ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26g13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC156558.1| Mus musculus BAC clone RP24-531M24 from 12, complete sequence Length = 161831 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Plus Query: 92 tacaaattaataggtttcataatgacat 119 ||||||||||||||||||||| |||||| Sbjct: 62813 tacaaattaataggtttcatactgacat 62840
>gb|AC160130.2| Mus musculus BAC clone RP23-254K13 from chromosome 12, complete sequence Length = 177970 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Plus Query: 92 tacaaattaataggtttcataatgacat 119 ||||||||||||||||||||| |||||| Sbjct: 176982 tacaaattaataggtttcatactgacat 177009
>ref|XM_634816.1| Dictyostelium discoideum hypothetical protein (DDB0218648), partial mRNA Length = 1263 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 gtattatttttaaaaataattc 153 |||||||||||||||||||||| Sbjct: 589 gtattatttttaaaaataattc 610
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 catatcatagcgtattattttt 142 |||||||||||||||||||||| Sbjct: 367269 catatcatagcgtattattttt 367290
>dbj|AP000623.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-71P3, complete sequence Length = 121627 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 85 ggagaaatacaaattaataggt 106 |||||||||||||||||||||| Sbjct: 25107 ggagaaatacaaattaataggt 25086
>gb|AC167117.5| Mus musculus chromosome 1, clone RP24-73D23, complete sequence Length = 166651 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 |||||||||||| |||||||| ||||||| Sbjct: 57229 atacaaattaattggtttcattatgacat 57257
>gb|AC101852.7| Mus musculus chromosome 1, clone RP23-279P3, complete sequence Length = 185975 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||||||| ||||||||| ||||||| Sbjct: 26807 atacaaattaaaaggtttcattatgacat 26779
>gb|AC116695.12| Mus musculus chromosome 1, clone RP24-407C10, complete sequence Length = 199978 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 |||||||||||| |||||||| ||||||| Sbjct: 165303 atacaaattaattggtttcattatgacat 165331
>gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, complete sequence Length = 217249 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 tattatttttaaaaataattcattc 157 ||||||||||||||| ||||||||| Sbjct: 102575 tattatttttaaaaacaattcattc 102599
>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete sequence Length = 177469 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 attatttttaaaaataattca 154 ||||||||||||||||||||| Sbjct: 19218 attatttttaaaaataattca 19238 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 attatttttaaaaataattc 153 |||||||||||||||||||| Sbjct: 19235 attatttttaaaaataattc 19216
>gb|AC112269.3| Mus musculus BAC clone RP24-115O19 from 2, complete sequence Length = 172714 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 128635 atacaaagtaataggtttcattatgacat 128663
>emb|CR848728.7| Zebrafish DNA sequence from clone CH211-251H16 in linkage group 2, complete sequence Length = 169884 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 tatttttaaaaataattcatt 156 ||||||||||||||||||||| Sbjct: 44364 tatttttaaaaataattcatt 44344
>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains part of a novel gene (KIAA0916)amd two novel genes, complete sequence Length = 97477 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ttatttttaaaaataattcat 155 ||||||||||||||||||||| Sbjct: 84083 ttatttttaaaaataattcat 84103
>gb|AC158962.4| Mus musculus chromosome 1, clone RP23-443N21, complete sequence Length = 180337 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||||||| ||||||||| ||||||| Sbjct: 132986 atacaaattaaaaggtttcattatgacat 133014
>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence Length = 209458 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 19544 atacaaagtaataggtttcattatgacat 19572
>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete sequence Length = 226730 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gtattatttttaaaaataatt 152 ||||||||||||||||||||| Sbjct: 83634 gtattatttttaaaaataatt 83654
>gb|AC157667.11| Mus musculus 6 BAC RP24-86B22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206878 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 106907 atacaaaataataggtttcattatgacat 106935
>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence Length = 165536 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 gtattatttttaaaaataatt 152 ||||||||||||||||||||| Sbjct: 50335 gtattatttttaaaaataatt 50315
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gagaaatacaaattaataggt 106 ||||||||||||||||||||| Sbjct: 1501074 gagaaatacaaattaataggt 1501054
>gb|AY137757.1| Mus musculus vacuolar proton translocating ATPase 100 kDa a4 subunit (a4) gene, partial cds; alternatively spliced Length = 32199 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 12247 atacaaaataataggtttcattatgacat 12275
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 98412 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 aatatagtgtcctttccattt 185 ||||||||||||||||||||| Sbjct: 15017 aatatagtgtcctttccattt 15037
