ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
2dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
3gb|AY105601.1| Zea mays PCO088367 mRNA sequence 276 8e-71
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6gb|DQ213090.1| Taeniopygia guttata clone 0058P0012G03 DNA direct... 70 9e-09
7ref|XM_512960.1| PREDICTED: Pan troglodytes similar to DNA-direc... 62 2e-06
8gb|BC034144.1| Homo sapiens polymerase (RNA) II (DNA directed) p... 62 2e-06
9gb|BC004441.1| Homo sapiens polymerase (RNA) II (DNA directed) p... 62 2e-06
10dbj|AK122813.1| Homo sapiens cDNA FLJ16409 fis, clone BLADE20029... 62 2e-06
11gb|S42643.1| RNA polymerase II [human, mRNA, 144 nt] 62 2e-06
12ref|NM_002695.2| Homo sapiens polymerase (RNA) II (DNA directed)... 62 2e-06
13gb|J04965.1|HUMRNAPII Human RNA polymerase II 23kD subunit (POLR... 62 2e-06
14ref|NM_113130.2| Arabidopsis thaliana ATRPABC24.3; DNA binding /... 60 9e-06
15gb|AF412101.1|AF412101 Arabidopsis thaliana AT3g22320/MCB17_5 mR... 60 9e-06
16gb|AF370551.1|AF370551 Arabidopsis thaliana RNA polymerase I, II... 60 9e-06
17gb|AY086150.1| Arabidopsis thaliana clone 21828 mRNA, complete s... 60 9e-06
18ref|XM_216839.3| PREDICTED: Rattus norvegicus polymerase (RNA) I... 60 9e-06
19gb|BT002130.1| Arabidopsis thaliana RNA polymerase I, II and III... 60 9e-06
20gb|AF019248.1|AF019248 Arabidopsis thaliana RNA polymerase I, II... 60 9e-06
21dbj|D38251.1|HUMRPB5 Homo sapiens mRNA for RPB5 (XAP4), complete... 58 3e-05
22ref|XM_993991.1| PREDICTED: Mus musculus polymerase (RNA) II (DN... 54 5e-04
23ref|XM_282920.4| PREDICTED: Mus musculus polymerase (RNA) II (DN... 54 5e-04
24ref|XM_914488.2| PREDICTED: Mus musculus polymerase (RNA) II (DN... 54 5e-04
25emb|CR860977.1| Pongo pygmaeus mRNA; cDNA DKFZp459G0627 (from cl... 54 5e-04
26ref|NM_001038093.1| Bos taurus polymerase (RNA) II (DNA directed... 54 5e-04
27dbj|AK145201.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cD... 54 5e-04
28dbj|AK132109.1| Mus musculus 13 days embryo head cDNA, RIKEN ful... 54 5e-04
29dbj|AK144668.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 54 5e-04
30dbj|AK088610.1| Mus musculus 2 days neonate thymus thymic cells ... 54 5e-04
31gb|BC111280.1| Bos taurus cDNA clone MGC:134612 IMAGE:8067228, c... 54 5e-04
32dbj|AK015823.1| Mus musculus adult male testis cDNA, RIKEN full-... 54 5e-04
33gb|AC004151.1|AC004151 Homo sapiens chromosome 19, cosmid R28738... 54 5e-04
34gb|BC005599.1| Mus musculus cDNA clone IMAGE:3482525, containing... 54 5e-04
35gb|BC045521.1| Mus musculus polymerase (RNA) II (DNA directed) p... 54 5e-04
36gb|BC037681.1| Mus musculus polymerase (RNA) II (DNA directed) p... 54 5e-04
37dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 52 0.002
38ref|XM_418224.1| PREDICTED: Gallus gallus similar to DNA-directe... 50 0.008
39emb|BX935442.2| Gallus gallus finished cDNA, clone ChEST254l2 50 0.008
40emb|BX935423.2| Gallus gallus finished cDNA, clone ChEST505h16 50 0.008
41emb|CR385484.1| Gallus gallus finished cDNA, clone ChEST974k21 50 0.008
42emb|BX930905.2| Gallus gallus finished cDNA, clone ChEST967e2 50 0.008
43emb|BX929663.1| Gallus gallus finished cDNA, clone ChEST799b22 50 0.008
44dbj|AB022215.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 50 0.008
45ref|NM_112541.1| Arabidopsis thaliana DNA binding / DNA-directed... 46 0.13
46dbj|AK010567.1| Mus musculus ES cells cDNA, RIKEN full-length en... 46 0.13
47dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 46 0.13
48gb|BT014445.1| Lycopersicon esculentum clone 133771F, mRNA sequence 44 0.52
49gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, comple... 42 2.1
50emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123... 42 2.1
51ref|XM_515897.1| PREDICTED: Pan troglodytes similar to BC004636 ... 40 8.2
52ref|NM_024770.1| Homo sapiens methyltransferase like 8 (METTL8),... 40 8.2
53gb|AC161284.2| Pan troglodytes BAC clone CH251-341A21 from chrom... 40 8.2
54gb|AC147022.3| Pan troglodytes BAC clone RP43-86C7 from 7, compl... 40 8.2
55gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, com... 40 8.2
56gb|AC002065.2| Homo sapiens BAC clone CTB-21N8 from 7, complete ... 40 8.2
57ref|XM_754890.1| Ustilago maydis 521 hypothetical protein (UM038... 40 8.2
58gb|AC116709.4| Mus musculus chromosome 1, clone RP23-91L14, comp... 40 8.2
59gb|AF192980.2| Trypanosoma cruzi flagellar calcium binding prote... 40 8.2
60dbj|AK124092.1| Homo sapiens cDNA FLJ42098 fis, clone TESOP2006041 40 8.2
61dbj|AK093218.1| Homo sapiens cDNA FLJ35899 fis, clone TESTI20095... 40 8.2
62emb|CR595622.1| full-length cDNA clone CS0DD006YH02 of Neuroblas... 40 8.2
63dbj|AK024046.1| Homo sapiens cDNA FLJ13984 fis, clone Y79AA1001846 40 8.2
64gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, comp... 40 8.2
65ref|XM_685585.1| PREDICTED: Danio rerio similar to MGC83846 prot... 40 8.2
66emb|BX649437.8| Zebrafish DNA sequence from clone DKEY-28J9 in l... 40 8.2
67emb|BX465198.11| Zebrafish DNA sequence from clone DKEYP-84E12 i... 40 8.2
68dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
69gb|AC007739.2| Homo sapiens BAC clone RP11-91L3 from 2, complete... 40 8.2
70gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 8.2
71dbj|AB154820.1| Cynops pyrrhogaster Sox1 mRNA for SOX1, complete... 40 8.2
72gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
73emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.2
74gb|L26971.1|TRBFCABP Trypanosoma cruzi calcium-binding protein m... 40 8.2
75gb|M59961.1|PFABSA P.falciparum blood stage antigen (41-3) gene,... 40 8.2 
>dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128E13, full
           insert sequence
          Length = 986

