ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
2dbj|AK105695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
3gb|AY106458.1| Zea mays PCO146570 mRNA sequence 145 2e-31
4gb|AY739305.1| Zea mays thiol oxidoreductase (TEL1) mRNA, comple... 145 2e-31
5gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 143 6e-31
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
7gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete se... 50 0.007
8gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete se... 50 0.007
9ref|NM_101371.3| Arabidopsis thaliana ATQSOX1; electron transpor... 48 0.027
10ref|NM_179333.1| Arabidopsis thaliana ATQSOX1; electron transpor... 48 0.027
11gb|AY062528.1| Arabidopsis thaliana Unknown protein (At1g15020; ... 48 0.027
12emb|BX814527.1|CNS0AE4H Arabidopsis thaliana Full-length cDNA Co... 48 0.027
13gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D2... 48 0.027
14gb|BT001218.1| Arabidopsis thaliana Unknown protein (At1g15020) ... 48 0.027
15emb|AL121826.11|HS1010E17 Human DNA sequence from clone RP5-1010... 46 0.11
16ref|NM_126188.2| Arabidopsis thaliana ATQSOX2; electron transpor... 44 0.42
17gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, c... 44 0.42
18gb|BT000880.1| Arabidopsis thaliana clone C104697 unknown protei... 44 0.42
19gb|AY035175.1| Arabidopsis thaliana unknown protein (At2g01270) ... 44 0.42
20gb|AY125539.1| Arabidopsis thaliana At2g01270/F10A8.15 mRNA, com... 44 0.42
21gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map... 44 0.42
22gb|AY090364.1| Arabidopsis thaliana At2g01270/F10A8.15 mRNA, com... 44 0.42
23gb|AC153419.13| Mus musculus 10 BAC RP23-291D21 (Roswell Park Ca... 44 0.42
24emb|BX820469.1|CNS0AA7Q Arabidopsis thaliana Full-length cDNA Co... 44 0.42
25emb|BX819763.1|CNS0AA72 Arabidopsis thaliana Full-length cDNA Co... 44 0.42
26gb|AC152930.2| Xenopus tropicalis clone ISB1-158G10, complete se... 44 0.42
27gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosom... 42 1.6
28gb|AC004930.1| Homo sapiens PAC clone RP5-921G16 from 7, complet... 42 1.6
29gb|AC116385.5| Mus musculus chromosome 5, clone RP23-17A11, comp... 42 1.6
30gb|AC113949.2| Homo sapiens chromosome 1 clone RP11-563M18, comp... 42 1.6
31gb|AC093580.2| Homo sapiens chromosome 1 clone RP11-147G16, comp... 42 1.6
32gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome... 42 1.6
33dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.6
34emb|CR391931.7| Zebrafish DNA sequence from clone DKEY-267P8 in ... 42 1.6
35gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.5
36gb|AE008674.1| Rickettsia conorii str. Malish 7, section 106 of ... 40 6.5
37gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, com... 40 6.5
38emb|AL596260.5| Human DNA sequence from clone RP11-241I17 on chr... 40 6.5
39emb|AL513132.6| Human DNA sequence from clone RP11-460C6 on chro... 40 6.5
40gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 40 6.5
41emb|AL356732.10| Human DNA sequence from clone RP11-190K16 on ch... 40 6.5
42gb|AC092905.10| Homo sapiens 3 BAC RP11-702L6 (Roswell Park Canc... 40 6.5
43gb|AC067733.22| Homo sapiens 3 BAC RP11-148K3 (Roswell Park Canc... 40 6.5
44gb|AC135610.5| Pan troglodytes clone rp43-11n14, complete sequence 40 6.5
45gb|AC091778.13| Papio anubis clone rp41-280n2, complete sequence 40 6.5
46gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 40 6.5
47gb|AC092365.3| Homo sapiens chromosome 16 clone RP11-450B4, comp... 40 6.5
48dbj|AK029208.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 6.5
49gb|AC007064.27| Homo sapiens Chromosome 22q11 PAC Clone p87o8 in... 40 6.5
50gb|AC006548.22| Homo sapiens chromosome 22 clone p20k14 map 22q1... 40 6.5
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
52dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
53gb|AC007601.7| Homo sapiens chromosome 16 clone RP11-276H1, comp... 40 6.5
54dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
55emb|BX649351.10| Zebrafish DNA sequence from clone CH211-168F19 ... 40 6.5
56dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
57dbj|AK058968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
58gb|AY109194.1| Zea mays PCO118178 mRNA sequence 40 6.5
59gb|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete seq... 40 6.5
60gb|AY319292.1| Rickettsia peacockii truncated OmpA (ompA) gene, ... 40 6.5
61gb|AY357766.1|AY357766S1 Rickettsia peacockii Crestone truncated... 40 6.5
62gb|AY357765.1|AY357765S1 Rickettsia peacockii Skalkaho truncated... 40 6.5
63gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complet... 40 6.5
64emb|AL954178.8| Mouse DNA sequence from clone RP23-21J10 on chro... 40 6.5
65emb|AL928973.3| Mouse DNA sequence from clone RP23-259J7 on chro... 40 6.5
66gb|AC171183.6| Mus musculus BAC RP24-545B2 (Roswell Park Cancer... 40 6.5
67emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chr... 40 6.5 
>dbj|AK121660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064B04, full
            insert sequence
          Length = 1947

