ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26g17 |
|---|---|
| Clone Library Name | barley_pub |
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 108 bits (269), Expect = 2e-23 Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 23/160 (14%) Frame = -2 Query: 606 AKYIEWEGLSKMRFSQLNKLNT---------------TCKKALKSYNSLDSPTADVS--- 481 AK W + + R +Q N+L++ C+KA + N +D V Sbjct: 152 AKKKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEEN-VDESRGRVQLAG 210 Query: 480 -----EEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILD 316 ++ + ++DE+F + + ++PD+LC KI+ ++ R+P ITPSGITY+R I + Sbjct: 211 IEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEE 270 Query: 315 HLNRVGKFDPVTREALEPHQLISNLAVKEAVDVFLNEHGW 196 HL RVG FDPVTR L QLI NLA+KE +D F++E+GW Sbjct: 271 HLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGW 310
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 104 bits (259), Expect = 2e-22 Identities = 46/95 (48%), Positives = 68/95 (71%) Frame = -2 Query: 480 EEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRV 301 ++ + ++DE+F + + ++PD+LC KI+ ++ R+P ITPSGITY+R I +HL RV Sbjct: 206 DKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV 265 Query: 300 GKFDPVTREALEPHQLISNLAVKEAVDVFLNEHGW 196 G FDPVTR L QLI NLA+KE +D F++E+GW Sbjct: 266 GHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 300
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 104 bits (259), Expect = 2e-22 Identities = 46/95 (48%), Positives = 68/95 (71%) Frame = -2 Query: 480 EEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRV 301 ++ + ++DE+F + + ++PD+LC KI+ ++ R+P ITPSGITY+R I +HL RV Sbjct: 205 DKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV 264 Query: 300 GKFDPVTREALEPHQLISNLAVKEAVDVFLNEHGW 196 G FDPVTR L QLI NLA+KE +D F++E+GW Sbjct: 265 GHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -2 Query: 423 PTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISN 244 P +PD C I+L++ +DPVI +G TYERA I + P T++ + L N Sbjct: 270 PITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPN 329 Query: 243 LAVKEAVDVFLNEHG 199 ++ + + +G Sbjct: 330 YVLRSLISQWCETNG 344
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/72 (31%), Positives = 40/72 (55%) Frame = -2 Query: 414 VPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAV 235 +P++ C I+L++ +DPVI +G TYER+ I L+ K P ++E L L N + Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307 Query: 234 KEAVDVFLNEHG 199 K + ++ +G Sbjct: 308 KSLIALWCESNG 319
>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 1010 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = -2 Query: 525 LKSYNSLDSPTADVSEEQINELDEVFR--KAAKADTPTEVPDHLCCKITLDIFRDPVITP 352 + +N S + +E +N + E FR +A + + ++PD+ + I +DPV+ P Sbjct: 893 MTKHNLKSSFDIEAIKEFVNRV-EAFRLQEATEEEDMGDIPDYFLDPLMFTIMKDPVVLP 951 Query: 351 -SGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAVDVFL 211 SGI+ +R+ I HL DP R L + N ++E ++ FL Sbjct: 952 RSGISIDRSTIKAHL-LSDATDPFNRTPLTLDDVTPNDTLREEINTFL 998
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = -2 Query: 465 ELDEVFRKAAKADTP-TEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFD 289 +++E+ K A+A+ ++ PD + + DPV PSG +R++IL HL D Sbjct: 1081 KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTD 1139 Query: 288 PVTREALEPHQLISNLAVKEAVDVFLNE 205 P R+ L L +KE + ++ E Sbjct: 1140 PFNRQMLTESMLEPVPELKEQIQAWMRE 1167
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = -2 Query: 465 ELDEVFRKAAKADTP-TEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFD 289 +++E+ K A+A+ ++ PD + + DPV PSG +R++IL HL D Sbjct: 1210 KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTD 1268 Query: 288 PVTREALEPHQLISNLAVKEAVDVFLNE 205 P R+ L L +KE + ++ E Sbjct: 1269 PFNRQTLTESMLEPVPELKEQIQAWMRE 1296
