ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26d17 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 133 bits (334), Expect = 4e-31 Identities = 66/102 (64%), Positives = 81/102 (79%) Frame = -3 Query: 599 SRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTL 420 SRAI+VVQ +TP AK + ++ PK LE F +AE+++NI EH LVPEH V+ EEK L Sbjct: 101 SRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAEL 160 Query: 419 LARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 LARY LK++QLPRIQ DP+ARY+GL+RGQVVKIIRPSETAG Sbjct: 161 LARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAG 202
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 131 bits (330), Expect = 1e-30 Identities = 66/102 (64%), Positives = 79/102 (77%) Frame = -3 Query: 599 SRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTL 420 +RA++VVQQ +TP AK L ++ PK LE F E+LINI EH LVPEH V+ EE L Sbjct: 100 TRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTEL 159 Query: 419 LARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 LARY L+E+QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAG Sbjct: 160 LARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 131 bits (329), Expect = 2e-30 Identities = 66/102 (64%), Positives = 78/102 (76%) Frame = -3 Query: 599 SRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTL 420 +RA++VVQQ +TP AK L ++ PK LE F E+LINI EH LVPEH V+ EE L Sbjct: 100 TRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTEL 159 Query: 419 LARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 LARY L+E QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAG Sbjct: 160 LARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 131 bits (329), Expect = 2e-30 Identities = 66/102 (64%), Positives = 78/102 (76%) Frame = -3 Query: 599 SRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTL 420 +RA++VVQQ +TP AK L ++ PK LE F E+LINI EH LVPEH V+ EE L Sbjct: 100 TRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTEL 159 Query: 419 LARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 LARY L+E QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAG Sbjct: 160 LARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 110 bits (276), Expect = 2e-24 Identities = 51/99 (51%), Positives = 74/99 (74%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 IL+ ++TP A + + + +E FQ++++++NI H LVP+H +L+ +EKK LL R Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y L+ETQLPRIQ+ DP+ARY GLKRG+VVKI+R SET+G Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSG 201
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 110 bits (274), Expect = 4e-24 Identities = 55/99 (55%), Positives = 72/99 (72%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 ILV + N+TP A + + P ++ FQ+ ++L+NI +HVLVP H L+ EKK LL R Sbjct: 106 ILVYENNMTPSANRLIPSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLER 164 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+ARY GL+RGQ+VKIIR SET+G Sbjct: 165 YRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSG 203
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 108 bits (269), Expect = 2e-23 Identities = 54/102 (52%), Positives = 71/102 (69%) Frame = -3 Query: 599 SRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTL 420 S I + Q ++TP A + + P +E FQ+ ++++NI H LVP+H LA +EKK L Sbjct: 105 STGIFIYQSSITPSANKLIPTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKEL 163 Query: 419 LARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 L RY LKE+QLPRIQ DP+ RY GLKRG+VVKIIR SET+G Sbjct: 164 LERYRLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSG 205
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 105 bits (261), Expect = 1e-22 Identities = 53/99 (53%), Positives = 70/99 (70%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 I V Q N+TP A + + P +E F +A +++NI H LVP+H L+++EK+ LL R Sbjct: 109 IFVYQNNITPSAMKLVPSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKR 167 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+A Y GLKRG+VVKIIR SET+G Sbjct: 168 YRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSG 206
