ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26g15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187605.1| Oryza sativa (japonica cultivar-group), predic... 107 4e-20
2dbj|AK073981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 6e-19
4gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 103 6e-19
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
6gb|AC093902.3| Homo sapiens BAC clone RP11-732B24 from 4, comple... 46 0.13
7gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, comp... 44 0.51
8gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, comple... 44 0.51
9emb|CR926133.7| Zebrafish DNA sequence from clone DKEY-165C17 in... 42 2.0
10dbj|AP003352.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.0
11gb|AC119878.7| Mus musculus chromosome 3, clone RP24-329A3, comp... 40 8.0
12gb|AC164619.5| Mus musculus BAC clone RP23-82L19 from chromosome... 40 8.0
13gb|AC147913.2| Xenopus tropicalis clone CH216-83K3, complete seq... 40 8.0
14gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complet... 40 8.0
15gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, com... 40 8.0
16emb|AL139383.14| Human DNA sequence from clone RP11-87G1 on chro... 40 8.0
17gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswel... 40 8.0
18gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 8.0
19gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromoso... 40 8.0
20gb|AC110375.4| Mus musculus BAC clone RP23-409L20 from 18, compl... 40 8.0 
>ref|NM_187605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3744

 Score =  107 bits (54), Expect = 4e-20
 Identities = 112/130 (86%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 420  ctcctgatatttttgcttctataatttgctttgcaaggtcatacagggatccaagaagtt 479
            ||||||||||||| || |||| |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 2667 ctcctgatatttt-gcatctacaatttgttttgcgaggtcatagagggacccaagaagtt 2609

                                                                        
Query: 480  catctctccgttcacagtattcttgggctagcacaccatggtcctacccacgttcaaatt 539
            ||||||| |  |||||||||||||||  |||||||||||| || | |||||| || ||||
Sbjct: 2608 catctcttctgtcacagtattcttggattagcacaccatgctcatccccacgctcgaatt 2549

                      
Query: 540  tggcagttaa 549
            | ||||||||
Sbjct: 2548 tagcagttaa 2539



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtattcttgggctagcacaccatggtcctgcccatgttcaaatttggcagttaatagacc 301
            ||||||||||  |||||||||||| || | |||| | || ||||| |||||||| |  ||
Sbjct: 2592 gtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaacaaccc 2533

                                                                        
Query: 302  aatatatccctccagtagcatatctgtgagtccttccagctgagaccatagattagattt 361
            ||||||| | |||||||| ||||||||||||| ||||| |||||||||||| || || ||
Sbjct: 2532 aatatatgcatccagtaggatatctgtgagtcgttccaactgagaccataggtttgactt 2473

                                                      
Query: 362  cattggcatgcttgcatatcctgattctctcaaaagctccat 403
            ||||| ||||   |||   |||| ||||||||||||||||||
Sbjct: 2472 cattgacatgtccgcagcccctggttctctcaaaagctccat 2431
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>dbj|AK073981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C04, full
            insert sequence
          Length = 4184

 Score =  107 bits (54), Expect = 4e-20
 Identities = 112/130 (86%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 420  ctcctgatatttttgcttctataatttgctttgcaaggtcatacagggatccaagaagtt 479
            ||||||||||||| || |||| |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 2899 ctcctgatatttt-gcatctacaatttgttttgcgaggtcatagagggacccaagaagtt 2841

                                                                        
Query: 480  catctctccgttcacagtattcttgggctagcacaccatggtcctacccacgttcaaatt 539
            ||||||| |  |||||||||||||||  |||||||||||| || | |||||| || ||||
Sbjct: 2840 catctcttctgtcacagtattcttggattagcacaccatgctcatccccacgctcgaatt 2781

                      
Query: 540  tggcagttaa 549
            | ||||||||
Sbjct: 2780 tagcagttaa 2771



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtattcttgggctagcacaccatggtcctgcccatgttcaaatttggcagttaatagacc 301
            ||||||||||  |||||||||||| || | |||| | || ||||| |||||||| |  ||
Sbjct: 2824 gtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaacaaccc 2765

                                                                        
Query: 302  aatatatccctccagtagcatatctgtgagtccttccagctgagaccatagattagattt 361
            ||||||| | |||||||| ||||||||||||| ||||| |||||||||||| || || ||
Sbjct: 2764 aatatatgcatccagtaggatatctgtgagtcgttccaactgagaccataggtttgactt 2705