 Score =  226 bits (114), Expect = 5e-56
 Identities = 153/166 (92%)
 Strand = Plus / Minus

                                                                        
Query: 261  cctctgatgaagtgctcggtgagcaaccggtgggctgtttttcagttccagttctttctt 320
            |||||||||||||||  |||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 1658 cctctgatgaagtgcagggtgagcaactggtaggctatttttcagttccagttctttctt 1599

                                                                        
Query: 321  tgctttctgttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctg 380
            ||||||||||||||||||||||  |||||||||||||| || || |||||||||||||||
Sbjct: 1598 tgctttctgttcttctgctgggccctccagaagcaagccagcgccccaaatgtacagctg 1539

                                                          
Query: 381  gcaacggcaacacccagggcagctccaattgggactcttgcagcat 426
            ||||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1538 gcaatcgcaacacccagggcagctccaattgggacgcttgcagcat 1493
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>dbj|AK105695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C09, full
            insert sequence
          Length = 1871

 Score =  226 bits (114), Expect = 5e-56
 Identities = 153/166 (92%)
 Strand = Plus / Minus

                                                                        
Query: 261  cctctgatgaagtgctcggtgagcaaccggtgggctgtttttcagttccagttctttctt 320
            |||||||||||||||  |||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 1582 cctctgatgaagtgcagggtgagcaactggtaggctatttttcagttccagttctttctt 1523

                                                                        
Query: 321  tgctttctgttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctg 380
            ||||||||||||||||||||||  |||||||||||||| || || |||||||||||||||
Sbjct: 1522 tgctttctgttcttctgctgggccctccagaagcaagccagcgccccaaatgtacagctg 1463

                                                          
Query: 381  gcaacggcaacacccagggcagctccaattgggactcttgcagcat 426
            ||||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1462 gcaatcgcaacacccagggcagctccaattgggacgcttgcagcat 1417
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>gb|AY106458.1| Zea mays PCO146570 mRNA sequence
          Length = 946

 Score =  145 bits (73), Expect = 2e-31
 Identities = 100/109 (91%)
 Strand = Plus / Minus

                                                                       
Query: 301 ttcagttccagttctttctttgctttctgttcttctgctgggttctccagaagcaagcta 360
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 676 ttcagttccagttctttctttgctttctgttcttctgttgggtcctccagaagcatgcta 617

                                                            
Query: 361 gtgctccaaatgtacagctggcaacggcaacacccagggcagctccaat 409
           | || |||||||||||||| |||| ||| | ||||||||||||||||||
Sbjct: 616 gcgccccaaatgtacagctagcaagggcgatacccagggcagctccaat 568
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>gb|AY739305.1| Zea mays thiol oxidoreductase (TEL1) mRNA, complete cds
          Length = 2018

 Score =  145 bits (73), Expect = 2e-31
 Identities = 100/109 (91%)
 Strand = Plus / Minus

