ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25p18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478636.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
3dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
4dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
5dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
6dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
7gb|AY106172.1| Zea mays PCO060652 mRNA sequence 68 3e-08
8gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, com... 44 0.49
9dbj|AK032759.1| Mus musculus 12 days embryo male wolffian duct i... 44 0.49
10dbj|AK086063.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 44 0.49
11ref|NM_001037841.1| Mus musculus chemokine-like factor (Cklf), mRNA 44 0.49
12gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, com... 42 2.0
13gb|AY380826.1| Lymphocystis disease virus - isolate China, compl... 42 2.0
14gb|AC011698.6|ATAC011698 Arabidopsis thaliana chromosome III BAC... 42 2.0
15gb|AC016829.7|ATAC016829 Arabidopsis thaliana chromosome III BAC... 42 2.0
16gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, compl... 42 2.0
17emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20... 42 2.0
18emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in ... 42 2.0
19gb|DQ174344.1| Mecaphesa naevigera isolate 340 16S ribosomal RNA... 42 2.0
20gb|S80617.1| laminin alpha 1 chain [chickens, White Leghorn, emb... 42 2.0
21dbj|AB186499.1| Uncultured bacterium genes for putative ABC-type... 42 2.0
22gb|AC154136.13| Mus musculus BAC RP23-184A3 (Roswell Park Cance... 42 2.0
23gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone ... 42 2.0
24emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chro... 42 2.0
25ref|XM_652867.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.7
26emb|AL359508.13| Human DNA sequence from clone RP11-267K7 on chr... 40 7.7
27emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chrom... 40 7.7
28emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.7
29emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 40 7.7
30emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 7.7
31gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, comp... 40 7.7
32gb|AC125621.6| Homo sapiens 3 BAC RP11-769N7 (Roswell Park Cance... 40 7.7
33gb|AF003139.2| Caenorhabditis elegans cosmid F53G12, complete se... 40 7.7
34gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Canc... 40 7.7
35emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in... 40 7.7
36gb|AC008698.6| Homo sapiens chromosome 5 clone CTB-70H11, comple... 40 7.7
37ref|NM_001020557.1| Danio rerio zgc:110025 (zgc:110025), mRNA 40 7.7
38gb|BC095139.1| Danio rerio zgc:110025, mRNA (cDNA clone MGC:1100... 40 7.7
39gb|AC016967.24| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Canc... 40 7.7
40gb|AC093762.3| Homo sapiens BAC clone RP11-90L9 from 2, complete... 40 7.7
41ref|XM_235099.3| PREDICTED: Rattus norvegicus similar to UDP-N-a... 40 7.7
42emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 i... 40 7.7
43emb|Z58621.1|HS46C12R H.sapiens CpG island DNA genomic Mse1 frag... 40 7.7
44emb|Z66056.1|HS73E8R H.sapiens CpG island DNA genomic Mse1 fragm... 40 7.7
45emb|Z66055.1|HS73E8F H.sapiens CpG island DNA genomic Mse1 fragm... 40 7.7
46gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Canc... 40 7.7
47gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 40 7.7
48gb|AC005510.3|AC005510 Homo sapiens chromosome 4 clone B368A9 ma... 40 7.7
49gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 7.7
50emb|AL807748.10| Mouse DNA sequence from clone RP23-170A3 on chr... 40 7.7 
>ref|XM_478636.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2195

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 464  agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
            |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 1751 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 1692

                                                    
Query: 524  ttgaaaagccaacctgatccctagcccctgggctcggggg 563
            |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 1691 ttgagaagccaacctgatccctggtccctggactctgggg 1652



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 229  agtttataaattctcatctcct-gttatcaagagaggaaatgggccacca 277
            |||| ||||||||||||||| | ||||||||||| ||||||| |||||||
Sbjct: 1969 agttcataaattctcatctctttgttatcaagagtggaaatgagccacca 1920