 Score =  349 bits (176), Expect = 7e-93
 Identities = 287/324 (88%)
 Strand = Plus / Minus

                                                                       
Query: 266 atacaacatagcgatatgtgacgtatctgccggctgtctcgctgggcctgatgatcttca 325
           |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 749 atacaacataacgatatgtaacatatctgccggctgtctcgctgggcctgatgatcttca 690

                                                                       
Query: 326 ccacctgccctcgcttgaggccatagtacctcgcaatgggatccgtaatctgtattcttg 385
           | ||||| |||||  |||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 689 caacctgtcctcgtctgaggccatagtaccttgcaatagggtccgtaatttgtattcttg 630

                                                                       
Query: 386 gtagctgagtttcctttaaagtgtaccgcgccaataacgtcttcttttcctcgttagcaa 445
           | |||||||||||||||| |||||||||| ||||||| |||||||||||||| ||   ||
Sbjct: 629 gaagctgagtttcctttagagtgtaccgctccaataatgtcttcttttcctcattgttaa 570

                                                                       
Query: 446 gcacttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcct 505
           |||||||||| || ||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct: 569 gcacttgatgttcaggaacgagaacatgttccttgatatttataagcaattcggcttcct 510

                                                                       
Query: 506 ggaaaacctccaagtggatctttggctccagttcttggaggaacgatttcgcaaatgggg 565
           ||||||  |||||||||||||||||||| | |||||| || || ||  | |||||||| |
Sbjct: 509 ggaaaatttccaagtggatctttggctctaattcttgaagaaatgaccttgcaaatggag 450

                                   
Query: 566 tgaggttctgttgcacaaccaata 589
           ||||||||||||| | ||||||||
Sbjct: 449 tgaggttctgttgaagaaccaata 426



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                            
Query: 24  ttctgtattgttctataaagttcttgaaacaatg-gtacaacatgagga 71
           ||||||| |||| |||| |||||||||||||| | ||||||||||||||
Sbjct: 968 ttctgtactgtt-tatacagttcttgaaacaaagtgtacaacatgagga 921
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>dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F07, full
           insert sequence
          Length = 950

