ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25o21 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 186 bits (471), Expect = 8e-47 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 4/128 (3%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 508 IHIDIMDYI PATC D FR MWAEFEWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPE 881 Query: 507 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 340 AL G CGF+AANLYA+S+FGEDAL N+SIEK V D ++G+IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLG 941 Query: 339 DKITLKQK 316 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 185 bits (469), Expect = 1e-46 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 4/128 (3%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 508 IHIDIMDYI PATC D FR MWAEFEWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPE 881 Query: 507 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 340 AL G CGF+AANLYA+S+FGEDAL N+SIEK V D ++G+IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLG 941 Query: 339 DKITLKQK 316 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 180 bits (456), Expect = 4e-45 Identities = 85/127 (66%), Positives = 103/127 (81%), Gaps = 3/127 (2%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 508 IHIDIMDYI PA+C D FR MW +FEWENKV VNT D E+L H++KSTNMKCLTP Sbjct: 832 IHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPE 891 Query: 507 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV---DGKLSGYIRIRSKTQGIALSLGD 337 AL G+CGF+AAN+YAKS+FGE+AL N+SIEK V D K++G+IRIR+K+QG+ALSLGD Sbjct: 892 KALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGD 951 Query: 336 KITLKQK 316 KI+ QK Sbjct: 952 KISSSQK 958
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 174 bits (440), Expect = 3e-43 Identities = 83/128 (64%), Positives = 100/128 (78%), Gaps = 4/128 (3%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 508 IHI+IMDYI PATC D FR MWAE EWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPE 881 Query: 507 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 340 AL G CGF+AANLYA+S+FGEDAL N+S EK + D ++ +IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLG 941 Query: 339 DKITLKQK 316 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)| (Beta-COP) (Fragment) Length = 400 Score = 147 bits (372), Expect = 2e-35 Identities = 74/121 (61%), Positives = 90/121 (74%), Gaps = 2/121 (1%) Frame = -2 Query: 687 IHIDIMDYISPAT--CADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLT 514 +HID++DYI PA DV FRN W EFEWENK+ VNT I D ++++H+ K TNM LT Sbjct: 273 LHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILT 332 Query: 513 PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLGDK 334 P L + G L+ANL AKSVFGEDAL NI IEKQ DGK+SGYIRIR+K Q IA++LG+K Sbjct: 333 PEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEK 392 Query: 333 I 331 I Sbjct: 393 I 393
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 143 bits (360), Expect = 6e-34 Identities = 68/117 (58%), Positives = 92/117 (78%), Gaps = 1/117 (0%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEK-EFLNHVIKSTNMKCLTP 511 I ++I+DYI PA + FR+MW EFEWENKV +++ +FL+ ++K TNM CLTP Sbjct: 821 IPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNEDISLYDFLHKIMKKTNMNCLTP 880 Query: 510 PSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLG 340 ++L G+CGFL+ANLYA S+FGEDAL+++S+EK V G +SG++RIRSKTQGIALSLG Sbjct: 881 DASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 134 bits (336), Expect = 3e-31 Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 4/128 (3%) Frame = -2 Query: 687 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 508 +H+DIMDYI PAT D FR MW FEWENK++V + + +L ++K TNM LTP Sbjct: 838 VHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILTPS 897 Query: 507 SAL-DGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLS---GYIRIRSKTQGIALSLG 340 +L + +C FL+ NLYAKS FGEDAL N+ IEK D K + GY+RIRSK QG+ALSLG Sbjct: 898 ESLGEDDCRFLSCNLYAKSSFGEDALANLCIEK--DSKTNDVIGYVRIRSKGQGLALSLG 955 Query: 339 DKITLKQK 316 D++ L K Sbjct: 956 DRVALIAK 963
>PHR_SYNLE (P05327) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA| photolyase) (Photoreactivating enzyme) Length = 483 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = -2 Query: 645 ADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANL 466 AD +R++W +F WEN+ A+ T + + I M+ LT + C + A+ Sbjct: 300 ADGPYRSLWQQFPWENREALFTAWTQAQ--TGYPIVDAAMRQLTETGWMHNRCRMIVASF 357 Query: 465 YAKSV 451 K + Sbjct: 358 LTKDL 362
>SPPA_ENTFC (Q9X480) Putative signal peptide peptidase sppA (EC 3.4.21.-)| Length = 344 Score = 31.6 bits (70), Expect = 2.4 Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Frame = -2 Query: 609 EWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGEC----GFLAANLYAKSVFGE 442 E ENKV V+ F+N V K NM DG + L + + E Sbjct: 213 EEENKVIQEFVMSAYDRFVNVVAKGRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSE 272 Query: 441 DALVNISIEKQVDGKLSGYIRIRSKTQGIALS-LGDKITLKQKGGS*AVTQSVAIVSCRR 265 DAL ++ EK++ + I ++ T G A S LG+KI Q G A T I + Sbjct: 273 DALDSLKKEKKLTD--ATVIEYKNDTTGFASSWLGNKIAEWQ--GLKATTSDRVISVFEK 328 Query: 264 ---STLPVSYYRYSGL 226 S P Y Y GL Sbjct: 329 LGFSDTPKPMYYYGGL 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,214,420 Number of Sequences: 219361 Number of extensions: 1682418 Number of successful extensions: 3790 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3702 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3782 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