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 69   atctggcaacatcgtaaaacaagcacgccagaa 101
            ||||||||||||| |||||||||||| ||||||
Sbjct: 2095 atctggcaacatcttaaaacaagcacaccagaa 2063
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                            
Query: 464      agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
                |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 21579522 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 21579463

                                                        
Query: 524      ttgaaaagccaacctgatccctagcccctgggctcggggg 563
                |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 21579462 ttgagaagccaacctgatccctggtccctggactctgggg 21579423



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                  
Query: 229      agtttataaattctcatctcct-gttatcaagagaggaaatgggccacca 277
                |||| ||||||||||||||| | ||||||||||| ||||||| |||||||
Sbjct: 21579740 agttcataaattctcatctctttgttatcaagagtggaaatgagccacca 21579691



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 69       atctggcaacatcgtaaaacaagcacgccagaa 101
                ||||||||||||| |||||||||||| ||||||
Sbjct: 21579866 atctggcaacatcttaaaacaagcacaccagaa 21579834
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>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 464   agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
             |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 25896 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 25837

                                                     
Query: 524   ttgaaaagccaacctgatccctagcccctgggctcggggg 563
             |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 25836 ttgagaagccaacctgatccctggtccctggactctgggg 25797



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                               
Query: 229   agtttataaattctcatctcct-gttatcaagagaggaaatgggccacca 277
             |||| ||||||||||||||| | ||||||||||| ||||||| |||||||
Sbjct: 26114 agttcataaattctcatctctttgttatcaagagtggaaatgagccacca 26065



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 69    atctggcaacatcgtaaaacaagcacgccagaa 101
             ||||||||||||| |||||||||||| ||||||
Sbjct: 26240 atctggcaacatcttaaaacaagcacaccagaa 26208
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>dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D04, full
            insert sequence
          Length = 2198

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 464  agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
            |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 1752 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 1693

                                                    
Query: 524  ttgaaaagccaacctgatccctagcccctgggctcggggg 563
            |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 1692 ttgagaagccaacctgatccctggtccctggactctgggg 1653



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 229  agtttataaattctcatctcct-gttatcaagagaggaaatgggccacca 277
            |||| ||||||||||||||| | ||||||||||| ||||||| |||||||
Sbjct: 1972 agttcataaattctcatctctttgttatcaagagtggaaatgagccacca 1923



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 69   atctggcaacatcgtaaaacaagcacgccagaa 101
            ||||||||||||| |||||||||||| ||||||
Sbjct: 2098 atctggcaacatcttaaaacaagcacaccagaa 2066
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>dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D06, full
            insert sequence
          Length = 1394

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 464  agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
            |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 1010 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 951

                                                    
Query: 524  ttgaaaagccaacctgatccctagcccctgggctcggggg 563
            |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 950  ttgagaagccaacctgatccctggtccctggactctgggg 911



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 69   atctggcaacatcgtaaaacaagcacgccagaa 101
            ||||||||||||| |||||||||||| ||||||
Sbjct: 1354 atctggcaacatcttaaaacaagcacaccagaa 1322



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 229  agtttataaattctcatctcct-gttatcaagagaggaaatgggccacc 276
            |||| ||||||||||||||| | ||||||||||| ||||||| ||||||
Sbjct: 1228 agttcataaattctcatctctttgttatcaagagtggaaatgagccacc 1180
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>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1612_A04
          Length = 124833

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 464  agtatccgttaatctttcgctgtgaagatccagagtgcaatgccccattgtcagtgagcc 523
            |||| ||||||||||||||||| || |  | |||||| |||||||  |||||||||||||
Sbjct: 9978 agtaaccgttaatctttcgctgcgaggggctagagtgtaatgcccggttgtcagtgagcc 9919

                                                    
Query: 524  ttgaaaagccaacctgatccctagcccctgggctcggggg 563
            |||| ||||||||||||||||| | |||||| ||| ||||
Sbjct: 9918 ttgagaagccaacctgatccctggtccctggactctgggg 9879



