>U5S1_HUMAN (Q15029) 116 kDa U5 small nuclear ribonucleoprotein component (U5|
            snRNP-specific protein, 116 kDa) (U5-116 kDa) (Elongation
            factor Tu GTP-binding domain protein 2) (hSNU114)
          Length = 972

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 41/60 (68%), Positives = 49/60 (81%)
 Frame = -1

Query: 534  DKGIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQTADINLMM 355
            DK IV+RPLEP P  HLAREFM+KTRRRKG+SEDVSI+KFFD+ M+ ELA+Q   +N  M
Sbjct: 913  DKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM 972

>U5S1_MOUSE (O08810) 116 kDa U5 small nuclear ribonucleoprotein component (U5|
            snRNP-specific protein, 116 kDa) (U5-116 kDa) (Elongation
            factor Tu GTP-binding domain protein 2)
          Length = 971

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 41/60 (68%), Positives = 49/60 (81%)
 Frame = -1

Query: 534  DKGIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQTADINLMM 355
            DK IV+RPLEP P  HLAREFM+KTRRRKG+SEDVSI+KFFD+ M+ ELA+Q   +N  M
Sbjct: 912  DKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM 971

>SN114_YEAST (P36048) 114 kDa U5 small nuclear ribonucleoprotein component (GIN10|
            protein)
          Length = 1008

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = -1

Query: 534  DKGIVLRPLEPAPIQHLAREFMVKTRRRKGMS 439
            DK   +  L+PAPI  L+R+F++KTRRRKG+S
Sbjct: 946  DKDAFIPKLKPAPINSLSRDFVMKTRRRKGIS 977

>TCF7_HUMAN (P36402) Transcription factor 7 (T-cell-specific transcription|
           factor 1) (TCF-1) (T-cell factor 1)
          Length = 383

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 526 HCPPASGTGTHPTPCP*VHGEDQAKEG 446
           H PP SG G HP P P +H  +Q   G
Sbjct: 129 HYPPPSGAGQHPQPQPPLHKANQPPHG 155

>SYI_COXBU (Q83EC9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 936

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 322 WTIARASIIKLHHQVDIC----SLLRQLVHHGLVKELVDANILAHALPSPGLHHELTGKV 489
           WT+     + +H ++        L  Q V+  L K+LVD+ +  + +    +H  L G  
Sbjct: 243 WTLPANEAVSVHPELHYALVKSELQNQPVYLILAKDLVDSAMQRYGVDDYEVHGNLKGDA 302

Query: 490 LDGCRFQRP 516
           L+G + Q P
Sbjct: 303 LEGMQLQHP 311

>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel-1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 289  WK*YVPSAKGQWTIARASIIKLHHQVDICSLLRQLVHHGLVKELVDANILAHALPSPGLH 468
            W    P+A   W +      +  HQ    +++R  VH GL K L   ++   +L +  L 
Sbjct: 2021 WNLPAPAATENWAVTVYKAYQSMHQASDINMVRSAVHDGLTKTL--KHLTGKSLNTLTLR 2078

Query: 469  HEL 477
            H+L
Sbjct: 2079 HQL 2081

>CEP76_PONPY (Q5RCP7) Centrosomal protein of 76 kDa (Cep76 protein)|
          Length = 658

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 507 EPAPIQHLAREFMVKTRRRKGMSEDV 430
           E AP QHL+ E ++K  RR+G+ +DV
Sbjct: 39  ELAPDQHLSTEDLIKALRRRGIIDDV 64

>PTM3C_BUCBP (Q89A36) PTS system mannitol-specific EIICBA component (EIICBA-Mtl)|
           (EII-Mtl) [Includes: Mannitol permease IIC component
           (PTS system mannitol-specific EIIC component);
           Mannitol-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (P
          Length = 640

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 465 KTRRRKGMSEDVSINKFFDEAMMNELAQQTADINL 361
           + R+R   ++ +S+N F D A  NEL++   + NL
Sbjct: 438 RARKRNSNAKHLSLNSFLDNAFYNELSKYLVENNL 472

>TCF7_MOUSE (Q00417) Transcription factor 7 (T-cell-specific transcription|
           factor 1) (TCF-1) (T-cell factor 1)
          Length = 419

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 520 PPASGTGTHPTPCP*VHGE 464
           PPASG G HP P P +H +
Sbjct: 133 PPASGAGQHPQPQPPLHNK 151

>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC|
           2.3.1.43) (Glycerophospholipid-cholesterol
           acyltransferase) (GCAT)
          Length = 335

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 304 PSAKGQWTIARASIIKLHHQVDICSLLRQLVHHGLVK 414
           PSA+ Q  +  AS +  +H   + +L RQL   G+VK
Sbjct: 180 PSARSQKVVEAASHVSAYHNQLLLNLARQLAPTGMVK 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,307,900
Number of Sequences: 219361
Number of extensions: 1616029
Number of successful extensions: 3983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3983
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)