| Clone Name | rbags25o17 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | TRDH_SFVKA (Q9Q8X0) Transcript release DNA helicase (EC 3.6.1.-) | 32 | 0.88 | 2 | TRDH_MYXVL (Q9Q8J2) Transcript release DNA helicase (EC 3.6.1.-) | 31 | 2.0 | 3 | ADH1_RAT (P06757) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol ... | 29 | 9.7 |
|---|
>TRDH_SFVKA (Q9Q8X0) Transcript release DNA helicase (EC 3.6.1.-)| Length = 478 Score = 32.3 bits (72), Expect = 0.88 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = +3 Query: 261 QKKHTKKSSLHSYPYVHFDTCAHSLHHCTLQVISSSTNKIGLESKG*NSAKEQ 419 ++ + K ++ +P HSL T +++S ST+K+G E +G KE+ Sbjct: 414 RESESVKKTVFLFPNTSIREIKHSLGFFTERIVSISTDKLGFEQEGIEGTKEE 466
>TRDH_MYXVL (Q9Q8J2) Transcript release DNA helicase (EC 3.6.1.-)| Length = 478 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = +3 Query: 261 QKKHTKKSSLHSYPYVHFDTCAHSLHHCTLQVISSSTNKIGLESKG*NSAKEQ 419 ++ + K ++ +P HSL T +++S ST+K+G + +G KE+ Sbjct: 414 RESESVKKTVFLFPNTSIREIKHSLGFFTERIVSVSTDKLGFQQEGKEGTKEE 466
>ADH1_RAT (P06757) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol| dehydrogenase A subunit) Length = 375 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 90 CTKPGCKFI-LIQPH-GTTQLSKYPGSNIRAQTRHNFKKKNWITD 218 C KPG K I L P G ++ K+P SN+ QT++ + K + D Sbjct: 82 CVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLD 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,475,853 Number of Sequences: 219361 Number of extensions: 1537734 Number of successful extensions: 3459 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3459 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)