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                               
Query: 229   agtttataaattctcatctcct-gttatcaagagaggaaatgggccacca 277
             |||| ||||||||||||||| | ||||||||||| ||||||| |||||||
Sbjct: 10196 agttcataaattctcatctctttgttatcaagagtggaaatgagccacca 10147



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 69    atctggcaacatcgtaaaacaagcacgccagaa 101
             ||||||||||||| |||||||||||| ||||||
Sbjct: 10322 atctggcaacatcttaaaacaagcacaccagaa 10290
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>gb|AY106172.1| Zea mays PCO060652 mRNA sequence
          Length = 1055

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 512 tgtcagtgagccttgaaaagccaacctgatccctagcccctgggct 557
           |||||||||||||||| ||||||  |||||||||||||||||||||
Sbjct: 568 tgtcagtgagccttgagaagccagactgatccctagcccctgggct 523
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>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence
          Length = 158075

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 256    caagagaggaaatgggccacca 277
              ||||||||||||||||||||||
Sbjct: 113750 caagagaggaaatgggccacca 113771
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>dbj|AK032759.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720429P16 product:CHEMOKINE-LIKE FACTOR 2 VARIANT
           1 homolog [Mus musculus], full insert sequence
          Length = 1803

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 256 caagagaggaaatgggccacca 277
           ||||||||||||||||||||||
Sbjct: 947 caagagaggaaatgggccacca 968
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>dbj|AK086063.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930001P21 product:Chemokine-like factor
           homolog [Mus musculus], full insert sequence
          Length = 1780

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 256 caagagaggaaatgggccacca 277
           ||||||||||||||||||||||
Sbjct: 948 caagagaggaaatgggccacca 969
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>ref|NM_001037841.1| Mus musculus chemokine-like factor (Cklf), mRNA
          Length = 1780

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 256 caagagaggaaatgggccacca 277
           ||||||||||||||||||||||
Sbjct: 948 caagagaggaaatgggccacca 969
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>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence
          Length = 210059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    aatagaaagtttataaattct 242
              |||||||||||||||||||||
Sbjct: 118745 aatagaaagtttataaattct 118765
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>gb|AY380826.1| Lymphocystis disease virus - isolate China, complete genome
          Length = 186250

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 472    ttaatctttcgctgtgaagat 492
              |||||||||||||||||||||
Sbjct: 159639 ttaatctttcgctgtgaagat 159619
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>gb|AC011698.6|ATAC011698 Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence,
             complete sequence
          Length = 63654

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   atgaatagaaagtttataaat 239
             |||||||||||||||||||||
Sbjct: 56156 atgaatagaaagtttataaat 56136
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>gb|AC016829.7|ATAC016829 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete
              sequence
          Length = 110804

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    atgaatagaaagtttataaat 239
              |||||||||||||||||||||
Sbjct: 101189 atgaatagaaagtttataaat 101209
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>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence
          Length = 179947

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   aattatggcaatacaatgcct 140
             |||||||||||||||||||||
Sbjct: 57570 aattatggcaatacaatgcct 57590
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>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3,
             complete sequence
          Length = 167943

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 514   tcagtgagccttgaaaagcca 534
             |||||||||||||||||||||
Sbjct: 54773 tcagtgagccttgaaaagcca 54753
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>emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in linkage group 5,
             complete sequence
          Length = 156408

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   atgtaaagcagtgagtgtgct 398
             |||||||||||||||||||||
Sbjct: 55319 atgtaaagcagtgagtgtgct 55339
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>gb|DQ174344.1| Mecaphesa naevigera isolate 340 16S ribosomal RNA gene, partial
           sequence; tRNA-Leu gene, complete sequence; and NADH
           dehydrogenase subunit 1 gene, partial sequence;
           mitochondrial
          Length = 569

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 222 aatagaaagtttataaattct 242
           |||||||||||||||||||||
Sbjct: 386 aatagaaagtttataaattct 366
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>gb|S80617.1| laminin alpha 1 chain [chickens, White Leghorn, embryos, mRNA
           Partial, 522 nt]
          Length = 522

