ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190800.1| Oryza sativa (japonica cultivar-group), predic... 385 e-103
2dbj|AK059062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
3dbj|AK067545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 3e-95
4gb|AY108573.1| Zea mays PCO075539 mRNA sequence 232 1e-57
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
6dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
7dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
8gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome... 46 0.15
9gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosom... 46 0.15
10gb|AC103719.12| Homo sapiens chromosome 8, clone RP11-421P23, co... 46 0.15
11emb|AJ628016.1| Pinus pinaster mRNA for aspartate aminotransfera... 46 0.15
12gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosom... 44 0.60
13gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 m... 44 0.60
14emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chro... 44 0.60
15gb|AE008403.1| Streptococcus pneumoniae R6 section 19 of 184 of ... 42 2.4
16dbj|AK136841.1| Mus musculus adult male diencephalon cDNA, RIKEN... 42 2.4
17gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 42 2.4
18gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A1... 42 2.4
19emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chrom... 42 2.4
20gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, co... 40 9.3
21gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 9.3
22gb|BC084090.1| Xenopus laevis furin, mRNA (cDNA clone MGC:82710 ... 40 9.3
23gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
24gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
25gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, comp... 40 9.3
26gb|AC119947.14| Mus musculus chromosome 19, clone RP24-446G1, co... 40 9.3
27gb|BC013463.1| Mus musculus homeo box D10, mRNA (cDNA clone MGC:... 40 9.3
28ref|NM_013554.2| Mus musculus homeo box D10 (Hoxd10), mRNA 40 9.3
29emb|CT005236.2| Pan troglodytes chromosome X clone RP43-010E09 m... 40 9.3
30gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosom... 40 9.3
31gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, compl... 40 9.3
32gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl... 40 9.3
33emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5 40 9.3
34emb|AL589202.1| Human DNA sequence from clone RP11-391F23 on chr... 40 9.3
35emb|AL606449.4|OSJN00004 Oryza sativa genomic DNA, chromosome 4,... 40 9.3
36emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 40 9.3
37gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence 40 9.3
38gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome... 40 9.3
39gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome... 40 9.3
40gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosom... 40 9.3
41dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
43dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
44gb|AC117406.2| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC ... 40 9.3
45gb|AC084631.1|CBRG45E19 Caenorhabditis briggsae cosmid G45E19, c... 40 9.3
46gb|AC130454.2| Homo sapiens chromosome 16 clone CTA-345G4, compl... 40 9.3
47gb|AC078941.6| Homo sapiens BAC clone RP11-180B10 from 2, comple... 40 9.3
48dbj|AP005916.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
49emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 i... 40 9.3
50emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 9.3
51emb|CR318669.18| Zebrafish DNA sequence from clone CH211-51B3 in... 40 9.3
52emb|AL928644.12| Mouse DNA sequence from clone RP23-313J15 on ch... 40 9.3
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
54dbj|AP006419.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 9.3
55dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 9.3 
>ref|NM_190800.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1611

 Score =  385 bits (194), Expect = e-103
 Identities = 313/353 (88%)
 Strand = Plus / Minus

                                                                        
Query: 330  ccaaatgcatccccagggacaagcgcaacctgtgctttctctagcaggaacatgcagagg 389
            ||||||||||| || |||||||| ||||||||||||||||| |  |||||||||||||||
Sbjct: 1496 ccaaatgcatcgcccgggacaagtgcaacctgtgctttctccaagaggaacatgcagagg 1437

                                                                        
Query: 390  gtctcagagtccttgatagtgccaaaaccctctacctcggatccatagtaggagctgaag 449
            | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1436 gactcagagtccttgatagtgccaaaaccctctacttcagatccatagtaggagctgaag 1377

                                                                        
Query: 450  tcgatgaacaaataaaaggcaccctgaggttctgatattttgactcctggcagttccctg 509
            ||||||||||||||||||||||||||||| |||||||| || || |||||||||||| ||
Sbjct: 1376 tcgatgaacaaataaaaggcaccctgaggctctgatatcttcacacctggcagttccttg 1317

