>KPEL_DROME (Q05652) Probable serine/threonine-protein kinase pelle (EC|
           2.7.11.1)
          Length = 501

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 443 VRENWKEQRIASEYPSLDADCLQQVKKC---IEIGLECVEIDRLKRPSIETILDK 288
           V++ W++ R+      L A   +++  C   IE GL C  +D   RPS+  +L +
Sbjct: 440 VKQQWRQNRMELLEKHLAAPMGKELDMCMCAIEAGLHCTALDPQDRPSMNAVLKR 494

>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 458 EFIKNVRENWKEQRIASEYPSLDADCL---------QQVKKCIEIGLECVEIDRLKRPSI 306
           + +  V   WKE R       +  D L         Q+V KCI+IGL CV+     RP++
Sbjct: 740 DLLSYVWSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRPAM 799

Query: 305 ETIL 294
            +++
Sbjct: 800 SSVV 803

>CSTN1_HUMAN (O94985) Calsyntenin-1 precursor|
          Length = 981

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 203 EKIQISCSMEIGDLVRHFSFLWMHIVHLACRELFLWTVSSADQSQHTPVLF 355
           +K  I CS +  D+ RH   L++H     CR +FL+    +++ ++ P  F
Sbjct: 400 KKETILCSSDKTDMNRHHYSLYVH----GCRLIFLFRQDPSEEKKYRPAEF 446

>DPO3A_STAEQ (Q5HNK2) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1065

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
 Frame = +1

Query: 1   LKLNRQHXVFGEKNIHYDEEIC-------------GVLSSYKEKYKLIGFIMTYI 126
           L+  RQH + G KN  YDE+I              G   ++   Y  I +IM+Y+
Sbjct: 652 LESERQHFIDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYL 706

>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2514

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -1

Query: 279 TMCIHKKLKCRTRSPISIEHEIWIFSAGHVQNGKDTILLLE*IIFKNNTL*YVCHYETY* 100
           ++C H  + C TR+  S+  +++I + G + +             K     Y   ++T  
Sbjct: 134 SLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQ----------AMKGVRTLYWIGFDTTQ 183

Query: 99  FVFLLVTAKYSAY 61
           F+F  +   Y AY
Sbjct: 184 FMFSAMAGSYPAY 196

>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1)
          Length = 1970

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 CPFHFAHVLLKKSKFHVRWRLET 242
           CP HF H+ L K  FHV + ++T
Sbjct: 81  CPGHFGHIELAKPVFHVGFLVKT 103

>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1)
          Length = 1970

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 CPFHFAHVLLKKSKFHVRWRLET 242
           CP HF H+ L K  FHV + ++T
Sbjct: 81  CPGHFGHIELAKPVFHVGFLVKT 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,012,586
Number of Sequences: 219361
Number of extensions: 1317957
Number of successful extensions: 2977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2977
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)