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 tgggccaccaacttacaagag 288
           |||||||||||||||||||||
Sbjct: 222 tgggccaccaacttacaagag 242
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>dbj|AB186499.1| Uncultured bacterium genes for putative ABC-type transporter
            periplasmic sulfonate-binding protein, putative ABC-type
            transporter periplasmic sulfonate-binding protein,
            putative acetyl-xylan esterase, catBC operon
            transcriptional regulator, muconate lactonizing enzyme I,
            muconolactone delta-isomerase, catechol 1,2-dioxygenase,
            benABC operon transcriptional activator, benzoate
            dioxigenase alpha subunit, complete and partial cds,
            clone: BZO26
          Length = 9653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 352  tgctggaacaactgaacaagg 372
            |||||||||||||||||||||
Sbjct: 4559 tgctggaacaactgaacaagg 4539
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>gb|AC154136.13| Mus musculus  BAC RP23-184A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 220233

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    caacttacaagaggaacattt 296
              |||||||||||||||||||||
Sbjct: 181293 caacttacaagaggaacattt 181273
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>gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone rp23-224l16, complete
             sequence
          Length = 183349

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 390   gagtgtgcttcaggatggcca 410
             |||||||||||||||||||||
Sbjct: 82897 gagtgtgcttcaggatggcca 82917
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>emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chromosome 2, complete
              sequence
          Length = 213625

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 390    gagtgtgcttcaggatggcca 410
              |||||||||||||||||||||
Sbjct: 122574 gagtgtgcttcaggatggcca 122594
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>ref|XM_652867.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0355.2), mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  agaggaaatgggccaccaac 279
            ||||||||||||||||||||
Sbjct: 2115 agaggaaatgggccaccaac 2134
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>emb|AL359508.13| Human DNA sequence from clone RP11-267K7 on chromosome 10, complete
             sequence
          Length = 60298

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   gagactagtgcccctcctgc 329
             ||||||||||||||||||||
Sbjct: 41025 gagactagtgcccctcctgc 41044
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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gaatagaaagtttataaatt 240
             ||||||||||||||||||||
Sbjct: 26133 gaatagaaagtttataaatt 26114
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    tgcttcaggatggccatgac 414
              ||||||||||||||||||||
Sbjct: 165901 tgcttcaggatggccatgac 165882
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  tgcttcaggatggccatgac 414
            ||||||||||||||||||||
Sbjct: 2298 tgcttcaggatggccatgac 2317
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    tgcttcaggatggccatgac 414
              ||||||||||||||||||||
Sbjct: 254768 tgcttcaggatggccatgac 254749
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>gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, complete sequence
          Length = 172689

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   tggaacaactgaacaaggct 374
             ||||||||||||||||||||
Sbjct: 23522 tggaacaactgaacaaggct 23503
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>gb|AC125621.6| Homo sapiens 3 BAC RP11-769N7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85144

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   aatagaaagtttataaattctcat 245
             |||| |||||||||||||||||||
Sbjct: 27549 aataaaaagtttataaattctcat 27572
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>gb|AF003139.2| Caenorhabditis elegans cosmid F53G12, complete sequence
          Length = 41553

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   ctggaacaactgaacaaggc 373
             ||||||||||||||||||||
Sbjct: 21495 ctggaacaactgaacaaggc 21476
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>gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167906

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    tggaacaactgaacaaggct 374
              ||||||||||||||||||||
Sbjct: 157619 tggaacaactgaacaaggct 157600
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>emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2,
             complete sequence
          Length = 155396

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   catgctggaacaactgaaca 369
             ||||||||||||||||||||
Sbjct: 97455 catgctggaacaactgaaca 97474
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>gb|AC008698.6| Homo sapiens chromosome 5 clone CTB-70H11, complete sequence
          Length = 76487