                                                                        
Query: 510  aaacttcttacaaggtagtcccggcgctcctggaatgctttgaccatggtcgaaactgct 569
            |||||| |||||||||| || || || |||||||||||||||||||| || || ||||||
Sbjct: 1316 aaactttttacaaggtaatcacgacgttcctggaatgctttgaccatagttgagactgct 1257

                                                                        
Query: 570  tcaccgccggcataacctaggttcaaggctgcaagccctgccttctgcgatatactactg 629
            ||||| || || || || |||||||| || || |||||||||||||| ||||| ||||| 
Sbjct: 1256 tcaccaccagcgtagccaaggttcaaagcagcgagccctgccttctgtgatatgctacta 1197

                                                                 
Query: 630  gcaccagatgtgtactggctttggatctttccacangctgagacaaaatgttt 682
            ||||| || ||  |||||||||||||||||||||| ||||  |||||||||||
Sbjct: 1196 gcacctgaagtaaactggctttggatctttccacaggctgcaacaaaatgttt 1144
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>dbj|AK059062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G03, full
            insert sequence
          Length = 1638

 Score =  385 bits (194), Expect = e-103
 Identities = 313/353 (88%)
 Strand = Plus / Minus

                                                                        
Query: 330  ccaaatgcatccccagggacaagcgcaacctgtgctttctctagcaggaacatgcagagg 389
            ||||||||||| || |||||||| ||||||||||||||||| |  |||||||||||||||
Sbjct: 1329 ccaaatgcatcgcccgggacaagtgcaacctgtgctttctccaagaggaacatgcagagg 1270

                                                                        
Query: 390  gtctcagagtccttgatagtgccaaaaccctctacctcggatccatagtaggagctgaag 449
            | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1269 gactcagagtccttgatagtgccaaaaccctctacttcagatccatagtaggagctgaag 1210

                                                                        
Query: 450  tcgatgaacaaataaaaggcaccctgaggttctgatattttgactcctggcagttccctg 509
            ||||||||||||||||||||||||||||| |||||||| || || |||||||||||| ||
Sbjct: 1209 tcgatgaacaaataaaaggcaccctgaggctctgatatcttcacacctggcagttccttg 1150

                                                                        
Query: 510  aaacttcttacaaggtagtcccggcgctcctggaatgctttgaccatggtcgaaactgct 569
            |||||| |||||||||| || || || |||||||||||||||||||| || || ||||||
Sbjct: 1149 aaactttttacaaggtaatcacgacgttcctggaatgctttgaccatagttgagactgct 1090

                                                                        
Query: 570  tcaccgccggcataacctaggttcaaggctgcaagccctgccttctgcgatatactactg 629
            ||||| || || || || |||||||| || || |||||||||||||| ||||| ||||| 
Sbjct: 1089 tcaccaccagcgtagccaaggttcaaagcagcgagccctgccttctgtgatatgctacta 1030

                                                                 
Query: 630  gcaccagatgtgtactggctttggatctttccacangctgagacaaaatgttt 682
            ||||| || ||  |||||||||||||||||||||| ||||  |||||||||||
Sbjct: 1029 gcacctgaagtaaactggctttggatctttccacaggctgcaacaaaatgttt 977
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>dbj|AK067545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111C16, full
            insert sequence
          Length = 1405

 Score =  357 bits (180), Expect = 3e-95
 Identities = 310/353 (87%), Gaps = 3/353 (0%)
 Strand = Plus / Minus

                                                                        
Query: 330  ccaaatgcatccccagggacaagcgcaacctgtgctttctctagcaggaacatgcagagg 389
            ||||||||||| || |||||||| ||||||||||||||||| |  |||||||||||||||
Sbjct: 1088 ccaaatgcatcgcccgggacaagtgcaacctgtgctttctccaagaggaacatgcagagg 1029

                                                                        
Query: 390  gtctcagagtccttgatagtgccaaaaccctctacctcggatccatagtaggagctgaag 449
            | ||||||||||||||||||||||||||||||||| || |||||||||||||||   |||
Sbjct: 1028 gactcagagtccttgatagtgccaaaaccctctacttcagatccatagtaggag---aag 972