                                                                        
Query: 301  ttcagttccagttctttctttgctttctgttcttctgctgggttctccagaagcaagcta 360
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 1697 ttcagttccagttctttctttgctttctgttcttctgttgggtcctccagaagcatgcta 1638

                                                             
Query: 361  gtgctccaaatgtacagctggcaacggcaacacccagggcagctccaat 409
            | || |||||||||||||| |||| ||| | ||||||||||||||||||
Sbjct: 1637 gcgccccaaatgtacagctagcaagggcgatacccagggcagctccaat 1589
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                          
Query: 323    ctttctgttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
              ||||||||||||||||||||  |||||||||||||| || || |||||||||||||||||
Sbjct: 129242 ctttctgttcttctgctgggccctccagaagcaagccagcgccccaaatgtacagctggc 129301

                                                          
Query: 383    aacggcaacacccagggcagctccaattgggactcttgcagcat 426
              ||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 129302 aatcgcaacacccagggcagctccaattgggacgcttgcagcat 129345



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                          
Query: 261    cctctgatgaagtgctcggtgagcaaccggtgggctgtttttcagttccagttctttctt 320
              |||||||||||||||  |||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 129035 cctctgatgaagtgcagggtgagcaactggtaggctatttttcagttccagttctttctt 129094

                 
Query: 321    tgc 323
              |||
Sbjct: 129095 tgc 129097
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                            
Query: 323      ctttctgttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
                ||||||||||||||||||||  |||||||||||||| || || |||||||||||||||||
Sbjct: 27254274 ctttctgttcttctgctgggccctccagaagcaagccagcgccccaaatgtacagctggc 27254333

                                                            
Query: 383      aacggcaacacccagggcagctccaattgggactcttgcagcat 426
                ||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27254334 aatcgcaacacccagggcagctccaattgggacgcttgcagcat 27254377



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                            
Query: 261      cctctgatgaagtgctcggtgagcaaccggtgggctgtttttcagttccagttctttctt 320
                |||||||||||||||  |||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 27254067 cctctgatgaagtgcagggtgagcaactggtaggctatttttcagttccagttctttctt 27254126

                   
Query: 321      tgc 323
                |||
Sbjct: 27254127 tgc 27254129
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>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence
          Length = 124271

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 140   atgcttctgtaagtttttcatctgt 164
             |||||||||||||||||||||||||
Sbjct: 50557 atgcttctgtaagtttttcatctgt 50533
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>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence
          Length = 118242

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 140   atgcttctgtaagtttttcatctgt 164
             |||||||||||||||||||||||||
Sbjct: 44529 atgcttctgtaagtttttcatctgt 44505
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>ref|NM_101371.3| Arabidopsis thaliana ATQSOX1; electron transporter/ thiol-disulfide
            exchange intermediate AT1G15020 (ATQSOX1) transcript
            variant AT1G15020.2 mRNA, complete cds
          Length = 1918

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
            |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 1597 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 1554
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>ref|NM_179333.1| Arabidopsis thaliana ATQSOX1; electron transporter/ thiol-disulfide
            exchange intermediate AT1G15020 (ATQSOX1) transcript
            variant AT1G15020.1 mRNA, complete cds
          Length = 1773

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
            |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 1597 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 1554
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>gb|AY062528.1| Arabidopsis thaliana Unknown protein (At1g15020; T15D22.8) mRNA,
            complete cds
          Length = 1917

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
            |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 1597 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 1554
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>emb|BX814527.1|CNS0AE4H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB79ZC02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1869

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
            |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 1558 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 1515
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>gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete
             sequence
          Length = 23652

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 329   gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
             |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 12428 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 12471
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>gb|BT001218.1| Arabidopsis thaliana Unknown protein (At1g15020) mRNA, complete cds
          Length = 1730

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatg 372
            |||||||||||| || |||||| |||| |||||||| |||||||
Sbjct: 1482 gttcttctgctgcgtcctccagtagcaggctagtgccccaaatg 1439
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>emb|AL121826.11|HS1010E17 Human DNA sequence from clone RP5-1010E17 on chromosome 20 Contains a
             putative novel gene, ESTs, STSs and GSSs, complete
             sequence
          Length = 126045