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 103 bits (258), Expect = 3e-22 Identities = 54/99 (54%), Positives = 67/99 (67%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 I + Q N+TP A + + P +E F +A +++NI H LVP+H L EEK LL R Sbjct: 109 IFIYQNNITPSAMKLVPSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKR 167 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+A Y GLKRG+VVKIIR SETAG Sbjct: 168 YRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAG 206
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 103 bits (257), Expect = 4e-22 Identities = 53/99 (53%), Positives = 68/99 (68%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 I + Q +TP A L + P +E F + +++NI H LVP+H L++EEKK LL R Sbjct: 109 IFIYQNGITPSALKLLPSVAPAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKR 167 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+A Y GLKRG+VVKIIR SET+G Sbjct: 168 YRLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSG 206
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 103 bits (256), Expect = 5e-22 Identities = 52/99 (52%), Positives = 68/99 (68%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 I + Q +TP A L P + +E F +A +++NI H LVP+H L++ EKK LL R Sbjct: 109 IFIYQSGITPSANKILPTAAPAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKR 167 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+A Y GLKRG+V+KIIR SET+G Sbjct: 168 YRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSG 206
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 102 bits (255), Expect = 6e-22 Identities = 52/99 (52%), Positives = 67/99 (67%) Frame = -3 Query: 590 ILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLAR 411 I + Q +TP A L P + +E F +A +++NI H LVP+H L+ EKK LL R Sbjct: 109 IFIYQSGITPSANKILPTAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKR 167 Query: 410 YTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 Y LKE+QLPRIQ DP+A Y GLKRG+V+KIIR SET+G Sbjct: 168 YRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSG 206
>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 69.7 bits (169), Expect = 6e-12 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 NI +HVLVPEH++L+ EEKK LL +Y + QLP+I+ +DP + G K G +++I R S Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67 Query: 305 ETAG 294 TAG Sbjct: 68 PTAG 71
>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 69.3 bits (168), Expect = 8e-12 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 NI +HVLVPEH++L+ EEKK LL +Y + QLP+I+ +DP + G K G +++I R S Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67 Query: 305 ETAG 294 TAG Sbjct: 68 PTAG 71
>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 68.2 bits (165), Expect = 2e-11 Identities = 33/64 (51%), Positives = 45/64 (70%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 +I +HVLVPEH+VL+ EEKK LL +Y + QLP+I+ +DP + G K G V++I R S Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEIKRKS 67 Query: 305 ETAG 294 TAG Sbjct: 68 PTAG 71
>RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = -3 Query: 500 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVK 321 A+ NI +HVLVPEH++L+ EEK+ LL +Y ++ +QLP+I+ +DP G K G V++ Sbjct: 3 AKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIE 62 Query: 320 IIRPSETAG 294 I R S TAG Sbjct: 63 IKRKSPTAG 71
>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 65.5 bits (158), Expect = 1e-10 Identities = 28/65 (43%), Positives = 44/65 (67%) Frame = -3 Query: 488 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 309 + + +H+LVP+H+++ EE + +L RY +K QLP+I DP+ + G K G VV++IR Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60 Query: 308 SETAG 294 S TAG Sbjct: 61 SPTAG 65
>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 76 Score = 63.2 bits (152), Expect = 6e-10 Identities = 31/67 (46%), Positives = 45/67 (67%) Frame = -3 Query: 494 MLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKII 315 M +++H+LVP+H+VL+ EE + LL + + QLP+I+ DPIA+ G K G +VKI Sbjct: 1 MKFKLQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKIT 60 Query: 314 RPSETAG 294 R S TAG Sbjct: 61 RKSLTAG 67