                                                                        
Query: 450  tcgatgaacaaataaaaggcaccctgaggttctgatattttgactcctggcagttccctg 509
            ||||||||||||||||||||||||||||| |||||||| || || |||||||||||| ||
Sbjct: 971  tcgatgaacaaataaaaggcaccctgaggctctgatatcttcacacctggcagttccttg 912

                                                                        
Query: 510  aaacttcttacaaggtagtcccggcgctcctggaatgctttgaccatggtcgaaactgct 569
            |||||| |||||||||| || || || |||||||||||||||||||| || || ||||||
Sbjct: 911  aaactttttacaaggtaatcacgacgttcctggaatgctttgaccatagttgagactgct 852

                                                                        
Query: 570  tcaccgccggcataacctaggttcaaggctgcaagccctgccttctgcgatatactactg 629
            ||||| || || || || |||||||| || || |||||||||||||| ||||| ||||| 
Sbjct: 851  tcaccaccagcgtagccaaggttcaaagcagcgagccctgccttctgtgatatgctacta 792

                                                                 
Query: 630  gcaccagatgtgtactggctttggatctttccacangctgagacaaaatgttt 682
            ||||| || ||  |||||||||||||||||||||| ||||  |||||||||||
Sbjct: 791  gcacctgaagtaaactggctttggatctttccacaggctgcaacaaaatgttt 739
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>gb|AY108573.1| Zea mays PCO075539 mRNA sequence
          Length = 567

 Score =  232 bits (117), Expect = 1e-57
 Identities = 228/265 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 caggggccttgagcagagtcattgcgtcttttatcttctccattgcagattgtagtgttg 288
           |||||| | ||||||||| ||| || |||||||||||  ||||||||| ||| ||||| |
Sbjct: 274 cagggggcctgagcagagccatcgcttcttttatctttcccattgcagtttgcagtgtcg 215

                                                                       
Query: 289 atagtgcagcggcatatgagatacgaacacccgtgtcatctccaaatgcatccccaggga 348
           | |  || || |||||||| || ||||||||| ||||||| |||||||||||||||||||
Sbjct: 214 acatagctgcagcatatgaaatgcgaacacccttgtcatcgccaaatgcatccccaggga 155

                                                                       
Query: 349 caagcgcaacctgtgctttctctagcaggaacatgcagagggtctcagagtccttgatag 408
           |||||||||||||||| ||||| | ||||||||  ||||||| ||||||||||||||| |
Sbjct: 154 caagcgcaacctgtgccttctccaacaggaacagacagagggactcagagtccttgatgg 95

                                                                       
Query: 409 tgccaaaaccctctacctcggatccatagtaggagctgaagtcgatgaacaaataaaagg 468
           | |||||||| || ||||| || |||||||| ||||||||||||||||| ||||| ||||
Sbjct: 94  taccaaaaccttccacctcagacccatagtacgagctgaagtcgatgaataaatagaagg 35

                                    
Query: 469 caccctgaggttctgatattttgac 493
           | ||||||||||| ||||| |||||
Sbjct: 34  ctccctgaggttccgatatcttgac 10
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 6e-44
 Identities = 112/118 (94%)
 Strand = Plus / Minus

                                                                            
Query: 357      acctgtgctttctctagcaggaacatgcagagggtctcagagtccttgatagtgccaaaa 416
                |||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 37775659 acctgtgctttctccaagaggaacatgcagagggactcagagtccttgatagtgccaaaa 37775600

                                                                          
Query: 417      ccctctacctcggatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 474
                |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37775599 ccctctacttcagatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 37775542



 Score =  133 bits (67), Expect = 8e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                            
Query: 472      cctgaggttctgatattttgactcctggcagttccctgaaacttcttacaaggtagtccc 531
                ||||||| |||||||| || || |||||||||||| |||||||| |||||||||| || |
Sbjct: 37775463 cctgaggctctgatatcttcacacctggcagttccttgaaactttttacaaggtaatcac 37775404