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   tggaacaactgaacaaggct 374
             ||||||||||||||||||||
Sbjct: 48706 tggaacaactgaacaaggct 48725
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>ref|NM_001020557.1| Danio rerio zgc:110025 (zgc:110025), mRNA
          Length = 1511

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 catgctggaacaactgaaca 369
           ||||||||||||||||||||
Sbjct: 452 catgctggaacaactgaaca 433
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>gb|BC095139.1| Danio rerio zgc:110025, mRNA (cDNA clone MGC:110025 IMAGE:7276987),
           complete cds
          Length = 1511

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 catgctggaacaactgaaca 369
           ||||||||||||||||||||
Sbjct: 452 catgctggaacaactgaaca 433
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>gb|AC016967.24| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 140971

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   aacatttgtttgctaaaaat 309
             ||||||||||||||||||||
Sbjct: 62572 aacatttgtttgctaaaaat 62591
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>gb|AC093762.3| Homo sapiens BAC clone RP11-90L9 from 2, complete sequence
          Length = 77722

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   aacatttgtttgctaaaaat 309
             ||||||||||||||||||||
Sbjct: 52514 aacatttgtttgctaaaaat 52533
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>ref|XM_235099.3| PREDICTED: Rattus norvegicus similar to
            UDP-N-acetylglucosamine:a-1,3-D-mannoside
            beta-1,4-N-acetylgluco (predicted) (LOC299756), mRNA
          Length = 1531

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  atttgtttgctaaaaatgag 312
            ||||||||||||||||||||
Sbjct: 1304 atttgtttgctaaaaatgag 1285
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>emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 in linkage group 22,
              complete sequence
          Length = 169981

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    tacaagaggaacatttgttt 300
              ||||||||||||||||||||
Sbjct: 157514 tacaagaggaacatttgttt 157495
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>emb|Z58621.1|HS46C12R H.sapiens CpG island DNA genomic Mse1 fragment, clone 46c12,
           reverse read cpg46c12.rt1a
          Length = 146

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 tggaacaactgaacaaggct 374
           ||||||||||||||||||||
Sbjct: 87  tggaacaactgaacaaggct 68
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>emb|Z66056.1|HS73E8R H.sapiens CpG island DNA genomic Mse1 fragment, clone 73e8, reverse
           read cpg73e8.rt1a
          Length = 146

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 tggaacaactgaacaaggct 374
           ||||||||||||||||||||
Sbjct: 87  tggaacaactgaacaaggct 68
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>emb|Z66055.1|HS73E8F H.sapiens CpG island DNA genomic Mse1 fragment, clone 73e8, forward
           read cpg73e8.ft1a
          Length = 147

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 355 tggaacaactgaacaaggct 374
           ||||||||||||||||||||
Sbjct: 61  tggaacaactgaacaaggct 80
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>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167152

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    ctggcaacatcgtaaaacaa 90
             ||||||||||||||||||||
Sbjct: 26710 ctggcaacatcgtaaaacaa 26729
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    gaatagaaagtttataaatt 240
              ||||||||||||||||||||
Sbjct: 155507 gaatagaaagtttataaatt 155526
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>gb|AC005510.3|AC005510 Homo sapiens chromosome 4 clone B368A9 map 4q25, complete sequence
          Length = 168468

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   aatagaaagtttataaattctcat 245
             ||||||||| ||||||||||||||
Sbjct: 91132 aatagaaagcttataaattctcat 91109
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     caggcgggtaacaggctgat 220
               ||||||||||||||||||||
Sbjct: 2883803 caggcgggtaacaggctgat 2883784
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>emb|AL807748.10| Mouse DNA sequence from clone RP23-170A3 on chromosome 4, complete
             sequence
          Length = 170162

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   agatccagagtgcaatgccc 508
             ||||||||||||||||||||
Sbjct: 50957 agatccagagtgcaatgccc 50938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,232,206
Number of Sequences: 3902068
Number of extensions: 4232206
Number of successful extensions: 79670
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79545
Number of HSP's gapped (non-prelim): 119
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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