>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1)
          Length = 1970

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 CPFHFAHVLLKKSKFHVRWRLET 240
           CP HF H+ L K  FHV + ++T
Sbjct: 81  CPGHFGHIELAKPVFHVGFLVKT 103

>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1)
          Length = 1970

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 CPFHFAHVLLKKSKFHVRWRLET 240
           CP HF H+ L K  FHV + ++T
Sbjct: 81  CPGHFGHIELAKPVFHVGFLVKT 103

>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2514

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -3

Query: 277 TMCIHKKLKCRTRSPISIEHEIWIFSAGHVQNGKDTILLLE*IIFKNNTL*YVCHYETY* 98
           ++C H  + C TR+  S+  +++I + G + +             K     Y   ++T  
Sbjct: 134 SLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQ----------AMKGVRTLYWIGFDTTQ 183

Query: 97  FVFLLVTAKYSAY 59
           F+F  +   Y AY
Sbjct: 184 FMFSAMAGSYPAY 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,767,561
Number of Sequences: 219361
Number of extensions: 759856
Number of successful extensions: 1490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)