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 37.4 bits (85), Expect = 0.034 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Frame = -2 Query: 498 PTADVSEEQINE------LDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITP-SGIT 340 PT D I + L E +++ D P +PD L C I DI D V+ P G + Sbjct: 221 PTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDP--IPDELLCLICKDIMTDAVVIPCCGNS 278 Query: 339 YERAVILDHLNRVGKFDPVT--REALEPHQLISNLAVKEAVDVFLNEHGWAYKIR 181 Y I L + T + + P LI+N +++AV+ F NE G+ ++R Sbjct: 279 YCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLR 333
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 37.4 bits (85), Expect = 0.034 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Frame = -2 Query: 498 PTADVSEEQINE------LDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITP-SGIT 340 PT D I + L E +++ D P +PD L C I DI D V+ P G + Sbjct: 222 PTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDP--IPDELLCLICKDIMTDAVVIPCCGNS 279 Query: 339 YERAVILDHLNRVGKFDPVT--REALEPHQLISNLAVKEAVDVFLNEHGWAYKIR 181 Y I L + T + + P LI+N +++AV+ F NE G+ ++R Sbjct: 280 YCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLR 334
>RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugating enzyme| 7-interacting protein 5) (U-box domain-containing protein 5) Length = 541 Score = 36.6 bits (83), Expect = 0.059 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Frame = -2 Query: 504 DSPTADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAV 325 D P + + + +L E+ + +VP+ ITL+I P++ PSG +++ Sbjct: 238 DQPESQQAPSSLQKLAEIIQ---------DVPEEFLDPITLEIMPCPMLLPSGKVIDQST 288 Query: 324 ILDHLNRV----GKF--DPVTREALEPH-QLISNLAVKEAVDVFLNEH 202 L+ NR G+ DP T A PH Q + + ++K +D FL +H Sbjct: 289 -LEKCNRSEATWGRVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQH 335
>TRAF7_HUMAN (Q6Q0C0) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) (Ring finger and WD repeat domain 1) (RING finger protein 119) Length = 670 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = -2 Query: 402 LCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAV 223 LCC++ +F+DPVIT G T+ R L K + + ++ +++N+AV E + Sbjct: 129 LCCQLCCSVFKDPVITTCGHTFCRRCAL-------KSEKCPVDNVKLTVVVNNIAVAEQI 181 Query: 222 -DVFLN-EHG 199 ++F++ HG Sbjct: 182 GELFIHCRHG 191
>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 411 Score = 33.9 bits (76), Expect = 0.38 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = -2 Query: 444 KAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALE 265 K +K E+ D L C I D ++PV+TP G T+ I +L+ K P+ L Sbjct: 11 KKSKVPQLQELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKC-PLCLHELR 69 Query: 264 PHQLISNLAVKEAVDVF 214 L S V E + + Sbjct: 70 ESMLRSEYLVNEITETY 86
>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 418 Score = 33.1 bits (74), Expect = 0.65 Identities = 23/65 (35%), Positives = 33/65 (50%) Frame = -2 Query: 402 LCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAV 223 L C++ D F +PVIT T+ I L+ GK P R + + +L N AV+E V Sbjct: 28 LRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKC-PACRSSDQELKLRRNWAVQELV 86 Query: 222 DVFLN 208 + F N Sbjct: 87 EAFQN 91
>TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) Length = 594 Score = 33.1 bits (74), Expect = 0.65 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -2 Query: 402 LCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAV 223 LCC++ +F+DPVIT G T+ R L K + + + +++N+AV E + Sbjct: 53 LCCQLCCSVFKDPVITTCGHTFCRRCAL-------KSEKCPVDNAKLTVVVNNIAVAEQI 105 Query: 222 -DVFLN-EHG 199 ++F++ HG Sbjct: 106 GELFIHCRHG 115
