ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL512639.8| Human DNA sequence from clone RP11-346G21 on chr... 42 1.00
2gb|AC123728.8| Mus musculus chromosome 3, clone RP23-453L19, com... 40 3.9
3emb|AL139318.9| Human DNA sequence from clone RP11-124B17 on chr... 40 3.9
4gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, comp... 40 3.9

>emb|AL512639.8| Human DNA sequence from clone RP11-346G21 on chromosome 9, complete
             sequence
          Length = 164774

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   caaattatatctacaaatgtt 167
             |||||||||||||||||||||
Sbjct: 83887 caaattatatctacaaatgtt 83907



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>gb|AC123728.8| Mus musculus chromosome 3, clone RP23-453L19, complete sequence
          Length = 161887

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gatgcaataccaaattatat 156
             ||||||||||||||||||||
Sbjct: 86710 gatgcaataccaaattatat 86729



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>emb|AL139318.9| Human DNA sequence from clone RP11-124B17 on chromosome 13 Contains the
              DCT gene for dopachrome tautomerase (dopachrome
              delta-isomerase, tyrosine-related protein 2) (TYRP2), the
              3' end of the gene for dTDP-D-glucose 4,6-dehydratase
              (TDPGD) and a CpG island, complete sequence
          Length = 160004

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    aaattatatctacaaatgtt 167
              ||||||||||||||||||||
Sbjct: 133745 aaattatatctacaaatgtt 133726



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>gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, complete sequence
          Length = 164720

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aataccaaattatatctaca 161
             ||||||||||||||||||||
Sbjct: 87448 aataccaaattatatctaca 87467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,920,507
Number of Sequences: 3902068
Number of extensions: 1920507
Number of successful extensions: 29768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29763
Number of HSP's gapped (non-prelim): 5
length of query: 300
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 278
effective length of database: 17,147,199,772
effective search space: 4766921536616
effective search space used: 4766921536616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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