                                                      
Query: 362  cattggcatgcttgcatatcctgattctctcaaaagctccat 403
            ||||| ||||   |||   |||| ||||||||||||||||||
Sbjct: 2704 cattgacatgtccgcagcccctggttctctcaaaagctccat 2663
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 6e-19
 Identities = 103/120 (85%)
 Strand = Plus / Minus

                                                                           
Query: 430     ttttgcttctataatttgctttgcaaggtcatacagggatccaagaagttcatctctccg 489
               |||||| |||| |||||| ||||| |||||||| ||||| ||||||||||||||||| | 
Sbjct: 6545296 ttttgcatctacaatttgttttgcgaggtcatagagggacccaagaagttcatctcttct 6545237

                                                                           
Query: 490     ttcacagtattcttgggctagcacaccatggtcctacccacgttcaaatttggcagttaa 549
                |||||||||||||||  |||||||||||| || | |||||| || ||||| ||||||||
Sbjct: 6545236 gtcacagtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaa 6545177



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                           
Query: 242     gtattcttgggctagcacaccatggtcctgcccatgttcaaatttggcagttaatagacc 301
               ||||||||||  |||||||||||| || | |||| | || ||||| |||||||| |  ||
Sbjct: 6545230 gtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaacaaccc 6545171

                                                                           
Query: 302     aatatatccctccagtagcatatctgtgagtccttccagctgagaccatagattagattt 361
               ||||||| | |||||||| ||||||||||||| ||||| |||||||||||| || || ||
Sbjct: 6545170 aatatatgcatccagtaggatatctgtgagtcgttccaactgagaccataggtttgactt 6545111

                                                         
Query: 362     cattggcatgcttgcatatcctgattctctcaaaagctccat 403
               ||||| ||||   |||   |||| ||||||||||||||||||
Sbjct: 6545110 cattgacatgtccgcagcccctggttctctcaaaagctccat 6545069
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score =  103 bits (52), Expect = 6e-19
 Identities = 103/120 (85%)
 Strand = Plus / Minus

                                                                         
Query: 430   ttttgcttctataatttgctttgcaaggtcatacagggatccaagaagttcatctctccg 489
             |||||| |||| |||||| ||||| |||||||| ||||| ||||||||||||||||| | 
Sbjct: 88058 ttttgcatctacaatttgttttgcgaggtcatagagggacccaagaagttcatctcttct 87999

                                                                         
Query: 490   ttcacagtattcttgggctagcacaccatggtcctacccacgttcaaatttggcagttaa 549
              |||||||||||||||  |||||||||||| || | |||||| || ||||| ||||||||
Sbjct: 87998 gtcacagtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaa 87939



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                         
Query: 242   gtattcttgggctagcacaccatggtcctgcccatgttcaaatttggcagttaatagacc 301
             ||||||||||  |||||||||||| || | |||| | || ||||| |||||||| |  ||
Sbjct: 87992 gtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaacaaccc 87933

                                                                         
Query: 302   aatatatccctccagtagcatatctgtgagtccttccagctgagaccatagattagattt 361
             ||||||| | |||||||| ||||||||||||| ||||| |||||||||||| || || ||
Sbjct: 87932 aatatatgcatccagtaggatatctgtgagtcgttccaactgagaccataggtttgactt 87873

                                                       
Query: 362   cattggcatgcttgcatatcctgattctctcaaaagctccat 403
             ||||| ||||   |||   |||| ||||||||||||||||||
Sbjct: 87872 cattgacatgtccgcagcccctggttctctcaaaagctccat 87831
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 6e-19
 Identities = 103/120 (85%)
 Strand = Plus / Minus

                                                                           
Query: 430     ttttgcttctataatttgctttgcaaggtcatacagggatccaagaagttcatctctccg 489
               |||||| |||| |||||| ||||| |||||||| ||||| ||||||||||||||||| | 
Sbjct: 6544509 ttttgcatctacaatttgttttgcgaggtcatagagggacccaagaagttcatctcttct 6544450

                                                                           
Query: 490     ttcacagtattcttgggctagcacaccatggtcctacccacgttcaaatttggcagttaa 549
                |||||||||||||||  |||||||||||| || | |||||| || ||||| ||||||||
Sbjct: 6544449 gtcacagtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaa 6544390



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                           
Query: 242     gtattcttgggctagcacaccatggtcctgcccatgttcaaatttggcagttaatagacc 301
               ||||||||||  |||||||||||| || | |||| | || ||||| |||||||| |  ||
Sbjct: 6544443 gtattcttggattagcacaccatgctcatccccacgctcgaatttagcagttaacaaccc 6544384