                                                                            
Query: 532      ggcgctcctggaatgctttgaccatggtcgaaactgcttcaccgccggcataacctaggt 591
                | || |||||||||||||||||||| || || ||||||||||| || || || || ||||
Sbjct: 37775403 gacgttcctggaatgctttgaccatagttgagactgcttcaccaccagcgtagccaaggt 37775344

                                                           
Query: 592      tcaaggctgcaagccctgccttctgcgatatactactggcacc 634
                |||| || || |||||||||||||| ||||| ||||| |||||
Sbjct: 37775343 tcaaagcagcgagccctgccttctgtgatatgctactagcacc 37775301



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 644      ctggctttggatctttccacangctgagacaaaatgttt 682
                ||||||||||||||||||||| ||||  |||||||||||
Sbjct: 37775093 ctggctttggatctttccacaggctgcaacaaaatgttt 37775055
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>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0039A07
          Length = 148892

 Score =  186 bits (94), Expect = 6e-44
 Identities = 112/118 (94%)
 Strand = Plus / Minus

                                                                          
Query: 357    acctgtgctttctctagcaggaacatgcagagggtctcagagtccttgatagtgccaaaa 416
              |||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103960 acctgtgctttctccaagaggaacatgcagagggactcagagtccttgatagtgccaaaa 103901

                                                                        
Query: 417    ccctctacctcggatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 474
              |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103900 ccctctacttcagatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 103843



 Score =  133 bits (67), Expect = 8e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                          
Query: 472    cctgaggttctgatattttgactcctggcagttccctgaaacttcttacaaggtagtccc 531
              ||||||| |||||||| || || |||||||||||| |||||||| |||||||||| || |
Sbjct: 103764 cctgaggctctgatatcttcacacctggcagttccttgaaactttttacaaggtaatcac 103705

                                                                          
Query: 532    ggcgctcctggaatgctttgaccatggtcgaaactgcttcaccgccggcataacctaggt 591
              | || |||||||||||||||||||| || || ||||||||||| || || || || ||||
Sbjct: 103704 gacgttcctggaatgctttgaccatagttgagactgcttcaccaccagcgtagccaaggt 103645

                                                         
Query: 592    tcaaggctgcaagccctgccttctgcgatatactactggcacc 634
              |||| || || |||||||||||||| ||||| ||||| |||||
Sbjct: 103644 tcaaagcagcgagccctgccttctgtgatatgctactagcacc 103602



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 644    ctggctttggatctttccacangctgagacaaaatgttt 682
              ||||||||||||||||||||| ||||  |||||||||||
Sbjct: 103394 ctggctttggatctttccacaggctgcaacaaaatgttt 103356
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>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0008G24
          Length = 152736

 Score =  186 bits (94), Expect = 6e-44
 Identities = 112/118 (94%)
 Strand = Plus / Minus

                                                                         
Query: 357   acctgtgctttctctagcaggaacatgcagagggtctcagagtccttgatagtgccaaaa 416
             |||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 34907 acctgtgctttctccaagaggaacatgcagagggactcagagtccttgatagtgccaaaa 34848

                                                                       
Query: 417   ccctctacctcggatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 474
             |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34847 ccctctacttcagatccatagtaggagctgaagtcgatgaacaaataaaaggcaccct 34790



 Score =  133 bits (67), Expect = 8e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                         
Query: 472   cctgaggttctgatattttgactcctggcagttccctgaaacttcttacaaggtagtccc 531
             ||||||| |||||||| || || |||||||||||| |||||||| |||||||||| || |
Sbjct: 34711 cctgaggctctgatatcttcacacctggcagttccttgaaactttttacaaggtaatcac 34652

                                                                         
Query: 532   ggcgctcctggaatgctttgaccatggtcgaaactgcttcaccgccggcataacctaggt 591
             | || |||||||||||||||||||| || || ||||||||||| || || || || ||||
Sbjct: 34651 gacgttcctggaatgctttgaccatagttgagactgcttcaccaccagcgtagccaaggt 34592

                                                        
Query: 592   tcaaggctgcaagccctgccttctgcgatatactactggcacc 634
             |||| || || |||||||||||||| ||||| ||||| |||||
Sbjct: 34591 tcaaagcagcgagccctgccttctgtgatatgctactagcacc 34549