 Score =  349 bits (176), Expect = 7e-93
 Identities = 287/324 (88%)
 Strand = Plus / Minus

                                                                       
Query: 266 atacaacatagcgatatgtgacgtatctgccggctgtctcgctgggcctgatgatcttca 325
           |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 707 atacaacataacgatatgtaacatatctgccggctgtctcgctgggcctgatgatcttca 648

                                                                       
Query: 326 ccacctgccctcgcttgaggccatagtacctcgcaatgggatccgtaatctgtattcttg 385
           | ||||| |||||  |||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 647 caacctgtcctcgtctgaggccatagtaccttgcaatagggtccgtaatttgtattcttg 588

                                                                       
Query: 386 gtagctgagtttcctttaaagtgtaccgcgccaataacgtcttcttttcctcgttagcaa 445
           | |||||||||||||||| |||||||||| ||||||| |||||||||||||| ||   ||
Sbjct: 587 gaagctgagtttcctttagagtgtaccgctccaataatgtcttcttttcctcattgttaa 528

                                                                       
Query: 446 gcacttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcct 505
           |||||||||| || ||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct: 527 gcacttgatgttcaggaacgagaacatgttccttgatatttataagcaattcggcttcct 468

                                                                       
Query: 506 ggaaaacctccaagtggatctttggctccagttcttggaggaacgatttcgcaaatgggg 565
           ||||||  |||||||||||||||||||| | |||||| || || ||  | |||||||| |
Sbjct: 467 ggaaaatttccaagtggatctttggctctaattcttgaagaaatgaccttgcaaatggag 408

                                   
Query: 566 tgaggttctgttgcacaaccaata 589
           ||||||||||||| | ||||||||
Sbjct: 407 tgaggttctgttgaagaaccaata 384



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                            
Query: 24  ttctgtattgttctataaagttcttgaaacaatg-gtacaacatgagga 71
           ||||||| |||| |||| |||||||||||||| | ||||||||||||||
Sbjct: 926 ttctgtactgtt-tatacagttcttgaaacaaagtgtacaacatgagga 879
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>gb|AY105601.1| Zea mays PCO088367 mRNA sequence
          Length = 1112

 Score =  276 bits (139), Expect = 8e-71
 Identities = 271/315 (86%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctgtcatacaacatagcgatatgtgacgtatctgccggctgtctcgctgggcctgatgat 320
           |||||||||||| || || ||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 782 ctgtcatacaacgtaccggtatgtaacgtatctgcccgccgtctcgctgggcctgatgat 723

                                                                       
Query: 321 cttcaccacctgccctcgcttgaggccatagtacctcgcaatgggatccgtaatctgtat 380
           |||||| ||||| |||||| | ||||| |||||||| ||||| |||||||| ||||||||
Sbjct: 722 cttcacgacctggcctcgcctcaggccgtagtacctagcaataggatccgtgatctgtat 663

                                                                       
Query: 381 tcttggtagctgagtttcctttaaagtgtaccgcgccaataacgtcttcttttcctcgtt 440
           |||||| |||||||||||||| || ||||||||| |||  | ||||||||| ||||||||
Sbjct: 662 tcttggaagctgagtttccttcaaggtgtaccgctccagaagcgtcttcttctcctcgtt 603

                                                                       
Query: 441 agcaagcacttgatgctccggaacaagaacatgttccttgatatttataagcatttcggc 500
            |  ||||| |||||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 602 tgtgagcacctgatgctcaggaacaaggacatgttccttgatgtttataagcatctcggc 543

                                                                       
Query: 501 gtcctggaaaacctccaagtggatctttggctccagttcttggaggaacgatttcgcaaa 560
            ||||||||||  ||||  |||||||| |||||||| |||  ||| ||||| ||||||||
Sbjct: 542 ctcctggaaaatttccagatggatcttcggctccagctctatgagaaacgacttcgcaaa 483

                          
Query: 561 tggggtgaggttctg 575
            || || ||||||||
Sbjct: 482 cggagttaggttctg 468
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 114/126 (90%)
 Strand = Plus / Plus

                                                                            
Query: 266      atacaacatagcgatatgtgacgtatctgccggctgtctcgctgggcctgatgatcttca 325
                |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 34157241 atacaacataacgatatgtaacatatctgccggctgtctcgctgggcctgatgatcttca 34157300

                                                                            
Query: 326      ccacctgccctcgcttgaggccatagtacctcgcaatgggatccgtaatctgtattcttg 385
                | ||||| |||||  |||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 34157301 caacctgtcctcgtctgaggccatagtaccttgcaatagggtccgtaatttgtattcttg 34157360

