ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26d14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475849.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 1562 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1503 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 1502 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 1444 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 1443 gatcttggactgtgagaactt 1423
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 3289 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 3230 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 3229 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 3171 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 3170 gatcttggactgtgagaactt 3150
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 78474 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 78415 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 78414 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 78356 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 78355 gatcttggactgtgagaactt 78335
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 102977 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 102918 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 102917 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 102859 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 102858 gatcttggactgtgagaactt 102838
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 27071893 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 27071834 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 27071833 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 27071775 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 27071774 gatcttggactgtgagaactt 27071754 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cagcagcagcaggaggacgagggc 255 ||||||||||||||||| |||||| Sbjct: 4882747 cagcagcagcaggaggaggagggc 4882724
>dbj|AK109478.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F04, full insert sequence Length = 1876 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 1612 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1553 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 1552 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 1494 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 1493 gatcttggactgtgagaactt 1473
>dbj|AK101669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D04, full insert sequence Length = 1938 Score = 176 bits (89), Expect = 4e-41 Identities = 130/141 (92%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 1661 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1602 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 |||||||| || || |||||||||||||||||||| |||||||| ||| || |||||||| Sbjct: 1601 ctgaccgggggattcgcatacttgcaggccatgtcttcgatcttgctg-tcatggtagtc 1543 Query: 383 gatcttggactgggagaactt 403 |||||||||||| |||||||| Sbjct: 1542 gatcttggactgtgagaactt 1522
>gb|AY112514.1| Zea mays CL891_1 mRNA sequence Length = 1846 Score = 163 bits (82), Expect = 6e-37 Identities = 144/162 (88%), Gaps = 2/162 (1%) Strand = Plus / Minus Query: 258 gctcaaagcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggcc 317 ||||| ||||| ||||||||||||||||| || || |||||||||||||| ||||||||| Sbjct: 1607 gctcagagcttgcccttgagcctcttcttcagcacatccatgacggcgccaaagtcggcc 1548 Query: 318 ttcacgctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtg 376 |||||||| || || ||||||| |||||||| ||||||||||||||||| ||| || || Sbjct: 1547 ttcacgctcacaggcgggttggagtacttgcaagccatgtcctcgatcttgctg-tcatg 1489 Query: 377 gtagtcgatcttggactgggagaacttgaggccgtgcgccgt 418 |||||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 1488 gtagtcgatcttcgactgcgagaacttgaggccgtgagccgt 1447
>gb|BT016678.1| Zea mays clone Contig511 mRNA sequence Length = 1283 Score = 151 bits (76), Expect = 2e-33 Identities = 138/156 (88%), Gaps = 2/156 (1%) Strand = Plus / Minus Query: 264 agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 323 ||||| ||||||||||||||||| || || |||||||||||||| ||||| ||||||||| Sbjct: 1023 agcttgcccttgagcctcttcttcagcacatccatgacggcgccaaagtcagccttcacg 964 Query: 324 ctgaccggagggttggcatacttgcaggccatgtcctcgatctt-ctgatcgtggtagtc 382 || || || ||||||| |||||||| ||||||||||||||||| ||| || |||||||| Sbjct: 963 ctcacaggcgggttggagtacttgcaagccatgtcctcgatcttgctg-tcatggtagtc 905 Query: 383 gatcttggactgggagaacttgaggccgtgcgccgt 418 |||||| ||||| ||||||||||||||||| ||||| Sbjct: 904 gatcttcgactgcgagaacttgaggccgtgagccgt 869
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 367 tctgatcgtggtagtcgatcttggactgggagaacttgaggccgtgcgc 415 |||| ||||||||| ||| |||| | | ||||||||||||||||||||| Sbjct: 1975015 tctggtcgtggtagccgaccttgaagtcggagaacttgaggccgtgcgc 1975063
>ref|NM_185677.1| Oryza sativa (japonica cultivar-group), Ozsa8028 predicted mRNA Length = 4848 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 ggtcagcagcagcaggaggacgaggg 254 |||||||||||||||||||| ||||| Sbjct: 118 ggtcagcagcagcaggaggaggaggg 143
>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence Length = 195273 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gaggggtcagcagcagcaggag 246 |||||||||||||||||||||| Sbjct: 128709 gaggggtcagcagcagcaggag 128688
>emb|CR456637.3| Platypus DNA sequence from clone XX-104A18, complete sequence Length = 110477 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 25235 cagcagcagcaggaggacgagg 25256
>emb|CR388525.1| Gallus gallus finished cDNA, clone ChEST1020i2 Length = 787 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 186 cagcagcagcaggaggacgagg 207
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 18376021 cagcagcagcaggaggacgagg 18376042
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 ggtcagcagcagcaggaggacgaggg 254 |||||||||||||||||||| ||||| Sbjct: 3762107 ggtcagcagcagcaggaggaggaggg 3762132
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 ggtcagcagcagcaggaggacgaggg 254 |||||||||||||||||||| ||||| Sbjct: 156335 ggtcagcagcagcaggaggaggaggg 156360
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 ggtcagcagcagcaggaggacgaggg 254 |||||||||||||||||||| ||||| Sbjct: 20061 ggtcagcagcagcaggaggaggaggg 20086
>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence Length = 1843 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 212 cagcagcagcaggaggacgagg 233
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 18302247 cagcagcagcaggaggacgagg 18302268