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 644   ctggctttggatctttccacangctgagacaaaatgttt 682
             ||||||||||||||||||||| ||||  |||||||||||
Sbjct: 34341 ctggctttggatctttccacaggctgcaacaaaatgttt 34303
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>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence
          Length = 184736

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 48     caaatgaaaagattggaacaaaa 70
              |||||||||||||||||||||||
Sbjct: 181904 caaatgaaaagattggaacaaaa 181882
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>gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosome 1, complete sequence
          Length = 133079

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 48     caaatgaaaagattggaacaaaa 70
              |||||||||||||||||||||||
Sbjct: 131227 caaatgaaaagattggaacaaaa 131249
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>gb|AC103719.12| Homo sapiens chromosome 8, clone RP11-421P23, complete sequence
          Length = 167878

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1     acatattattttatttctgactt 23
             |||||||||||||||||||||||
Sbjct: 82330 acatattattttatttctgactt 82308
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>emb|AJ628016.1| Pinus pinaster mRNA for aspartate aminotransferase (aat gene)
          Length = 1996

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 100/126 (79%)
 Strand = Plus / Minus

                                                                        
Query: 544  atgctttgaccatggtcgaaactgcttcaccgccggcataacctaggttcaaggctgcaa 603
            ||||||||||||| || || ||||||||||  || ||||| || | |  ||| || ||||
Sbjct: 1283 atgctttgaccatagtagacactgcttcactaccagcatatcccaaggccaaagcagcaa 1224

                                                                        
Query: 604  gccctgccttctgcgatatactactggcaccagatgtgtactggctttggatctttccac 663
             |||||| ||||| || ||||| || ||||| |||||| ||||||| || ||  ||||||
Sbjct: 1223 cccctgctttctgagagatactgctagcacctgatgtggactggctctgaattcttccac 1164

                  
Query: 664  angctg 669
            | ||||
Sbjct: 1163 aagctg 1158
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>gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosome 19, complete sequence
          Length = 177655

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 594    aaggctgcaagccctgccttct 615
              ||||||||||||||||||||||
Sbjct: 107734 aaggctgcaagccctgccttct 107755
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>gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 map 18, complete
             sequence
          Length = 186929

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 594   aaggctgcaagccctgccttct 615
             ||||||||||||||||||||||
Sbjct: 83330 aaggctgcaagccctgccttct 83351
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>emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chromosome 15, complete
             sequence
          Length = 241432

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 658   ttccacangctgagacaaaatgttt 682
             ||||||| |||||||||||||||||
Sbjct: 42665 ttccacaagctgagacaaaatgttt 42641
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>gb|AE008403.1| Streptococcus pneumoniae R6 section 19 of 184 of the complete genome
          Length = 9976

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   aaatgaaaagattggaacaaa 69
            |||||||||||||||||||||
Sbjct: 8108 aaatgaaaagattggaacaaa 8128
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>dbj|AK136841.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330119G03 product:unclassifiable, full
            insert sequence
          Length = 3124

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 41   attacaccaaatgaaaagattggaacaaa 69
            ||||||||||||||| | |||||||||||
Sbjct: 1270 attacaccaaatgaacaaattggaacaaa 1298
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     aaatgaaaagattggaacaaa 69
              |||||||||||||||||||||
Sbjct: 215990 aaatgaaaagattggaacaaa 216010
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>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
             sequence
          Length = 102078

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    gcaagtttgcaaccaaacaaa 101
             |||||||||||||||||||||
Sbjct: 69328 gcaagtttgcaaccaaacaaa 69348
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>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete
              sequence
          Length = 205757

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 41     attacaccaaatgaaaagattggaacaaa 69
              ||||||||||||||| | |||||||||||
Sbjct: 187565 attacaccaaatgaacaaattggaacaaa 187537
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>gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, complete sequence
          Length = 188130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 643   actggctttggatctttcca 662
             ||||||||||||||||||||
Sbjct: 54412 actggctttggatctttcca 54393
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    gaactaactgttgcacaaca 127
              ||||||||||||||||||||
Sbjct: 570849 gaactaactgttgcacaaca 570868
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>gb|BC084090.1| Xenopus laevis furin, mRNA (cDNA clone MGC:82710 IMAGE:5129847),
            complete cds
          Length = 5724