                      
Query: 386      gtagct 391
                | ||||
Sbjct: 34157361 gaagct 34157366



 Score =  135 bits (68), Expect = 2e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                            
Query: 390      ctgagtttcctttaaagtgtaccgcgccaataacgtcttcttttcctcgttagcaagcac 449
                |||||||||||||| |||||||||| ||||||| |||||||||||||| ||   ||||||
Sbjct: 34158146 ctgagtttcctttagagtgtaccgctccaataatgtcttcttttcctcattgttaagcac 34158205

                                                                        
Query: 450      ttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcct 505
                |||||| || ||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct: 34158206 ttgatgttcaggaacgagaacatgttccttgatatttataagcaattcggcttcct 34158261



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 503      cctggaaaacctccaagtggatctttggctccagttcttggaggaacgatttcgcaaatg 562
                |||||||||  |||||||||||||||||||| | |||||| || || ||  | |||||||
Sbjct: 34158389 cctggaaaatttccaagtggatctttggctctaattcttgaagaaatgaccttgcaaatg 34158448

                                           
Query: 563      gggtgaggttctgttgcacaaccaata 589
                | |||||||||||||| | ||||||||
Sbjct: 34158449 gagtgaggttctgttgaagaaccaata 34158475



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                                 
Query: 24       ttctgtattgttctataaagttcttgaaacaatg-gtacaacatgagga 71
                ||||||| |||| |||| |||||||||||||| | ||||||||||||||
Sbjct: 34157022 ttctgtactgtt-tatacagttcttgaaacaaagtgtacaacatgagga 34157069
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score =  155 bits (78), Expect = 2e-34
 Identities = 114/126 (90%)
 Strand = Plus / Plus

                                                                          
Query: 266    atacaacatagcgatatgtgacgtatctgccggctgtctcgctgggcctgatgatcttca 325
              |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 153719 atacaacataacgatatgtaacatatctgccggctgtctcgctgggcctgatgatcttca 153778

                                                                          
Query: 326    ccacctgccctcgcttgaggccatagtacctcgcaatgggatccgtaatctgtattcttg 385
              | ||||| |||||  |||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 153779 caacctgtcctcgtctgaggccatagtaccttgcaatagggtccgtaatttgtattcttg 153838

                    
Query: 386    gtagct 391
              | ||||
Sbjct: 153839 gaagct 153844



 Score =  135 bits (68), Expect = 2e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                          
Query: 390    ctgagtttcctttaaagtgtaccgcgccaataacgtcttcttttcctcgttagcaagcac 449
              |||||||||||||| |||||||||| ||||||| |||||||||||||| ||   ||||||
Sbjct: 154624 ctgagtttcctttagagtgtaccgctccaataatgtcttcttttcctcattgttaagcac 154683

                                                                      
Query: 450    ttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcct 505
              |||||| || ||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct: 154684 ttgatgttcaggaacgagaacatgttccttgatatttataagcaattcggcttcct 154739



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                          
Query: 503    cctggaaaacctccaagtggatctttggctccagttcttggaggaacgatttcgcaaatg 562
              |||||||||  |||||||||||||||||||| | |||||| || || ||  | |||||||
Sbjct: 154867 cctggaaaatttccaagtggatctttggctctaattcttgaagaaatgaccttgcaaatg 154926

                                         
Query: 563    gggtgaggttctgttgcacaaccaata 589
              | |||||||||||||| | ||||||||
Sbjct: 154927 gagtgaggttctgttgaagaaccaata 154953



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                               
Query: 24     ttctgtattgttctataaagttcttgaaacaatg-gtacaacatgagga 71
              ||||||| |||| |||| |||||||||||||| | ||||||||||||||
Sbjct: 153500 ttctgtactgtt-tatacagttcttgaaacaaagtgtacaacatgagga 153547
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>gb|DQ213090.1| Taeniopygia guttata clone 0058P0012G03 DNA directed RNA polymerase
           II polypeptide E-like mRNA, complete sequence
          Length = 920

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 625 gtgatgtacctgcccgctgtctcgctgggcctgatgatcttcactacctggccacgctt 567
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>ref|XM_512960.1| PREDICTED: Pan troglodytes similar to DNA-directed RNA polymerase
           II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1) (XAP4)
           (LOC456359), mRNA
          Length = 686

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 647 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 589
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>gb|BC034144.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa, mRNA (cDNA clone MGC:32760 IMAGE:4617000),
           complete cds
          Length = 1284