>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.7.7.6) (RPB5)| Length = 77 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/62 (50%), Positives = 39/62 (62%) Frame = -3 Query: 482 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSE 303 I +H LVPEH +L E K +L QLP+I+ TDP+A+ G KRG +VKIIR S Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64 Query: 302 TA 297 TA Sbjct: 65 TA 66
>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 61.6 bits (148), Expect = 2e-09 Identities = 31/64 (48%), Positives = 43/64 (67%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 +I H LVPEH++L+ EE K LL RY ++ +QLP+I+ +DP G K G V++I R S Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67 Query: 305 ETAG 294 TAG Sbjct: 68 RTAG 71
>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 60.8 bits (146), Expect = 3e-09 Identities = 25/64 (39%), Positives = 46/64 (71%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 ++ +H VP+H++++ E K++L++Y +++ QLP+I++ DP+ + G G VVKI R S Sbjct: 5 SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKS 64 Query: 305 ETAG 294 +TAG Sbjct: 65 QTAG 68
>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 60.1 bits (144), Expect = 5e-09 Identities = 24/64 (37%), Positives = 47/64 (73%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 306 ++ +H VP+H++++ E K++L++Y +++ QLP+I++ DP+++ G G VV+I R S Sbjct: 5 SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKS 64 Query: 305 ETAG 294 +TAG Sbjct: 65 QTAG 68
>RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 58.9 bits (141), Expect = 1e-08 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = -3 Query: 488 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 309 + + H +VPEH+++ +E LL +Y +K Q P++ I+DP+ G K G +VKI R Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60 Query: 308 SETAG 294 S+TAG Sbjct: 61 SQTAG 65
>RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/69 (40%), Positives = 44/69 (63%) Frame = -3 Query: 500 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVK 321 +++ I+ +H LVP+H+VL+ EE +L +K QLP I+ +DPIA+ G K G ++K Sbjct: 5 SKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIK 64 Query: 320 IIRPSETAG 294 I R S +G Sbjct: 65 ITRKSSLSG 73
>RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 90 Score = 56.6 bits (135), Expect = 5e-08 Identities = 29/63 (46%), Positives = 39/63 (61%) Frame = -3 Query: 482 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSE 303 I EH VPEH++L+ EE +L +K QLP+I + DPIAR K G +++I R S Sbjct: 12 ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEITRRSY 71 Query: 302 TAG 294 TAG Sbjct: 72 TAG 74
>RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 56.2 bits (134), Expect = 7e-08 Identities = 27/65 (41%), Positives = 38/65 (58%) Frame = -3 Query: 488 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 309 + I H +VP H+++ EE LL +Y++K Q P++ TDP+ G G VVKI R Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60 Query: 308 SETAG 294 S TAG Sbjct: 61 SPTAG 65
>RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/65 (41%), Positives = 39/65 (60%) Frame = -3 Query: 488 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 309 I+I H LVP+H++L EE L+ +K QLP I+ +DP+A+ G K G ++KI R Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68 Query: 308 SETAG 294 S G Sbjct: 69 SPFTG 73
>RPO5_MIMIV (Q5UPX7) DNA-directed RNA polymerase subunit 5 (EC 2.7.7.6)| Length = 205 Score = 55.1 bits (131), Expect = 2e-07 Identities = 24/74 (32%), Positives = 44/74 (59%) Frame = -3 Query: 515 EVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKR 336 ++F++ E L ++ + P Q+L+ E +++ Y L +I +DPI RY+ LK+ Sbjct: 123 QIFKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKK 182 Query: 335 GQVVKIIRPSETAG 294 +++IIRPS T+G Sbjct: 183 NDIIRIIRPSATSG 196
>RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI-----ARYYGLKRGQVVK 321 N+ +H LVPEH +++ EE+KT+L +++ LPRI DP+ A + +K G V+K Sbjct: 5 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 64 Query: 320 IIRPSETAG 294 IIR S T G Sbjct: 65 IIRNSPTMG 73
>RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 75 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/57 (49%), Positives = 36/57 (63%) Frame = -3 Query: 464 VPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 294 V E V+ EE K LL R L+ QLP I+ +DP+A+ G K G V+KI+R S TAG Sbjct: 8 VKEVTVIPREEAKELLKRMKLRPWQLPWIRASDPLAQKAGAKPGDVLKIVRESPTAG 64
>RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/65 (38%), Positives = 40/65 (61%) Frame = -3 Query: 488 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 309 I+ + H LVP+H+VL +E +L ++ QLP I+ +DP+AR K G +++IIR Sbjct: 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRK 68 Query: 308 SETAG 294 S+ G Sbjct: 69 SQLYG 73
>RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Frame = -3 Query: 485 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI-----ARYYGLKRGQVVK 321 N+ +H LVPEH ++ EE+K +L +++ LP+I DP A + +K G ++K Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64 Query: 320 IIRPSETAG 294 I+R S T G Sbjct: 65 IVRKSPTMG 73
>RPOH_HALSA (P15740) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 75 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/64 (40%), Positives = 39/64 (60%) Frame = -3 Query: 491 LINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIR 312 ++++ +H LVPEH VL E +LA Y + T+LP+I+ DP A + G VV+I+R Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59 Query: 311 PSET 300 S T Sbjct: 60 DSRT 63
>RPOH_METKA (Q8TXI5) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 92 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 7/77 (9%) Frame = -3 Query: 503 DAEMLINIKEHVLVPEHQVLANEEK-KTLLARYTLKETQLPRIQITDPIARYYG------ 345 D ++++N HVLVP+H+V+ +EE+ + +L +++ LPRI DP+ Sbjct: 6 DPDVVLN---HVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKR 62 Query: 344 LKRGQVVKIIRPSETAG 294 +K G +VKI+R S TAG Sbjct: 63 IKPGSLVKIVRDSPTAG 79
>MATK_PSINU (Q8WI35) Maturase K (Intron maturase)| Length = 503 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 135 GSYACYVSGFLNKPSVWSISKILMLYHCFKNFIEQYRTETSVLR 4 G +CY SG ++ +W IL L C K +++++ T V+R Sbjct: 405 GDLSCYYSGSFSRDGLWRAKYILQL-SCAKTLAQKHKSTTRVVR 447
>PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma antigen| NY-SAR-84/NY-SAR-104) Length = 1154 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Frame = +3 Query: 216 CKNHHVLGSLISLCVLSYNIAICDVSAGCLAGPDDLH------HLPSLEAIVPRNGIRNL 377 C++ LG LI C+ ++ + DV+ GCLA + + PS +AIV R +RNL Sbjct: 717 CRDPFKLGGLI--CLGHVSLKLEDVALGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNL 774
>ALCA_BORPE (P65199) Alcaligin biosynthesis enzyme (EC 1.-.-.-)| Length = 461 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 120 NRHTILKNGGLKRCRFSPSKRMGMCVMCHV-CNCKNHHVLGSLISLCVLSYNIAIC 284 NR+T+L N L+ CR+ P + H+ C+ H L+ S+ I C Sbjct: 292 NRYTLLTNSELRACRYDPLQERFQLDFQHLDCDRPFSHATDGLVLATGYSHEIPAC 347
>ALCA_BORPA (P65200) Alcaligin biosynthesis enzyme (EC 1.-.-.-)| Length = 461 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 120 NRHTILKNGGLKRCRFSPSKRMGMCVMCHV-CNCKNHHVLGSLISLCVLSYNIAIC 284 NR+T+L N L+ CR+ P + H+ C+ H L+ S+ I C Sbjct: 292 NRYTLLTNSELRACRYDPLQERFQLDFQHLDCDRPFSHATDGLVLATGYSHEIPAC 347
>ALCA_BORBR (Q44740) Alcaligin biosynthesis enzyme (EC 1.-.-.-)| Length = 461 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 120 NRHTILKNGGLKRCRFSPSKRMGMCVMCHV-CNCKNHHVLGSLISLCVLSYNIAIC 284 NR+T+L N L+ CR+ P + H+ C+ H L+ S+ I C Sbjct: 292 NRYTLLTNSELRACRYDPLQERFQLDFQHLDCDRPFSHATDGLVLATGYSHEIPAC 347
>UPP_SULTO (Q975Z7) Probable uracil phosphoribosyltransferase (EC 2.4.2.9)| (UMP pyrophosphorylase) (UPRTase) Length = 216 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = -3 Query: 527 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYY 348 ++ +E+F + INIK++V++ + + L A +K+ + RI I I Y Sbjct: 117 EMEVEIFYNKIPEINIKDNVIIADPMIAT--ASTMLKALNIIKDKKPKRIFIVSIIISEY 174 Query: 347 GLKR 336 GLKR Sbjct: 175 GLKR 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,835,553 Number of Sequences: 219361 Number of extensions: 2034056 Number of successful extensions: 5378 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 5203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5374 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