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 299   ttttcagttccagttctttcttt 321
             |||||||||||||||||||||||
Sbjct: 88420 ttttcagttccagttctttcttt 88398
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>ref|NM_126188.2| Arabidopsis thaliana ATQSOX2; electron transporter/ thiol-disulfide
            exchange intermediate AT2G01270 (ATQSOX2) mRNA, complete
            cds
          Length = 2029

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1589 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1536
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>gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, complete sequence
          Length = 193434

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 76     aactagtatatggtaaaaacag 97
              ||||||||||||||||||||||
Sbjct: 185061 aactagtatatggtaaaaacag 185040
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>gb|BT000880.1| Arabidopsis thaliana clone C104697 unknown protein (At2g01270) mRNA,
            complete cds
          Length = 1519

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1467 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1414
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>gb|AY035175.1| Arabidopsis thaliana unknown protein (At2g01270) mRNA, complete cds
          Length = 1855

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1589 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1536
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>gb|AY125539.1| Arabidopsis thaliana At2g01270/F10A8.15 mRNA, complete cds
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1467 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1414
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>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
             sequence
          Length = 94029

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 329   gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
             |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 51630 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 51577
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>gb|AY090364.1| Arabidopsis thaliana At2g01270/F10A8.15 mRNA, complete cds
          Length = 1904

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1589 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1536
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>gb|AC153419.13| Mus musculus 10 BAC RP23-291D21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 199606

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 76    aactagtatatggtaaaaacag 97
             ||||||||||||||||||||||
Sbjct: 64111 aactagtatatggtaaaaacag 64090
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>emb|BX820469.1|CNS0AA7Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH38ZC10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1836

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1581 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1528
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>emb|BX819763.1|CNS0AA72 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS24ZF07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1877

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 329  gttcttctgctgggttctccagaagcaagctagtgctccaaatgtacagctggc 382
            |||||||||||| || |||||| | ||||| || || ||||||| |||||||||
Sbjct: 1576 gttcttctgctgtgtcctccagtaacaagcaagcgccccaaatgcacagctggc 1523
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>gb|AC152930.2| Xenopus tropicalis clone ISB1-158G10, complete sequence
          Length = 95175

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 313   tctttctttgctttctgttctt 334
             ||||||||||||||||||||||
Sbjct: 51706 tctttctttgctttctgttctt 51685
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>gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosome 9, complete sequence
          Length = 201524

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 319   tttgctttctgttcttctgct 339
             |||||||||||||||||||||
Sbjct: 33818 tttgctttctgttcttctgct 33798
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>gb|AC004930.1| Homo sapiens PAC clone RP5-921G16 from 7, complete sequence
          Length = 118451

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   tttctgttcttctgctgggtt 344
             |||||||||||||||||||||
Sbjct: 52615 tttctgttcttctgctgggtt 52635
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>gb|AC116385.5| Mus musculus chromosome 5, clone RP23-17A11, complete sequence
          Length = 217711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 355   aagctagtgctccaaatgtac 375
             |||||||||||||||||||||
Sbjct: 90799 aagctagtgctccaaatgtac 90779
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>gb|AC113949.2| Homo sapiens chromosome 1 clone RP11-563M18, complete sequence
          Length = 172143

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 324    tttctgttcttctgctgggtt 344
              |||||||||||||||||||||
Sbjct: 155884 tttctgttcttctgctgggtt 155904
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>gb|AC093580.2| Homo sapiens chromosome 1 clone RP11-147G16, complete sequence
          Length = 172658

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 324  tttctgttcttctgctgggtt 344
            |||||||||||||||||||||
Sbjct: 7152 tttctgttcttctgctgggtt 7172
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>gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome 14, complete sequence
          Length = 199716

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     taaaaacagaactacattttg 109
              |||||||||||||||||||||
Sbjct: 130400 taaaaacagaactacattttg 130420
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>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete
             sequence
          Length = 177483