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 656 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 598
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>gb|BC004441.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa, mRNA (cDNA clone MGC:4035 IMAGE:2820565),
           complete cds
          Length = 1248

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 636 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 578
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>dbj|AK122813.1| Homo sapiens cDNA FLJ16409 fis, clone BLADE2002972, highly  similar
            to DNA-DIRECTED RNA POLYMERASE II 23 KDA POLYPEPTIDE (EC
            2.7.7.6)
          Length = 2440

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 283  gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
            |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 1853 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 1795
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>gb|S42643.1| RNA polymerase II [human, mRNA, 144 nt]
          Length = 144

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 128 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 70
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>ref|NM_002695.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa (POLR2E), mRNA
          Length = 1238

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 636 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 578
to top
>gb|J04965.1|HUMRNAPII Human RNA polymerase II 23kD subunit (POLR2) mRNA, complete cds
          Length = 1212

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 638 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgcccacgctt 580
to top
>ref|NM_113130.2| Arabidopsis thaliana ATRPABC24.3; DNA binding / DNA-directed RNA
           polymerase AT3G22320 (ATRPABC24.3) mRNA, complete cds
          Length = 896

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 553 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 494

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 493 aaaacttcca 484



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 445 gcaaacggggtcaagttctgttgcacaaccaaaatagc 408
to top
>gb|AF412101.1|AF412101 Arabidopsis thaliana AT3g22320/MCB17_5 mRNA, complete cds
          Length = 898

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 554 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 495

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 494 aaaacttcca 485



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 446 gcaaacggggtcaagttctgttgcacaaccaaaatagc 409
to top
>gb|AF370551.1|AF370551 Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit
           (MCB17.4) mRNA, complete cds
          Length = 895

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 553 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 494

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 493 aaaacttcca 484



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 445 gcaaacggggtcaagttctgttgcacaaccaaaatagc 408
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>gb|AY086150.1| Arabidopsis thaliana clone 21828 mRNA, complete sequence
          Length = 877

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 553 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 494

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 493 aaaacttcca 484



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 445 gcaaacggggtcaagttctgttgcacaaccaaaatagc 408
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>ref|XM_216839.3| PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed)
           polypeptide E (predicted) (Polr2e_predicted), mRNA
          Length = 666

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 294 gccggctgtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           |||||||||||| ||||| | ||| |||||||| ||||||||||||||||
Sbjct: 636 gccggctgtctcactggggcggataatcttcacaacctgccctcgcttga 587
to top
>gb|BT002130.1| Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit
           (At3g22310) mRNA, complete cds
          Length = 651

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 434 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 375

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 374 aaaacttcca 365



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 326 gcaaacggggtcaagttctgttgcacaaccaaaatagc 289
to top
>gb|AF019248.1|AF019248 Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit
           (AtRPABC24.3) mRNA, complete cds
          Length = 903

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 acttgatgctccggaacaagaacatgttccttgatatttataagcatttcggcgtcctgg 507
           ||||||||||| ||||||||||||||||| || || || |  |||||||| || ||||||
Sbjct: 548 acttgatgctcaggaacaagaacatgttctttaatgttcactagcatttccgcctcctgg 489

                     
Query: 508 aaaacctcca 517
           ||||| ||||
Sbjct: 488 aaaacttcca 479



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 556 gcaaatggggtgaggttctgttgcacaaccaatatagc 593
           ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 440 gcaaacggggtcaagttctgttgcacaaccaaaatagc 403
to top
>dbj|D38251.1|HUMRPB5 Homo sapiens mRNA for RPB5 (XAP4), complete cds
          Length = 1254

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccc 335
           |||| ||| ||||| || ||||| ||||||| |||||||||||||||||||||
Sbjct: 644 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgccc 592
to top
>ref|XM_993991.1| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed)
           polypeptide E, transcript variant 1 (Polr2e), mRNA
          Length = 744

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 697 gtctcactggggcggatgatcttcacgacctgccctcgcttga 655
to top
>ref|XM_282920.4| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed)
           polypeptide E, transcript variant 1 (Polr2e), mRNA
          Length = 744

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 697 gtctcactggggcggatgatcttcacgacctgccctcgcttga 655
to top
>ref|XM_914488.2| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed)
           polypeptide E, transcript variant 5 (Polr2e), mRNA
          Length = 744

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 697 gtctcactggggcggatgatcttcacgacctgccctcgcttga 655
to top
>emb|CR860977.1| Pongo pygmaeus mRNA; cDNA DKFZp459G0627 (from clone DKFZp459G0627)
          Length = 1312