                                                                           
Query: 302     aatatatccctccagtagcatatctgtgagtccttccagctgagaccatagattagattt 361
               ||||||| | |||||||| ||||||||||||| ||||| |||||||||||| || || ||
Sbjct: 6544383 aatatatgcatccagtaggatatctgtgagtcgttccaactgagaccataggtttgactt 6544324

                                                         
Query: 362     cattggcatgcttgcatatcctgattctctcaaaagctccat 403
               ||||| ||||   |||   |||| ||||||||||||||||||
Sbjct: 6544323 cattgacatgtccgcagcccctggttctctcaaaagctccat 6544282
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>gb|AC093902.3| Homo sapiens BAC clone RP11-732B24 from 4, complete sequence
          Length = 179591

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 424   tgatatttttgcttctataattt 446
             |||||||||||||||||||||||
Sbjct: 32933 tgatatttttgcttctataattt 32955
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>gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, complete sequence
          Length = 149710

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 437   tctataatttgctttgcaaggtcata 462
             ||||||||||||||||| ||||||||
Sbjct: 68585 tctataatttgctttgctaggtcata 68610
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>gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, complete sequence
          Length = 173066

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 437   tctataatttgctttgcaaggtcata 462
             ||||||||||||||||| ||||||||
Sbjct: 78487 tctataatttgctttgctaggtcata 78512
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>emb|CR926133.7| Zebrafish DNA sequence from clone DKEY-165C17 in linkage group 20,
             complete sequence
          Length = 38511

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 269   ctgcccatgttcaaatttggcagtt 293
             ||||||||||| |||||||||||||
Sbjct: 23303 ctgcccatgttaaaatttggcagtt 23327
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>dbj|AP003352.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1208A12
          Length = 187349

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 426    atatttttgcttctataattt 446
              |||||||||||||||||||||
Sbjct: 171273 atatttttgcttctataattt 171293
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>gb|AC119878.7| Mus musculus chromosome 3, clone RP24-329A3, complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tagtacctgccttcatcaag 226
             ||||||||||||||||||||
Sbjct: 84376 tagtacctgccttcatcaag 84395
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>gb|AC164619.5| Mus musculus BAC clone RP23-82L19 from chromosome 18, complete sequence
          Length = 216368

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 426   atatttttgcttctataatttgct 449
             ||||||||||| ||||||||||||
Sbjct: 58708 atatttttgctactataatttgct 58685
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>gb|AC147913.2| Xenopus tropicalis clone CH216-83K3, complete sequence
          Length = 176651

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   atttgctttgcaaggtcata 462
             ||||||||||||||||||||
Sbjct: 41647 atttgctttgcaaggtcata 41666
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>gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complete sequence
          Length = 195393

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   agatttcattggcatgcttg 375
             ||||||||||||||||||||
Sbjct: 61983 agatttcattggcatgcttg 62002
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>gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, complete sequence
          Length = 270111

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 426    atatttttgcttctataatttgct 449
              ||||||||||| ||||||||||||
Sbjct: 247658 atatttttgctactataatttgct 247635
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>emb|AL139383.14| Human DNA sequence from clone RP11-87G1 on chromosome 13q12.2-13.2
             Contains part of a novel gene and a CpG island, complete
             sequence
          Length = 182917

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 424   tgatatttttgcttctataatttg 447
             ||||||||||||||||| ||||||
Sbjct: 10729 tgatatttttgcttctagaatttg 10706
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>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171523

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   tcatcaagccagctttacaa 238
             ||||||||||||||||||||
Sbjct: 52917 tcatcaagccagctttacaa 52936
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     gactccaagtcctatttagattcc 77
              ||||||||||| ||||||||||||
Sbjct: 238115 gactccaagtcttatttagattcc 238138
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>gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromosome unknown, complete
              sequence
          Length = 228855

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    tgcttctataatttgctttg 452
              ||||||||||||||||||||
Sbjct: 212271 tgcttctataatttgctttg 212290
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>gb|AC110375.4| Mus musculus BAC clone RP23-409L20 from 18, complete sequence
          Length = 191505

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 426    atatttttgcttctataatttgct 449
              ||||||||||| ||||||||||||
Sbjct: 117195 atatttttgctactataatttgct 117172


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,487,789
Number of Sequences: 3902068
Number of extensions: 4487789
Number of successful extensions: 79394
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79305
Number of HSP's gapped (non-prelim): 84
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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