>PPIL2_GIBZE (Q4IBK5) Peptidyl-prolyl cis-trans isomerase-like 2 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-60) (Cyclophilin-like protein Cyp-60) Length = 588 Score = 32.7 bits (73), Expect = 0.85 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -2 Query: 396 CKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLI 250 C +L F++PV TP G ++ VI L + +PVT E L+ LI Sbjct: 47 CAASLQPFKNPVCTPDGTIFDVEVIGVWLEKHPNQNPVTGEPLQKKDLI 95
>PPIL2_NEUCR (Q7RXA6) Peptidyl-prolyl cis-trans isomerase-like 2 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-60) (Cyclophilin-like protein Cyp-60) Length = 597 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -2 Query: 396 CKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLI 250 C +L F++PV TP G ++ VI L + K +PVT E L LI Sbjct: 48 CAASLQPFKNPVCTPDGTIFDVEVIGSWLEK-HKTNPVTGEPLSAKDLI 95
>LNX1_HUMAN (Q8TBB1) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-protein X 1) Length = 728 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = -2 Query: 423 PTEVPDHLCCKITLDIFRDPVITPSGITY 337 P EV D L C I L DP+ TP G TY Sbjct: 32 PEEVDDDLICHICLQALLDPLDTPCGHTY 60
>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III| Length = 160 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -2 Query: 408 DHLCCKITLDIFRDPVITPSGITYERAVILDHLN 307 + CC + LD F +P I G +Y R I HLN Sbjct: 4 EDFCCAVCLDFFVEPCIIECGHSYCRFCIESHLN 37
>A33_PLEWA (Q02084) Zinc-binding protein A33| Length = 624 Score = 31.6 bits (70), Expect = 1.9 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 19/147 (12%) Frame = -2 Query: 600 YIEWEGLSKMRFSQLNKLNTTCKKALKS--YNSLDSPTADVSEE-----------QINEL 460 Y+ + GL++ + ++K K +K+ N+ + T VS++ +I + Sbjct: 81 YVHYVGLNRRQNEWVDKSRVLQAKQIKTEELNNTEDETNGVSDQSEGKAARSNKRKIEDG 140 Query: 459 DEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKF---- 292 D +K D + + L C + +F++PVI G + + I F Sbjct: 141 DGDQKKRKVDDEEDDFTEDLTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPE 200 Query: 291 --DPVTREALEPHQLISNLAVKEAVDV 217 + +T +++++NL K AV V Sbjct: 201 CKEVLTERKYTTNRVLANLVKKAAVGV 227
>EPL1_GIBZE (Q4I5V3) Enhancer of polycomb-like protein 1| Length = 644 Score = 31.6 bits (70), Expect = 1.9 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Frame = -2 Query: 579 SKMRFSQLNKLNTTC--------KKALKSYNSLDSPTADVSEEQINELDEVFRKAAKADT 424 S +RFSQ + TC + LK YNS T +SE+ + EVF A T Sbjct: 93 SYIRFSQTVEECITCLYDMTTEDDEFLKQYNSKPPATGVLSEDDFEHIMEVFEDTAAEQT 152 Query: 423 PTEVPDH 403 P D+ Sbjct: 153 PFAAVDN 159
>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6| Length = 530 Score = 31.2 bits (69), Expect = 2.5 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Frame = -2 Query: 540 TCKKALKSYNSLDSPTADVSEEQINE--LDEVFRKAAKADTPTEVPDHLCCKITLDIFRD 367 +C A+K DS + S ++ ++E+ + D P E C I L R+ Sbjct: 26 SCSAAVKD----DSVSGSASTGNLSSSFMEEIQGYDVEFDPPLESKYE--CPICLMALRE 79 Query: 366 PVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLI-SNLAVKEAVDV 217 V TP G + +A I+ + G PV E L +QL N A +E + + Sbjct: 80 AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 130
>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal| transducer) (RING finger protein 85) Length = 522 Score = 30.8 bits (68), Expect = 3.2 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Frame = -2 Query: 495 TADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILD 316 TA + ++E+ + D P E C I L R+ V TP G + +A I+ Sbjct: 39 TASTGNLSSSFMEEIQGYDVEFDPPLESKYE--CPICLMALREAVQTPCGHRFCKACIIK 96 Query: 315 HLNRVGKFDPVTREALEPHQLI-SNLAVKEAVDVFL 211 + G PV E L +QL N A +E + + + Sbjct: 97 SIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 132