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gattggaacaaaacaaatcc 77
            ||||||||||||||||||||
Sbjct: 5537 gattggaacaaaacaaatcc 5556
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>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01,
              complete sequence
          Length = 182504

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    ggcataacctaggttcaagg 597
              ||||||||||||||||||||
Sbjct: 169972 ggcataacctaggttcaagg 169991
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>gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018P20 map near S6115, complete sequence
          Length = 139249

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   ggcataacctaggttcaagg 597
             ||||||||||||||||||||
Sbjct: 58610 ggcataacctaggttcaagg 58591
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>gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, complete sequence
          Length = 218847

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 241    gcagagtcattgcgtcttttatcttctccatt 272
              ||||||||| || ||||||| |||||||||||
Sbjct: 114964 gcagagtcagtgtgtcttttctcttctccatt 114933
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>gb|AC119947.14| Mus musculus chromosome 19, clone RP24-446G1, complete sequence
          Length = 142066

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   agtcgatgaacaaataaaag 467
             ||||||||||||||||||||
Sbjct: 69842 agtcgatgaacaaataaaag 69823
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>gb|BC013463.1| Mus musculus homeo box D10, mRNA (cDNA clone MGC:18685
            IMAGE:4240579), complete cds
          Length = 1865

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  acaagcgcaacctgtgcttt 367
            ||||||||||||||||||||
Sbjct: 1740 acaagcgcaacctgtgcttt 1759
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>ref|NM_013554.2| Mus musculus homeo box D10 (Hoxd10), mRNA
          Length = 1865

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  acaagcgcaacctgtgcttt 367
            ||||||||||||||||||||
Sbjct: 1740 acaagcgcaacctgtgcttt 1759
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>emb|CT005236.2| Pan troglodytes chromosome X clone RP43-010E09 map Xq28, complete
             sequence
          Length = 160755

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   aacaatggcatgttttcatattct 147
             |||||||||||| |||||||||||
Sbjct: 17749 aacaatggcatgctttcatattct 17726
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>gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosome 5, complete sequence
          Length = 211763

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   actggctttggatctttcca 662
             ||||||||||||||||||||
Sbjct: 10013 actggctttggatctttcca 10032
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>gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, complete sequence
          Length = 197140

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    accaaatgaaaagattggaa 65
             ||||||||||||||||||||
Sbjct: 36638 accaaatgaaaagattggaa 36657
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>gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, complete sequence
          Length = 185574

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    accaaatgaaaagattggaa 65
             ||||||||||||||||||||
Sbjct: 44459 accaaatgaaaagattggaa 44440
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>emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5
          Length = 8601

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  acaagcgcaacctgtgcttt 367
            ||||||||||||||||||||
Sbjct: 3420 acaagcgcaacctgtgcttt 3439
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>emb|AL589202.1| Human DNA sequence from clone RP11-391F23 on chromosome 6, complete
             sequence
          Length = 52411

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   tttgactcctggcagttccc 507
             ||||||||||||||||||||
Sbjct: 26635 tttgactcctggcagttccc 26654
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>emb|AL606449.4|OSJN00004 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014F04,
              complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     gcaagtttgcaaccaaacaa 100
              ||||||||||||||||||||
Sbjct: 169372 gcaagtttgcaaccaaacaa 169353
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>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
             complete sequence
          Length = 149134

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    gcaagtttgcaaccaaacaa 100
             ||||||||||||||||||||
Sbjct: 53914 gcaagtttgcaaccaaacaa 53895
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>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
          Length = 214875

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    acaagcgcaacctgtgcttt 367
              ||||||||||||||||||||
Sbjct: 131905 acaagcgcaacctgtgcttt 131924
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>gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome 13, complete sequence
          Length = 176432

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttctgacttgcaggtaaag 33
              ||||||||||||||||||||
Sbjct: 125463 tttctgacttgcaggtaaag 125444
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>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence
          Length = 204262

