ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRDH_SFVKA (Q9Q8X0) Transcript release DNA helicase (EC 3.6.1.-) 32 0.88
2TRDH_MYXVL (Q9Q8J2) Transcript release DNA helicase (EC 3.6.1.-) 31 2.0
3ADH1_RAT (P06757) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol ... 29 9.7

>TRDH_SFVKA (Q9Q8X0) Transcript release DNA helicase (EC 3.6.1.-)|
          Length = 478

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 261 QKKHTKKSSLHSYPYVHFDTCAHSLHHCTLQVISSSTNKIGLESKG*NSAKEQ 419
           ++  + K ++  +P        HSL   T +++S ST+K+G E +G    KE+
Sbjct: 414 RESESVKKTVFLFPNTSIREIKHSLGFFTERIVSISTDKLGFEQEGIEGTKEE 466



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>TRDH_MYXVL (Q9Q8J2) Transcript release DNA helicase (EC 3.6.1.-)|
          Length = 478

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 261 QKKHTKKSSLHSYPYVHFDTCAHSLHHCTLQVISSSTNKIGLESKG*NSAKEQ 419
           ++  + K ++  +P        HSL   T +++S ST+K+G + +G    KE+
Sbjct: 414 RESESVKKTVFLFPNTSIREIKHSLGFFTERIVSVSTDKLGFQQEGKEGTKEE 466



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>ADH1_RAT (P06757) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol|
           dehydrogenase A subunit)
          Length = 375

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 90  CTKPGCKFI-LIQPH-GTTQLSKYPGSNIRAQTRHNFKKKNWITD 218
           C KPG K I L  P  G  ++ K+P SN+  QT++  + K  + D
Sbjct: 82  CVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLD 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,475,853
Number of Sequences: 219361
Number of extensions: 1537734
Number of successful extensions: 3459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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