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)| Length = 609 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Frame = -2 Query: 507 LDSPTADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERA 328 ++ P + + ++ E D + A+ + + L C + +++F+DPV+ G + R+ Sbjct: 109 IEEPEPEPKKAKVEEKD-ASKNASSLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRS 167 Query: 327 VILDHLNRVGKFD-PVTREALEP-----HQLISNLAVKEA 226 I F P RE++ +++++NLA K A Sbjct: 168 CIDKAWEGQSSFACPECRESITDRKYTINRVLANLAKKAA 207
>RPM2_YEAST (Q02773) Ribonuclease P protein component, mitochondrial precursor| (EC 3.1.26.5) (RNase P) Length = 1202 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +1 Query: 1 HAYFLTHVPMTNSMHDPIQFNNTHSMYNFLDVNKKTTEP 117 H Y+ T + + +DP+ F+N NF D++ KT++P Sbjct: 119 HRYYSTGPTLPTNQYDPLNFSNR----NFQDLSLKTSQP 153
>RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1057 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Frame = -2 Query: 423 PTEVPDHLC----CKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQ 256 PTEVP L C++ + DPV +P + R I+ + + +G P + L P Sbjct: 283 PTEVPADLIRAVTCQVCDHLLSDPVQSPCRHLFCRLCIIRYTHALGPNCPTCNQHLNPSH 342 Query: 255 LI 250 LI Sbjct: 343 LI 344
>RNF37_MOUSE (Q925F4) RING finger protein 37 (Ubiquitin-conjugating enzyme| 7-interacting protein 5) (UbcM4-interacting protein 5) (U-box domain-containing protein 5) Length = 539 Score = 30.4 bits (67), Expect = 4.2 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%) Frame = -2 Query: 432 ADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLN-------RVGKFDPVTRE 274 ++ ++VP+ ITL+I P++ PSG +++ L+ N RV DP T Sbjct: 253 SEVESDVPEEFLDPITLEIMPCPMLLPSGKVIDQST-LEKCNLSEAAWGRVPS-DPFTGL 310 Query: 273 ALEPH-QLISNLAVKEAVDVFLNEH 202 A P Q + + ++K +D FL +H Sbjct: 311 AFTPQSQPLPHPSLKARIDRFLLQH 335
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = -2 Query: 507 LDSPTADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERA 328 L+ P + + ++ + D + AA + + L C + +++F+DPV+ G + R+ Sbjct: 110 LEEPEPEPKKAKVEDKD-ASKTAASLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRS 168 Query: 327 VILDHLNRVGKF------DPVTREALEPHQLISNLAVKEA 226 I F + +T +++++NLA K A Sbjct: 169 CIDKVWEGQSSFACPECKESITDRKYTINRVLANLAKKAA 208
>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 443 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/65 (33%), Positives = 32/65 (49%) Frame = -2 Query: 402 LCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAV 223 L C++ D F +PVIT T+ I L+ GK P R + + +L N V+E V Sbjct: 28 LRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKC-PTCRSSDQELKLRRNWVVQELV 86 Query: 222 DVFLN 208 + F N Sbjct: 87 EGFKN 91
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 438 AKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVI 322 A D T + + C I LD F DPV+T G + R I Sbjct: 2 AAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECI 40
>RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 344 Score = 30.0 bits (66), Expect = 5.5 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = -2 Query: 417 EVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLA 238 +V + L C I + F P+IT G T+ I +L + P + + QL N+ Sbjct: 21 DVDETLRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQQISQLRKNVT 80 Query: 237 VKEAVDVF 214 V+ V+ F Sbjct: 81 VETLVEHF 88
>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1| homolog) (Iguana protein) Length = 898 Score = 30.0 bits (66), Expect = 5.5 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Frame = -2 Query: 597 IEWEGLSKMRFSQLNKLNTTCKKALKSYNSLDSPTADVSEEQINELDEVFRKAAKADTPT 418 ++W G + ++ + ++ L +S S + S Q+ EL ++ + T Sbjct: 378 VKWTGKMQKMKEDHDREKSLLQEELCKVSSAVSEGMEESRRQVQELSHRLQEQQQIITSQ 437 Query: 417 --EVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLNRVGKFDPV 283 ++ T+ + R+ V TPS T + V+ + N V K DP+ Sbjct: 438 NKQMKQISSKPPTITVQREGVSTPSPETKAKVVVSEQSNSVHKLDPI 484