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttctgacttgcaggtaaag 33
             ||||||||||||||||||||
Sbjct: 53445 tttctgacttgcaggtaaag 53426
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>gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosome 12, complete
             sequence
          Length = 186742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    atgaaaagattggaacaaaa 70
             ||||||||||||||||||||
Sbjct: 81676 atgaaaagattggaacaaaa 81657
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      gcaagtttgcaaccaaacaa 100
               ||||||||||||||||||||
Sbjct: 6891043 gcaagtttgcaaccaaacaa 6891024
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 578      ggcataacctaggttcaagg 597
                ||||||||||||||||||||
Sbjct: 11997984 ggcataacctaggttcaagg 11997965
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 578     ggcataacctaggttcaagg 597
               ||||||||||||||||||||
Sbjct: 7573455 ggcataacctaggttcaagg 7573474
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>gb|AC117406.2| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC Library D) complete
             sequence
          Length = 125360

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   aacaatggcatgttttcatattct 147
             |||||||||||| |||||||||||
Sbjct: 98134 aacaatggcatgctttcatattct 98157
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>gb|AC084631.1|CBRG45E19 Caenorhabditis briggsae cosmid G45E19, complete sequence
          Length = 40893

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     attattttatttctgacttg 24
             ||||||||||||||||||||
Sbjct: 40223 attattttatttctgacttg 40204
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>gb|AC130454.2| Homo sapiens chromosome 16 clone CTA-345G4, complete sequence
          Length = 260160

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ctaactgttgcacaacaatg 130
              ||||||||||||||||||||
Sbjct: 129256 ctaactgttgcacaacaatg 129237
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>gb|AC078941.6| Homo sapiens BAC clone RP11-180B10 from 2, complete sequence
          Length = 165176

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gaaaagattggaacaaaaca 72
              ||||||||||||||||||||
Sbjct: 109120 gaaaagattggaacaaaaca 109101
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>dbj|AP005916.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0066M12
          Length = 162198

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   ggcataacctaggttcaagg 597
             ||||||||||||||||||||
Sbjct: 81870 ggcataacctaggttcaagg 81889
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>emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 in linkage group 3
              Contains a CpG island, complete sequence
          Length = 114103

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     agacattacattacaccaaa 51
              ||||||||||||||||||||
Sbjct: 104693 agacattacattacaccaaa 104674
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>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete
             sequence
          Length = 140069

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    gcaagtttgcaaccaaacaa 100
             ||||||||||||||||||||
Sbjct: 82698 gcaagtttgcaaccaaacaa 82679
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>emb|CR318669.18| Zebrafish DNA sequence from clone CH211-51B3 in linkage group 23,
              complete sequence
          Length = 108170

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     attacaccaaatgaaaagat 60
              ||||||||||||||||||||
Sbjct: 103903 attacaccaaatgaaaagat 103884
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>emb|AL928644.12| Mouse DNA sequence from clone RP23-313J15 on chromosome 2, complete
              sequence
          Length = 219870

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    acaagcgcaacctgtgcttt 367
              ||||||||||||||||||||
Sbjct: 179966 acaagcgcaacctgtgcttt 179985
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 578      ggcataacctaggttcaagg 597
                ||||||||||||||||||||
Sbjct: 12077291 ggcataacctaggttcaagg 12077272
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>dbj|AP006419.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT43O18, TM0307,
            complete sequence
          Length = 119858

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 648  ctttggatctttccacangctgagacaaaatgttt 682
            ||||| ||||||||||| ||||  |||||||||||
Sbjct: 1401 ctttgtatctttccacatgctgcaacaaaatgttt 1367
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>dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32J05, TM0238,
             complete sequence
          Length = 131947

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   tgcagattgtagtgttgatagtgc 295
             |||| |||||||||||||||||||
Sbjct: 64181 tgcacattgtagtgttgatagtgc 64158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,828,342
Number of Sequences: 3902068
Number of extensions: 8828342
Number of successful extensions: 160980
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160559
Number of HSP's gapped (non-prelim): 421
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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