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || ||||| ||||| | ||||||||||||||||||||| |||||
Sbjct: 660 gtgatgtacctgcccgccgtctcactgggtcggatgatcttcaccacctgcccacgctt 602
to top
>ref|NM_001038093.1| Bos taurus polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
           (POLR2E), mRNA
          Length = 1441

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || |||||||| |||| |||||||||||||||||| || |||||
Sbjct: 688 gtgatgtacctgcccgcagtctcgctcggccggatgatcttcaccacctgtccgcgctt 630
to top
>dbj|AK145201.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN
           full-length enriched library, clone:G930018N02
           product:polymerase (RNA) II (DNA directed) polypeptide
           E, full insert sequence
          Length = 1072

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 680 gtctcactggggcggatgatcttcacgacctgccctcgcttga 638
to top
>dbj|AK132109.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3110030A22 product:polymerase (RNA) II
           (DNA directed) polypeptide E, full insert sequence
          Length = 1059

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 671 gtctcactggggcggatgatcttcacgacctgccctcgcttga 629
to top
>dbj|AK144668.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730021L05 product:polymerase (RNA) II
           (DNA directed) polypeptide E, full insert sequence
          Length = 1065

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 677 gtctcactggggcggatgatcttcacgacctgccctcgcttga 635
to top
>dbj|AK088610.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430021J08
           product:DNA-DIRECTED RNA POLYMERASE II 23 KDA
           POLYPEPTIDE (EC 2.7.7.6) (RPB25) (XAP4) (RPB5) homolog
           [Homo sapiens], full insert sequence
          Length = 1061

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 673 gtctcactggggcggatgatcttcacgacctgccctcgcttga 631
to top
>gb|BC111280.1| Bos taurus cDNA clone MGC:134612 IMAGE:8067228, complete cds
          Length = 1441

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 283 gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           |||| ||| ||||| || |||||||| |||| |||||||||||||||||| || |||||
Sbjct: 688 gtgatgtacctgcccgcagtctcgctcggccggatgatcttcaccacctgtccgcgctt 630
to top
>dbj|AK015823.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930518E05 product:polymerase (RNA) II
           (DNA directed) polypeptide E, full insert sequence
          Length = 1009

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 614 gtctcactggggcggatgatcttcacgacctgccctcgcttga 572
to top
>gb|AC004151.1|AC004151 Homo sapiens chromosome 19, cosmid R28738, complete sequence
          Length = 35116

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 283   gtgacgtatctgccggctgtctcgctgggcctgatgatcttcaccacctgc 333
             |||| ||| ||||| || ||||| ||||||| |||||||||||||||||||
Sbjct: 17208 gtgatgtacctgccagccgtctcactgggccggatgatcttcaccacctgc 17258
to top
>gb|BC005599.1| Mus musculus cDNA clone IMAGE:3482525, containing frame-shift
           errors
          Length = 1084

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 668 gtctcactggggcggatgatcttcacgacctgccctcgcttga 626
to top
>gb|BC045521.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide E,
           transcript variant 1, mRNA (cDNA clone MGC:56729
           IMAGE:2647754), complete cds
          Length = 1022

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 616 gtctcactggggcggatgatcttcacgacctgccctcgcttga 574
to top
>gb|BC037681.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide E, mRNA
            (cDNA clone IMAGE:3156885), complete cds
          Length = 2429

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 301  gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
            ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 2011 gtctcactggggcggatgatcttcacgacctgccctcgcttga 1969
to top
>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
             sequence
          Length = 186656

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 302   tctcgctgggcctgatgatcttcaccacctgccc 335
             |||||||||||| |||||||||||| ||||||||
Sbjct: 52070 tctcgctgggccggatgatcttcactacctgccc 52037
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>ref|XM_418224.1| PREDICTED: Gallus gallus similar to DNA-directed RNA polymerase II
           23 kDa polypeptide (RPB25) (XAP4) (RPB5) (RPABC1)
           (LOC420103), mRNA
          Length = 880

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 545 gtctcactgggtcttatgatcttcaccacctggcctcgctt 505
to top
>emb|BX935442.2| Gallus gallus finished cDNA, clone ChEST254l2
          Length = 939

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 606 gtctcactgggtcttatgatcttcaccacctggcctcgctt 566
to top
>emb|BX935423.2| Gallus gallus finished cDNA, clone ChEST505h16
          Length = 951

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 618 gtctcactgggtcttatgatcttcaccacctggcctcgctt 578
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>emb|CR385484.1| Gallus gallus finished cDNA, clone ChEST974k21
          Length = 930