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gagaaatacaaattaataggt 106 ||||||||||||||||||||| Sbjct: 28562 gagaaatacaaattaataggt 28542
>dbj|AP004166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1499_A07 Length = 132146 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gagaaatacaaattaataggt 106 ||||||||||||||||||||| Sbjct: 110979 gagaaatacaaattaataggt 110959
>gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1, complete sequence Length = 79554 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 attatttttaaaaataattca 154 ||||||||||||||||||||| Sbjct: 24667 attatttttaaaaataattca 24647
>gb|AC122222.6| Mus musculus BAC clone RP23-128D11 from 7, complete sequence Length = 212225 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcat 111 ||||||||||||||||||||| Sbjct: 108077 atacaaattaataggtttcat 108057
>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence Length = 205086 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 172390 atacaaaataataggtttcattatgacat 172362
>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete sequence Length = 178965 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 gtattatttttaaaaataatt 152 ||||||||||||||||||||| Sbjct: 8327 gtattatttttaaaaataatt 8307
>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence Length = 220538 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 attatttttaaaaataattca 154 ||||||||||||||||||||| Sbjct: 189993 attatttttaaaaataattca 190013 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 attatttttaaaaataattc 153 |||||||||||||||||||| Sbjct: 190010 attatttttaaaaataattc 189991
>gb|AC132240.3| Mus musculus BAC clone RP24-411A22 from 3, complete sequence Length = 182978 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 3840 atacaaagtaataggtttcattatgacat 3812
>emb|BX004998.7| Mouse DNA sequence from clone RP23-402C17 on chromosome 4, complete sequence Length = 179875 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 40165 atacaaaataataggtttcatcatgacat 40137
>gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, complete sequence Length = 201383 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 |||||||||||| |||||||| ||||||| Sbjct: 200819 atacaaattaattggtttcattatgacat 200791
>emb|AL845350.6| Mouse DNA sequence from clone RP23-322M5 on chromosome 2, complete sequence Length = 90631 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 atacaaattaataggtttcataatgacat 119 ||||||| ||||||||||||| ||||||| Sbjct: 25405 atacaaagtaataggtttcattatgacat 25377
>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence Length = 204554 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 37260 tattatttttaaaaataatt 37241
>gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, complete sequence Length = 188758 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ttttaaaaataattcattct 158 |||||||||||||||||||| Sbjct: 172565 ttttaaaaataattcattct 172546
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gtattatttttaaaaataat 151 |||||||||||||||||||| Sbjct: 11560 gtattatttttaaaaataat 11579
>gb|DQ112036.1| Perna viridis clone PV106 microsatellite sequences Length = 480 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tatttttaaaaataattcat 155 |||||||||||||||||||| Sbjct: 167 tatttttaaaaataattcat 186
>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete sequence Length = 238278 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 216152 tattatttttaaaaataatt 216133
>gb|AC112968.11| Mus musculus chromosome 1, clone RP24-273P12, complete sequence Length = 181519 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 117051 tattatttttaaaaataatt 117070
>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence Length = 94633 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 tattatttttaaaaataattcatt 156 |||| ||||||||||||||||||| Sbjct: 78285 tattttttttaaaaataattcatt 78308
>emb|CR382335.12| Zebrafish DNA sequence from clone DKEY-56I16 in linkage group 14, complete sequence Length = 159057 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 30358 tattatttttaaaaataatt 30339
>gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, complete sequence Length = 186441 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 95488 atttttaaaaataattcatt 95469
>gb|AC125208.2| Mus musculus BAC clone RP23-183I4 from 6, complete sequence Length = 218080 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 137447 atttttaaaaataattcatt 137466
>ref|XM_648407.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (81.t00026) partial mRNA Length = 1209 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 55 atttttaaaaataattcatt 74
>gb|AC004160.1| Homo sapiens BAC clone GS1-164B5 from 7, complete sequence Length = 143751 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ttatttttaaaaataattca 154 |||||||||||||||||||| Sbjct: 50037 ttatttttaaaaataattca 50056
>ref|XM_725981.1| Plasmodium yoelii yoelii str. 17XNL vacuolar membrane protein Pep3 (PY03107) partial mRNA Length = 4200 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 3585 tattatttttaaaaataatt 3566