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagg 253 |||||||||||||||||||||| Sbjct: 27920 cagcagcagcaggaggacgagg 27941
>gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complete sequence Length = 198967 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcagcaggaggacgagggcat 257 ||||||||||||||||||||| Sbjct: 75961 gcagcaggaggacgagggcat 75941
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cgccgaagtcggccttcacgc 324 ||||||||||||||||||||| Sbjct: 3194661 cgccgaagtcggccttcacgc 3194681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 32606332 cagcagcagcaggaggacga 32606351
>ref|XM_546389.2| PREDICTED: Canis familiaris similar to junctional adhesion molecule 3 precursor (LOC489271), mRNA Length = 2389 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 agcagcagcaggaggacgagg 253 ||||||||||||||||||||| Sbjct: 1103 agcagcagcaggaggacgagg 1083
>ref|NM_206750.1| Drosophila melanogaster CG15603-PA (CG15603) mRNA, complete cds Length = 1020 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 gcagcaggaggacgagggcat 257 ||||||||||||||||||||| Sbjct: 215 gcagcaggaggacgagggcat 235
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cgccgaagtcggccttcacgc 324 ||||||||||||||||||||| Sbjct: 3194772 cgccgaagtcggccttcacgc 3194792 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 32696842 cagcagcagcaggaggacga 32696861
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cgccgaagtcggccttcacgc 324 ||||||||||||||||||||| Sbjct: 19534 cgccgaagtcggccttcacgc 19554
>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete sequence Length = 303344 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcagcaggaggacgagggcat 257 ||||||||||||||||||||| Sbjct: 243875 gcagcaggaggacgagggcat 243855
>ref|XM_469941.1| Oryza sativa (japonica cultivar-group), mRNA Length = 591 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 277 cagcagcagcaggaggacga 296
>ref|XM_468423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 520 cagcagcagcaggaggacga 539
>ref|XM_465863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggtcagcagcagcaggagga 248 |||||||||||||||||||| Sbjct: 60 ggtcagcagcagcaggagga 41
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 137575 cagcagcagcaggaggacga 137556
>ref|XM_532613.2| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 1 (LOC475389), mRNA Length = 6197 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ctgggagaacttgaggccgt 411 |||||||||||||||||||| Sbjct: 4059 ctgggagaacttgaggccgt 4040
>ref|XM_857945.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 6 (LOC475389), mRNA Length = 4908 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ctgggagaacttgaggccgt 411 |||||||||||||||||||| Sbjct: 2770 ctgggagaacttgaggccgt 2751
>ref|XM_857919.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 5 (LOC475389), mRNA Length = 4506 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ctgggagaacttgaggccgt 411 |||||||||||||||||||| Sbjct: 2395 ctgggagaacttgaggccgt 2376
>ref|XM_857873.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 3 (LOC475389), mRNA Length = 6170 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ctgggagaacttgaggccgt 411 |||||||||||||||||||| Sbjct: 4032 ctgggagaacttgaggccgt 4013
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcagcagcagcaggaggacg 250 |||||||||||||||||||| Sbjct: 20905 tcagcagcagcaggaggacg 20886
>emb|CR682616.2|CNS0FPNO Tetraodon nigroviridis full-length cDNA Length = 1099 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tcagcagcagcaggaggacgaggg 254 |||||||||||||||||| ||||| Sbjct: 726 tcagcagcagcaggaggaggaggg 749
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcagcagcagcaggaggacg 250 |||||||||||||||||||| Sbjct: 53443 tcagcagcagcaggaggacg 53424
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 35152270 cagcagcagcaggaggacga 35152289 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggtcagcagcagcaggagga 248 |||||||||||||||||||| Sbjct: 17962036 ggtcagcagcagcaggagga 17962017
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcagcagcagcaggaggacg 250 |||||||||||||||||||| Sbjct: 8056792 tcagcagcagcaggaggacg 8056773
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 cttgaggacgtccatgacggcgcc 307 ||||||||||||||||||| |||| Sbjct: 6806910 cttgaggacgtccatgacgacgcc 6806887 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 agcagcaggaggacgagggc 255 |||||||||||||||||||| Sbjct: 3858848 agcagcaggaggacgagggc 3858829
>ref|XM_341579.2| PREDICTED: Rattus norvegicus Niemann-Pick disease, type C1 (predicted) (Npc1_predicted), mRNA Length = 3850 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cagcagcagcaggaggacgagggc 255 |||||||||||||||| ||||||| Sbjct: 55 cagcagcagcaggaggccgagggc 32
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacga 251 |||||||||||||||||||| Sbjct: 47626 cagcagcagcaggaggacga 47645
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggtcagcagcagcaggagga 248 |||||||||||||||||||| Sbjct: 96669 ggtcagcagcagcaggagga 96650
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggtcagcagcagcaggagga 248 |||||||||||||||||||| Sbjct: 23630 ggtcagcagcagcaggagga 23611
>dbj|AK106020.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C01, full insert sequence Length = 1450 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagggc 255 ||||||||||||||||| |||||| Sbjct: 452 cagcagcagcaggaggaggagggc 475
>dbj|AK071095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079N14, full insert sequence Length = 1460 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 cagcagcagcaggaggacgagggc 255 ||||||||||||||||| |||||| Sbjct: 462 cagcagcagcaggaggaggagggc 485
>gb|AF118825.1|AF118825 Ilyanassa obsoleta myosin II heavy chain mRNA, partial cds Length = 1620 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggccatgtcctcgatcttct 369 |||||||||||||||||||| Sbjct: 432 ggccatgtcctcgatcttct 413
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gagaacttgaggccgtgcgc 415 |||||||||||||||||||| Sbjct: 1901124 gagaacttgaggccgtgcgc 1901143
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cagcagcagcaggaggacgagggc 255 ||||||||||||||||| |||||| Sbjct: 155155 cagcagcagcaggaggaggagggc 155132 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,678,749 Number of Sequences: 3902068 Number of extensions: 3678749 Number of successful extensions: 71928 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71376 Number of HSP's gapped (non-prelim): 542 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