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 594 gtctcactgggtcttatgatcttcaccacctggcctcgctt 554
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>emb|BX930905.2| Gallus gallus finished cDNA, clone ChEST967e2
          Length = 947

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 614 gtctcactgggtcttatgatcttcaccacctggcctcgctt 574
to top
>emb|BX929663.1| Gallus gallus finished cDNA, clone ChEST799b22
          Length = 953

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
           ||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 615 gtctcactgggtcttatgatcttcaccacctggcctcgctt 575
to top
>dbj|AB022215.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB17
          Length = 83205

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 448   acttgatgctccggaacaagaacatgttc 476
             ||||||||||| |||||||||||||||||
Sbjct: 11565 acttgatgctcaggaacaagaacatgttc 11593



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 556   gcaaatggggtgaggttctgttgcacaaccaatatagc 593
             ||||| ||||| | |||||||||||||||||| |||||
Sbjct: 11764 gcaaacggggtcaagttctgttgcacaaccaaaatagc 11801
to top
>ref|NM_112541.1| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase
           AT3G16680 mRNA, complete cds
          Length = 613

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 449 cttgatgctccggaacaagaacatgttcctt 479
           |||||||||| ||||||| ||||||||||||
Sbjct: 430 cttgatgctcaggaacaaaaacatgttcctt 400
to top
>dbj|AK010567.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410021N14 product:polymerase (RNA) II (DNA
           directed) polypeptide E, full insert sequence
          Length = 1018

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 301 gtctcgctgggcctgatgatcttcaccacctgccctcgcttga 343
           ||||| ||||| | |||||||||||| |||| |||||||||||
Sbjct: 624 gtctcactggggcggatgatcttcacgacctcccctcgcttga 582
to top
>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6
          Length = 79459

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 449   cttgatgctccggaacaagaacatgttcctt 479
             |||||||||| ||||||| ||||||||||||
Sbjct: 50028 cttgatgctcaggaacaaaaacatgttcctt 49998
to top
>gb|BT014445.1| Lycopersicon esculentum clone 133771F, mRNA sequence
          Length = 1001

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 492 catttcggcgtcctggaaaacctccaagtggatctttg 529
           |||||| || ||||| |||||||||||||||| |||||
Sbjct: 548 catttctgcctcctgaaaaacctccaagtggaactttg 511
to top
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence
          Length = 193376

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 301  gtctcgctgggcctgatgatcttcaccacctgccctcgctt 341
            ||||||||||| |  || ||||||||||||||||| |||||
Sbjct: 6052 gtctcgctgggacgtataatcttcaccacctgcccgcgctt 6012
to top
>emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123D4 on chromosome 20q12 Contains
              STSs and GSSs, complete sequence
          Length = 169243

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    atgttcttggttccttgattt 249
              |||||||||||||||||||||
Sbjct: 156440 atgttcttggttccttgattt 156460
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>ref|XM_515897.1| PREDICTED: Pan troglodytes similar to BC004636 protein (LOC459730),
            mRNA
          Length = 2003

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1332 tgttccttgatttttataagcatt 1355
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>ref|NM_024770.1| Homo sapiens methyltransferase like 8 (METTL8), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1576 tgttccttgatttttataagcatt 1599
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>gb|AC161284.2| Pan troglodytes BAC clone CH251-341A21 from chromosome 7, complete
            sequence
          Length = 153042

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  ttcttggttccttgatttca 251
            ||||||||||||||||||||
Sbjct: 7774 ttcttggttccttgatttca 7755
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>gb|AC147022.3| Pan troglodytes BAC clone RP43-86C7 from 7, complete sequence
          Length = 208912

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   ttcttggttccttgatttca 251
             ||||||||||||||||||||
Sbjct: 67147 ttcttggttccttgatttca 67166
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>gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, complete sequence
          Length = 240785

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   aatggggtgaggttctgttg 578
             ||||||||||||||||||||
Sbjct: 14358 aatggggtgaggttctgttg 14339
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>gb|AC002065.2| Homo sapiens BAC clone CTB-21N8 from 7, complete sequence
          Length = 117954

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  ttcttggttccttgatttca 251
            ||||||||||||||||||||
Sbjct: 4875 ttcttggttccttgatttca 4856
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>ref|XM_754890.1| Ustilago maydis 521 hypothetical protein (UM03836.1) partial mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 301 gtctcgctgggcctgatgatcttcaccacctg 332
           ||||| ||||||||||| ||||| ||||||||
Sbjct: 517 gtctcactgggcctgataatcttgaccacctg 486
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>gb|AC116709.4| Mus musculus chromosome 1, clone RP23-91L14, complete sequence
          Length = 188848

