ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UTP11_ORYSA (Q8S1Z1) Probable U3 small nucleolar RNA-associated ... 32 1.0
2EDG6_HUMAN (O95977) Sphingosine 1-phosphate receptor Edg-6 (S1P ... 30 3.1
3ACSA_CRYPV (Q27549) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (A... 30 4.0

>UTP11_ORYSA (Q8S1Z1) Probable U3 small nucleolar RNA-associated protein 11 (U3|
           snoRNA-associated protein 11)
          Length = 229

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 419 NSVKQPVYKWRAQRKR 372
           N   +PVYKWRAQRKR
Sbjct: 214 NQTSRPVYKWRAQRKR 229



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>EDG6_HUMAN (O95977) Sphingosine 1-phosphate receptor Edg-6 (S1P receptor|
           Edg-6) (Endothelial differentiation G-protein coupled
           receptor 6) (Sphingosine 1-phosphate receptor 4) (S1P4)
          Length = 384

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 319 CPTPHPLLSNIFITFCLVIFADIVPETMYCY*SI 218
           C +  PL S  +I FCLVIFA ++   M  Y +I
Sbjct: 193 CSSLLPLYSKRYILFCLVIFAGVLATIMGLYGAI 226



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>ACSA_CRYPV (Q27549) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 694

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -1

Query: 305 SIAFKYLYNLLPGDICGYCAGD 240
           ++  KYL+N+ PGDI G CAGD
Sbjct: 322 AVTQKYLFNIHPGDIFG-CAGD 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,830,098
Number of Sequences: 219361
Number of extensions: 1158853
Number of successful extensions: 2240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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