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tctgtaagtttttcatctgta 165
             |||||||||||||||||||||
Sbjct: 66425 tctgtaagtttttcatctgta 66445
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>emb|CR391931.7| Zebrafish DNA sequence from clone DKEY-267P8 in linkage group 23,
              complete sequence
          Length = 136484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    tctgatgaagtgctcggtgag 283
              |||||||||||||||||||||
Sbjct: 135076 tctgatgaagtgctcggtgag 135096
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 380     ggcaacggcaacacccagggcagc 403
               ||||||||||| ||||||||||||
Sbjct: 2160450 ggcaacggcaaaacccagggcagc 2160473
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>gb|AE008674.1| Rickettsia conorii str. Malish 7, section 106 of 114 of the complete
            genome
          Length = 10078

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  ggcacctctgatgaagtgct 276
            ||||||||||||||||||||
Sbjct: 6977 ggcacctctgatgaagtgct 6958
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>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence
          Length = 205816

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   acagctccatcattgaattgtgtg 195
             |||||| |||||||||||||||||
Sbjct: 27785 acagctgcatcattgaattgtgtg 27808
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>emb|AL596260.5| Human DNA sequence from clone RP11-241I17 on chromosome 10, complete
             sequence
          Length = 51435

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   agttccagttctttctttgc 323
             ||||||||||||||||||||
Sbjct: 36688 agttccagttctttctttgc 36669
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>emb|AL513132.6| Human DNA sequence from clone RP11-460C6 on chromosome 9 Contains a malic
              enzyme pseudogene, complete sequence
          Length = 180296

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    tttctgttcttctgctgggt 343
              ||||||||||||||||||||
Sbjct: 116813 tttctgttcttctgctgggt 116794
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>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    acagctccatcattgaattgtgtg 195
              |||||| |||||||||||||||||
Sbjct: 193991 acagctgcatcattgaattgtgtg 194014
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>emb|AL356732.10| Human DNA sequence from clone RP11-190K16 on chromosome 13 Contains an
             ADP-ribosylation factor pseudogene and part of a novel
             gene (FLJ22153), complete sequence
          Length = 77950

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   actacttaccaggattttta 227
             ||||||||||||||||||||
Sbjct: 73065 actacttaccaggattttta 73046
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>gb|AC092905.10| Homo sapiens 3 BAC RP11-702L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151764

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aaaacagaactacattttga 110
             ||||||||||||||||||||
Sbjct: 94858 aaaacagaactacattttga 94839
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>gb|AC067733.22| Homo sapiens 3 BAC RP11-148K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   actacttaccaggattttta 227
             ||||||||||||||||||||
Sbjct: 54427 actacttaccaggattttta 54446
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>gb|AC135610.5| Pan troglodytes clone rp43-11n14, complete sequence
          Length = 154701

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 303   cagttccagttctttctttgcttt 326
             ||||||| ||||||||||||||||
Sbjct: 92152 cagttcctgttctttctttgcttt 92175
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>gb|AC091778.13| Papio anubis clone rp41-280n2, complete sequence
          Length = 183807

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 311   gttctttctttgctttctgttctt 334
             ||||||||||||| ||||||||||
Sbjct: 17063 gttctttctttgcattctgttctt 17040
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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    aaatgtacagctggcaacggcaac 391
              |||||||| |||||||||||||||
Sbjct: 173195 aaatgtaccgctggcaacggcaac 173218
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>gb|AC092365.3| Homo sapiens chromosome 16 clone RP11-450B4, complete sequence
          Length = 181329

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tcaaatgggcagcaacagct 50
              ||||||||||||||||||||
Sbjct: 164557 tcaaatgggcagcaacagct 164576
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>dbj|AK029208.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4831421K23 product:unclassifiable, full
            insert sequence
          Length = 4364

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 172  acagctccatcattgaattgtgtg 195
            |||||| |||||||||||||||||
Sbjct: 3318 acagctgcatcattgaattgtgtg 3341
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>gb|AC007064.27| Homo sapiens Chromosome 22q11 PAC Clone p87o8 in CES region, complete
             sequence
          Length = 124823

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 303   cagttccagttctttctttgcttt 326
             ||||||| ||||||||||||||||
Sbjct: 77323 cagttcctgttctttctttgcttt 77300
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>gb|AC006548.22| Homo sapiens chromosome 22 clone p20k14 map 22q11, complete sequence
          Length = 200149

