKCPDCGRPVERVTEEGYFFRLSAYGDKLLKY 173
>SYM_CLOAB (Q97EW5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 644 Score = 32.7 bits (73), Expect = 0.81 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1 Query: 13 TETGXIDGYIPDNGKAMRQITEKQIEFRFIFYLERILNYI 132 TET +DG PD G+ + + E+ F+ Y +R++ YI Sbjct: 137 TETQLVDGKCPDCGRPVEKTKEEAYFFKMSKYADRLIKYI 176
>SYSC_SCHPO (O14018) Seryl-tRNA synthetase, cytoplasmic (EC 6.1.1.11)| (Serine--tRNA ligase) (SerRS) Length = 450 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -2 Query: 513 SDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYE 355 S+ QSR ++ K+ GDR + + VH L T+ ATE A CC L Y+ Sbjct: 363 SNCTDYQSRNLEIRCGVKKM--GDREK-KYVHCLNSTLCATERALCCILENYQ 412
>CMT1_CRYNE (Q6U1Z4) Alpha-1,3-mannosyltransferase CMT1 (EC 2.4.1.-)| Length = 466 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/67 (29%), Positives = 30/67 (44%) Frame = -2 Query: 594 EHLGIMLSVHTAFSDRASALLTVQTLMSDLASLQSRIEKLEAASSKVFGGDRTRLRKVHE 415 EHL + + + A+ V M D L+S ++E SK+ G R+ K+ E Sbjct: 159 EHLAVSILEGPSSDCTQKAIEQVLKPMLDDQGLESAWTRIETGESKIDWGKHNRIEKIAE 218 Query: 414 LRETIRA 394 LR T A Sbjct: 219 LRNTALA 225
>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41| Length = 692 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 6/85 (7%) Frame = -2 Query: 579 MLSVH-TAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFGGDRTRLRKVH 418 +LSV T S R L+ +T L+ L SL++ + +L A + ++V R ++R++ Sbjct: 189 LLSVDPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLA 248 Query: 417 ELRETIRATEDAKCCALREYERIKE 343 E++ T+R+ E K A + ER+++ Sbjct: 249 EMQATLRSLEAEKQSAKLQAERLEK 273
>SYM_CLOPE (Q8XHG1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 645 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 13 TETGXIDGYIPDNGKAMRQITEKQIEFRFIFYLERILNYI 132 TET ++G PD G+ + + E+ F+ Y +R++ YI Sbjct: 136 TETQLVNGNCPDCGRPVEKAKEEAYFFKMSKYADRLIQYI 175
>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41| Length = 692 Score = 30.4 bits (67), Expect = 4.0 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 6/85 (7%) Frame = -2 Query: 579 MLSVH-TAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFGGDRTRLRKVH 418 +LSV T S R L+ +T L+ L SL++ + +L A + ++V R ++R++ Sbjct: 189 LLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLA 248 Query: 417 ELRETIRATEDAKCCALREYERIKE 343 E++ T+R+ E K A + ER+++ Sbjct: 249 EMQATLRSLEAEKQSAKLQAERLEK 273
>SYS_ARATH (Q39230) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 451 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -2 Query: 531 TVQTLMSDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYER 352 T + L+S + +LE + ++T+ + VH L T+ ATE CC L Y+R Sbjct: 355 TFRELVSCSNCTDYQARRLEIRYGQKKSNEQTK-QYVHMLNSTLTATERTICCILENYQR 413
>YCF1_LOTJA (Q9BBN6) Hypothetical 214.8 kDa protein ycf1| Length = 1793 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -2 Query: 465 SSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYERIKENNK 334 SSK+F + +RK EL+ + E AK +E E+IK+N K Sbjct: 705 SSKIFFMFKNWIRKKKELKNSDYTDEKAKESQKKEEEKIKKNEK 748
>SYS_HELAN (O81983) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 438 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = -2 Query: 513 SDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYERIK 346 S+ QSR KLE + G ++ + + H L T+ ATE CC L Y+ K Sbjct: 360 SNCTDYQSR--KLEIRCGQKKGNEQAK-QYCHLLNSTLTATERTLCCILENYQTEK 412
>SKP_PHOLL (Q7N8N8) Chaperone protein skp precursor| Length = 165 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -2 Query: 582 IMLSVHTAFSDRASALLTVQTLMSDLASLQSRIEKLEAASSKVFGGDRTRLRK 424 ++ + F +RAS L ++T LQS+I+KL+ S + +RT L K Sbjct: 44 VVKQLENEFKNRASELQRMET------DLQSKIQKLQRDGSTMKSSERTNLEK 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,850,714 Number of Sequences: 219361 Number of extensions: 1283169 Number of successful extensions: 3043 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3042 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