>ref|XM_671939.1| Plasmodium berghei strain ANKA hypothetical protein (PB000939.03.0) partial mRNA Length = 2841 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 2226 tattatttttaaaaataatt 2207
>gb|AY198133.1| Spiroplasma kunkelii strain CR2-3x partial genome sequence Length = 84712 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 41309 tattatttttaaaaataatt 41290
>emb|AL137127.7| Human DNA sequence from clone RP5-1126H10 on chromosome 1p34.3-35.3 Contains the 3' end of the gene for retinoblastoma-associated factor 600 (RBAF600), complete sequence Length = 98832 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 73753 atttttaaaaataattcatt 73772
>emb|AL022726.1|HS625H18 Human DNA sequence from clone RP4-625H18 on chromosome 6p22.2-23 Contains the ID4 gene for dominant negative helix-loop-helix inhibitor of DNA binding 4 protein, a novel gene, the 5' end of two novel genes and four CpG islands, complete sequence Length = 185371 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 193 gtcctgctgaaaaaatccaaatttcatg 220 ||||||| ||| |||||||||||||||| Sbjct: 150912 gtcctgccgaagaaatccaaatttcatg 150885
>emb|AL929354.1|PFA929354 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4 Length = 340552 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 307436 tattatttttaaaaataatt 307455
>emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chromosome 11 Contains a zinc finger protein pseudogene, complete sequence Length = 190351 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 atacaaattaataggtttcataatgaca 118 ||||||| ||||||||||||| |||||| Sbjct: 153837 atacaaaataataggtttcattatgaca 153864
>emb|CR407548.6| Zebrafish DNA sequence from clone DKEY-166N22 in linkage group 25, complete sequence Length = 136155 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 atacaaattaataggtttca 110 |||||||||||||||||||| Sbjct: 74786 atacaaattaataggtttca 74805
>dbj|AB100500.1| Selenomonas ruminantium regulator gene for degradation of lysine decarboxylase and the flanking region, complete and partial cds Length = 8524 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atgtcctgctgaaaaaatcc 210 |||||||||||||||||||| Sbjct: 5511 atgtcctgctgaaaaaatcc 5530
>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence Length = 194619 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttatttttaaaaataattca 154 |||||||||||||||||||| Sbjct: 189221 ttatttttaaaaataattca 189202
>gb|AC126778.9| Medicago truncatula clone mth2-32j21, complete sequence Length = 110448 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 ttatttttaaaaataattcattct 158 |||||||||||||||||| ||||| Sbjct: 7704 ttatttttaaaaataatttattct 7727
>gb|AC023755.14| Homo sapiens chromosome 12, clone RP11-44P17, complete sequence Length = 135689 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tatttttaaaaataattcat 155 |||||||||||||||||||| Sbjct: 109304 tatttttaaaaataattcat 109323
>gb|AC006135.3| Arabidopsis thaliana chromosome 2 clone F24H14 map CIC06E08, complete sequence Length = 82356 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 18282 tattatttttaaaaataatt 18263
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tttttaaaaataattcattc 157 |||||||||||||||||||| Sbjct: 101633 tttttaaaaataattcattc 101614
>gb|AC011257.9| Homo sapiens chromosome , clone RP11-26E5, complete sequence Length = 184194 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tatttttaaaaataattcat 155 |||||||||||||||||||| Sbjct: 163732 tatttttaaaaataattcat 163751
>dbj|AK156521.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830028E14 product:unclassifiable, full insert sequence Length = 1547 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 1388 atttttaaaaataattcatt 1407
>gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosome 16, complete sequence Length = 143881 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 aaaaatccaaatttcatgtt 222 |||||||||||||||||||| Sbjct: 74167 aaaaatccaaatttcatgtt 74186
>emb|BX470131.7| Zebrafish DNA sequence from clone CH211-175M2 in linkage group 10, complete sequence Length = 143803 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttatttttaaaaataattca 154 |||||||||||||||||||| Sbjct: 27675 ttatttttaaaaataattca 27656
>gb|AC010261.5| Homo sapiens chromosome 5 clone CTC-459M5, complete sequence Length = 146017 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 94848 tattatttttaaaaataatt 94867
>emb|AL732370.10| Mouse DNA sequence from clone RP23-413I21 on chromosome X, complete sequence Length = 199391 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 181296 atttttaaaaataattcatt 181277
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 13366340 tattatttttaaaaataatt 13366359
>gb|AF250390.1|AF250390 Carsonella ruddii elongation factor Tu (tufA) gene, partial cds; ribosomal protein S10 (rps10), ribosomal protein L3 (rpl3), ribosomal protein L4 (rpl4), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), and ribosomal protein L22 (rpl22) genes, complete cds; and ribosomal protein S3 (rps3) gene, partial cds Length = 3856 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 2580 tattatttttaaaaataatt 2561
>gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complete sequence Length = 145673 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tttttaaaaataattcattc 157 |||||||||||||||||||| Sbjct: 35924 tttttaaaaataattcattc 35943
>gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BAC Library C) complete sequence Length = 180194 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 ttatttttaaaaataattcattct 158 |||||||||||||||||| ||||| Sbjct: 56143 ttatttttaaaaataatttattct 56120
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 36942 tattatttttaaaaataatt 36961
>gb|AC115606.2| Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence Length = 49306 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 attatttttaaaaataattc 153 |||||||||||||||||||| Sbjct: 1044 attatttttaaaaataattc 1063
>gb|AC026714.5|AC026714 Homo sapiens chromosome 5 clone CTD-2132P24, complete sequence Length = 89153 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttatttttaaaaataattca 154 |||||||||||||||||||| Sbjct: 31071 ttatttttaaaaataattca 31052
>gb|AC084524.1|CBRG20K13 Caenorhabditis briggsae cosmid G20K13, complete sequence Length = 35804 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ctgctgaaaaaatccaaatt 215 |||||||||||||||||||| Sbjct: 16324 ctgctgaaaaaatccaaatt 16305
>gb|AC091983.3| Homo sapiens chromosome 5 clone RP11-559F22, complete sequence Length = 110999 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aaaaaatccaaatttcatgt 221 |||||||||||||||||||| Sbjct: 80837 aaaaaatccaaatttcatgt 80818
>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence Length = 208487 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 154408 atttttaaaaataattcatt 154427
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 91591 tattatttttaaaaataatt 91610
>dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6 Length = 71736 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttacaaggagaaatacaaat 98 |||||||||||||||||||| Sbjct: 49909 ttacaaggagaaatacaaat 49928
>emb|AL161712.5|CEY66D12A Caenorhabditis elegans YAC Y66D12A, complete sequence Length = 123149 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 13350 tattatttttaaaaataatt 13331
>emb|BX510957.15| Zebrafish DNA sequence from clone DKEY-69C1 in linkage group 20, complete sequence Length = 149635 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 114534 tattatttttaaaaataatt 114515
>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4, complete sequence Length = 158481 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 148939 tattatttttaaaaataatt 148920
>emb|AL645786.5| Zebrafish DNA sequence from clone XX-B51 in linkage group 8 Contains eleven PIGR (polymeric immunoglobulin receptor) pseudogenes and three CpG islands, complete sequence Length = 88500 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tattatttttaaaaataatt 152 |||||||||||||||||||| Sbjct: 39847 tattatttttaaaaataatt 39866
>emb|CR354425.7| Zebrafish DNA sequence from clone CH211-93N11 in linkage group 25, complete sequence Length = 161571 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 atacaaattaataggtttca 110 |||||||||||||||||||| Sbjct: 85552 atacaaattaataggtttca 85571
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tttttaaaaataattcattc 157 |||||||||||||||||||| Sbjct: 1883562 tttttaaaaataattcattc 1883543
>gb|AC117771.17| Mus musculus chromosome 1, clone RP24-512A5, complete sequence Length = 161292 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ttttaaaaataattcattct 158 |||||||||||||||||||| Sbjct: 25282 ttttaaaaataattcattct 25301
>dbj|AB092729.1| Carabus reitterianus reitterianus ND5 gene for NADH dehydrogenase subunit 5, pratial cds, isolate:U3-1 Length = 1084 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atttttaaaaataattcatt 156 |||||||||||||||||||| Sbjct: 956 atttttaaaaataattcatt 975
>emb|AL929057.9| Zebrafish DNA sequence from clone CH211-147G21, complete sequence Length = 158344 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gtattatttttaaaaataat 151 |||||||||||||||||||| Sbjct: 108911 gtattatttttaaaaataat 108892
>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete sequence Length = 187308 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 ttatttttaaaaataattcattct 158 |||||||||||||||||| ||||| Sbjct: 132359 ttatttttaaaaataatttattct 132336
>emb|AL611970.11| Mouse DNA sequence from clone RP23-413K17 on chromosome 4, complete sequence Length = 61588 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tttttaaaaataattcattc 157 |||||||||||||||||||| Sbjct: 15962 tttttaaaaataattcattc 15981 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,669,017 Number of Sequences: 3902068 Number of extensions: 4669017 Number of successful extensions: 147987 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147534 Number of HSP's gapped (non-prelim): 453 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
