ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26g20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M4K2_MOUSE (Q61161) Mitogen-activated protein kinase kinase kina... 31 1.9
2TRPG_THEMA (Q08654) Anthranilate synthase component II (EC 4.1.3... 31 2.5
3GBLP_HYDAT (Q25189) Guanine nucleotide-binding protein beta subu... 29 7.2
4STP2_BOVIN (P26377) Nuclear transition protein 2 (TP-2) (TP2) 29 9.3
5AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adapti... 29 9.3

>M4K2_MOUSE (Q61161) Mitogen-activated protein kinase kinase kinase kinase 2|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 2) (MEK
           kinase kinase 2) (MEKKK 2) (Germinal center kinase)
           (GCK) (Rab8-interacting protein)
          Length = 821

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 333 GRPVLSPTSWHWLLFPPLQERQSCHGL 413
           G P L PT+W  L     +ER SCHGL
Sbjct: 437 GSPALLPTAWATLKQQEDRERSSCHGL 463



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>TRPG_THEMA (Q08654) Anthranilate synthase component II (EC 4.1.3.27)|
           [Includes: Glutamine amidotransferase; Anthranilate
           phosphoribosyltransferase (EC 2.4.2.18)]
          Length = 589

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/88 (22%), Positives = 35/88 (39%)
 Frame = +1

Query: 115 YSPLVYRRLGFVSSLHAD*CVLAMNTASARDRVILKRSENNNPDMLAAALAVGSPVLLNC 294
           Y   VY  + ++  +  D C + +      D + ++  E  NP  +  +   G P     
Sbjct: 53  YDSFVYNIVQYIGEVEPD-CEIEV---FRNDEITIEEIERKNPTHIVISPGPGRPEEAGI 108

Query: 295 KEDLLRHTRAALMVGQCCLPPHGIGYFF 378
             D++RH    + +   CL    IGY F
Sbjct: 109 SVDVVRHFSGKVPILGVCLGHQVIGYAF 136



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>GBLP_HYDAT (Q25189) Guanine nucleotide-binding protein beta subunit-like|
           protein (Receptor of activated protein kinase C) (RACK)
          Length = 317

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -1

Query: 375 KVANAMRWETTLADH----EGGPRVPEKILFAVKQYWTADSKSRR*HVWIIVLASLQDNS 208
           K  NAM W+     H    +GG  V   + F+  +YW   +      +W + + S+ D  
Sbjct: 212 KDGNAMLWDLNEGKHLYTLDGG-NVINALCFSPNRYWLCAATGPMIKIWDLEMKSVVDEL 270

Query: 207 VPGTGSVHCK 178
            PG   +  K
Sbjct: 271 KPGVIGISTK 280



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>STP2_BOVIN (P26377) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 131

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 22/78 (28%), Positives = 28/78 (35%)
 Frame = +3

Query: 174 CTCNEHCQCQGQSYPEEKREQ*SRHVSGGSCCRQSSIA*LQRGSSQAHEGRPHGRPVLSP 353
           C+C++HCQ              SR  S     R SS       S   H+GR   +P    
Sbjct: 29  CSCSQHCQ--------------SRSRSRSCRSRSSSRRPRSHRSPTGHQGRARPQPSSEA 74

Query: 354 TSWHWLLFPPLQERQSCH 407
              H  L PP+  R   H
Sbjct: 75  PQTHHAL-PPVSSRPVTH 91



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>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 683

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 124 LVYRRLGFVSSLHAD*CVLAMNTASARDRVILKRSENNNPDMLAAALAVGSPVLLN 291
           LVY  L   +  H D C+LA+NT        +K SE  NP + A A+     + +N
Sbjct: 72  LVYLYLINYAKTHPDLCILAVNT-------FVKDSEEYNPTLRALAIRTMGCIRVN 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,666,519
Number of Sequences: 219361
Number of extensions: 1483429
Number of successful extensions: 3627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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