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   aatggggtgaggttctgttg 578
             ||||||||||||||||||||
Sbjct: 69804 aatggggtgaggttctgttg 69823
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>gb|AF192980.2| Trypanosoma cruzi flagellar calcium binding protein 3 mRNA,
           complete cds
          Length = 844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 ctgttgcacaaccaatatag 592
           ||||||||||||||||||||
Sbjct: 27  ctgttgcacaaccaatatag 8
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>dbj|AK124092.1| Homo sapiens cDNA FLJ42098 fis, clone TESOP2006041
          Length = 1922

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1788 tgttccttgatttttataagcatt 1811
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>dbj|AK093218.1| Homo sapiens cDNA FLJ35899 fis, clone TESTI2009544, moderately
            similar to Probable membrane protein YOR240w
          Length = 1880

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1746 tgttccttgatttttataagcatt 1769
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>emb|CR595622.1| full-length cDNA clone CS0DD006YH02 of Neuroblastoma Cot
            50-normalized of Homo sapiens (human)
          Length = 1606

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1488 tgttccttgatttttataagcatt 1511
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>dbj|AK024046.1| Homo sapiens cDNA FLJ13984 fis, clone Y79AA1001846
          Length = 2247

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  tgttccttgatatttataagcatt 495
            ||||||||||| ||||||||||||
Sbjct: 1576 tgttccttgatttttataagcatt 1599
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>gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, complete sequence
          Length = 179918

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     cttattaagaaatccactta 116
              ||||||||||||||||||||
Sbjct: 125967 cttattaagaaatccactta 125986
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>ref|XM_685585.1| PREDICTED: Danio rerio similar to MGC83846 protein (LOC562187), mRNA
          Length = 4376

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  agctgagtttcctttaaagt 407
            ||||||||||||||||||||
Sbjct: 3349 agctgagtttcctttaaagt 3330
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>emb|BX649437.8| Zebrafish DNA sequence from clone DKEY-28J9 in linkage group 16,
             complete sequence
          Length = 158346

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   agctgagtttcctttaaagt 407
             ||||||||||||||||||||
Sbjct: 91699 agctgagtttcctttaaagt 91718
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>emb|BX465198.11| Zebrafish DNA sequence from clone DKEYP-84E12 in linkage group 12,
              complete sequence
          Length = 194152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ctcaacacactagtttctgt 24
              ||||||||||||||||||||
Sbjct: 138148 ctcaacacactagtttctgt 138167
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 528      tggctccagttcttggagga 547
                ||||||||||||||||||||
Sbjct: 14093754 tggctccagttcttggagga 14093773
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>gb|AC007739.2| Homo sapiens BAC clone RP11-91L3 from 2, complete sequence
          Length = 159123

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 472   tgttccttgatatttataagcatt 495
             ||||||||||| ||||||||||||
Sbjct: 25039 tgttccttgatttttataagcatt 25062
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>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
              sequence
          Length = 250531

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tctgttctgtattgttctat 39
              ||||||||||||||||||||
Sbjct: 101287 tctgttctgtattgttctat 101306
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>dbj|AB154820.1| Cynops pyrrhogaster Sox1 mRNA for SOX1, complete cds
          Length = 2108

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 ttccttgatttcactttgtg 258
           ||||||||||||||||||||
Sbjct: 383 ttccttgatttcactttgtg 402
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 528      tggctccagttcttggagga 547
                ||||||||||||||||||||
Sbjct: 14048034 tggctccagttcttggagga 14048053
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>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150703

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   tggctccagttcttggagga 547
             ||||||||||||||||||||
Sbjct: 20295 tggctccagttcttggagga 20314
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>gb|L26971.1|TRBFCABP Trypanosoma cruzi calcium-binding protein mRNA, complete cds
          Length = 843

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 ctgttgcacaaccaatatag 592
           ||||||||||||||||||||
Sbjct: 34  ctgttgcacaaccaatatag 15
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>gb|M59961.1|PFABSA P.falciparum blood stage antigen (41-3) gene, complete cds
          Length = 3844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   tctgttctgtattgttctat 39
            ||||||||||||||||||||
Sbjct: 2131 tctgttctgtattgttctat 2112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,680,844
Number of Sequences: 3902068
Number of extensions: 4680844
Number of successful extensions: 81192
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81031
Number of HSP's gapped (non-prelim): 157
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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