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 303   cagttccagttctttctttgcttt 326
             ||||||| ||||||||||||||||
Sbjct: 14699 cagttcctgttctttctttgcttt 14676
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 299      ttttcagttccagttctttc 318
                ||||||||||||||||||||
Sbjct: 23954366 ttttcagttccagttctttc 23954385
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      gcgctctctgtgaactactt 214
                ||||||||||||||||||||
Sbjct: 16576363 gcgctctctgtgaactactt 16576344
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>gb|AC007601.7| Homo sapiens chromosome 16 clone RP11-276H1, complete sequence
          Length = 161864

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  tcaaatgggcagcaacagct 50
           ||||||||||||||||||||
Sbjct: 181 tcaaatgggcagcaacagct 200
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>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0583E12
          Length = 152449

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   gcgctctctgtgaactactt 214
             ||||||||||||||||||||
Sbjct: 72343 gcgctctctgtgaactactt 72324
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>emb|BX649351.10| Zebrafish DNA sequence from clone CH211-168F19 in linkage group 4,
              complete sequence
          Length = 144569

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tttttcatctgtataaatga 172
              ||||||||||||||||||||
Sbjct: 117372 tttttcatctgtataaatga 117391
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   ttttcagttccagttctttc 318
             ||||||||||||||||||||
Sbjct: 87517 ttttcagttccagttctttc 87536
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>dbj|AK058968.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C10, full
           insert sequence
          Length = 1393

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gcgctctctgtgaactactt 214
           ||||||||||||||||||||
Sbjct: 537 gcgctctctgtgaactactt 556
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>gb|AY109194.1| Zea mays PCO118178 mRNA sequence
          Length = 501

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gcgctctctgtgaactactt 214
           ||||||||||||||||||||
Sbjct: 11  gcgctctctgtgaactactt 30
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>gb|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete sequence
          Length = 209382

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    tcaaatgggcagcaacagct 50
             ||||||||||||||||||||
Sbjct: 44521 tcaaatgggcagcaacagct 44502
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>gb|AY319292.1| Rickettsia peacockii truncated OmpA (ompA) gene, complete cds
          Length = 1978

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 ggcacctctgatgaagtgct 276
           ||||||||||||||||||||
Sbjct: 390 ggcacctctgatgaagtgct 409
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>gb|AY357766.1|AY357766S1 Rickettsia peacockii Crestone truncated OmpA (ompA) gene, complete
           cds
          Length = 1978

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 ggcacctctgatgaagtgct 276
           ||||||||||||||||||||
Sbjct: 390 ggcacctctgatgaagtgct 409
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>gb|AY357765.1|AY357765S1 Rickettsia peacockii Skalkaho truncated OmpA (ompA) gene, complete
           cds
          Length = 1978

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 ggcacctctgatgaagtgct 276
           ||||||||||||||||||||
Sbjct: 390 ggcacctctgatgaagtgct 409
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>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 172   acagctccatcattgaattgtgtg 195
             |||||| |||||||||||||||||
Sbjct: 43815 acagctgcatcattgaattgtgtg 43792
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>emb|AL954178.8| Mouse DNA sequence from clone RP23-21J10 on chromosome X, complete
             sequence
          Length = 103135

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aagtttttcatctgtataaa 169
             ||||||||||||||||||||
Sbjct: 70712 aagtttttcatctgtataaa 70693
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>emb|AL928973.3| Mouse DNA sequence from clone RP23-259J7 on chromosome 2, complete
              sequence
          Length = 157458

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    tttttcatctgtataaatga 172
              ||||||||||||||||||||
Sbjct: 121879 tttttcatctgtataaatga 121860
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>gb|AC171183.6| Mus musculus  BAC RP24-545B2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211697

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    caacacccagggcagctcca 407
              ||||||||||||||||||||
Sbjct: 164880 caacacccagggcagctcca 164861
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>emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chromosome 4, complete
              sequence
          Length = 213495

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    gtttttcatctgtataaatg 171
              ||||||||||||||||||||
Sbjct: 123676 gtttttcatctgtataaatg 123657


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,801,333
Number of Sequences: 3902068
Number of extensions: 4801333
Number of successful extensions: 95220
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95032
Number of HSP's gapped (non-prelim): 188
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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