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 438 AKADTPTEVPDHLCCKITLDIFRDPVITPSGITYERAVI 322 A D T + + C I LD F DPV+T G + R I Sbjct: 2 AAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECI 40
>RECN_AQUAE (O66834) DNA repair protein recN (Recombination protein N)| Length = 520 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = -2 Query: 570 RFSQL-NKLNTTCKKALKSYNSLDSPTADVSEEQINELDE 454 +FS+L K+ ++ + YNSL ++SEE++NE++E Sbjct: 237 KFSELIEKIANLEEEVYELYNSLKEEMPEISEEEVNEINE 276
>NMT_CANGA (O74234) Glycylpeptide N-tetradecanoyltransferase (EC 2.3.1.97)| (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) Length = 451 Score = 30.0 bits (66), Expect = 5.5 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -2 Query: 582 LSKMRFSQLNKLNTTCKKALKSYNSLDSPTADVSEEQINELDEVFRKAAKADTPTE---- 415 L M ++KL +K +K Y + +E++ E + + AD P E Sbjct: 12 LLSMNNGDMSKLTANQRKEMKEYKFWKTQPVTKFDEEVKEEGPIHEEKTPADIPDEPLPL 71 Query: 414 VPDHLCCKITLD 379 +PD C I +D Sbjct: 72 LPDFEWCAIDVD 83
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 29.6 bits (65), Expect = 7.2 Identities = 29/115 (25%), Positives = 51/115 (44%) Frame = -2 Query: 555 NKLNTTCKKALKSYNSLDSPTADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDI 376 N + K ++ ++ L+S ++E+ E + KA + +VP+ I I Sbjct: 863 NAIECMRKNSIVGFSQLES-FEHLAEDVKKEYEA---KAELEEEYDDVPEEFKDPIMDAI 918 Query: 375 FRDPVITPSGITYERAVILDHLNRVGKFDPVTREALEPHQLISNLAVKEAVDVFL 211 DPV PSG +RAVI HL +P R L ++L + +K + ++ Sbjct: 919 MVDPVKLPSGHVMDRAVIERHLLSTPN-NPFNRAPLSHNELSPDSELKAKIQEWI 972
>Y341_HAEIN (P44649) Protein HI0341| Length = 114 Score = 29.3 bits (64), Expect = 9.4 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Frame = -2 Query: 522 KSYNSLDSPTADVSEEQINELDEVFRKAAKADTPTEVPDHLCCKITLDIFRDPVITPSGI 343 KSYN ++E Q EL + T E D T+D F + VI P+G+ Sbjct: 3 KSYNQRQRKKLHLAEFQ--ELGFLVNFQFAEGTAIETVDE-----TVDRFINEVIQPNGL 55 Query: 342 TYERAVILDH-----LNRVGKFDPVTREALEPHQLISNLAVKEAVDVFLNEHGWAY 190 YE + L L ++GK D RE ++ + L E ++F + W Y Sbjct: 56 AYEGSGYLHWEGLVCLEKIGKCDESHRETVKKWLETNGLQQIEVSELF--DIWWEY 109
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 29.3 bits (64), Expect = 9.4 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Frame = -2 Query: 567 FSQLNKLNTTCKKALKSYNSLDSPTADVSEEQINELDEVFRKAAKADTPTEVPDH-LCCK 391 FS+ ++ T+ + + + S + A V E NE+D F + K D T P H L CK Sbjct: 383 FSRTGEMLTSDSASARRHES--NAEAAVVLEVSNEVDGGFSSSRKTDLVTPDPHHTLMCK 440 Query: 390 ITLDIFRDPV---ITPS--GITYERAVILDHLNRV 301 D F PV I+ G +Y+R HLN V Sbjct: 441 SGRD-FSKPVEDNISDKIFGKSYQRKGSRPHLNHV 474
>PPIL2_CRYNE (Q5KAW8) Peptidyl-prolyl cis-trans isomerase-like 2 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-60) (Cyclophilin-like protein Cyp-60) Length = 573 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%) Frame = -2 Query: 399 CCKITLDIFRDPVI----TPSGITYERAVILDHLN-----RVGKFDPVTREALEPHQLI 250 CC ++L F++PV T +G RA + D LN R K +PVT + LE QLI Sbjct: 43 CCALSLQPFKNPVAVISETKAG-EAPRADVFDLLNIVPYIRKFKSNPVTGKPLETSQLI 100
>UL114_HCMVA (P16769) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 250 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 195 PNHVHSKIHLQPP*RRGLILVGVVPVLHGSQGQISPPYLNGQESQPS 335 P HVH +L PP + +++VG P GS ++ L G+ PS Sbjct: 68 PEHVHRWSYLCPPEQVRVVIVGQDPYCDGSASGLAFGTLAGRPPPPS 114
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -2 Query: 486 VSEEQINELDEVFRKAAKADTPTEVPD 406 + E+Q+NE+D ++RKA + DT + D Sbjct: 400 LDEKQMNEIDSIYRKAQQGDTRLDEMD 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,299,645 Number of Sequences: 219361 Number of extensions: 1814406 Number of successful extensions: 4895 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 4763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4893 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
