ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26d13 |
|---|---|
| Clone Library Name | barley_pub |
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Frame = +3 Query: 87 ENDNLPTRLH---QHPSQMETGPTPKTARPFVPPQNNQSPIFFLLYGLCTRDEEAGTRQA 257 +N+ P+R H Q P M+ GP P P PPQ+ + R EEAG A Sbjct: 2001 KNEQTPSRFHFQGQAPQVMKPGPRPLLELPSHPPQHRKD-----------RWEEAGPPSA 2049 Query: 258 SS 263 S Sbjct: 2050 LS 2051
>DPOLL_MACFA (Q4R380) DNA polymerase lambda (EC 2.7.7.7) (EC 4.2.99.-) (Pol| Lambda) Length = 575 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 54 HISATWPSTGHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQ 191 ++ + PS ++ +LP H+ Q P P RP PPQ + Sbjct: 138 YLDQSQPSKAEQDASLPPGTHEALLQTALPPPPSPTRPVSPPQKTK 183
>RPF1_YEAST (P38805) Ribosome production factor 1 (Ribosome biogenesis protein| RPF1) Length = 295 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +1 Query: 148 RQKRRGRSFLRRITNPPFFFCYMVYVHVMKKPAHGRPXXXXXXXXXNN 291 ++K G +F+ P F+F +V V K HGRP NN Sbjct: 154 KKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNN 201
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = +3 Query: 75 STGHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQSP 197 S GH N + P H H P P +P PPQ Q P Sbjct: 36 SHGHHNSHHPQH-HHHHHHHHHHPPPPAPQPPPPPQQQQPP 75
>ERN2_HUMAN (Q76MJ5) Serine/threonine-protein kinase/endoribonuclease IRE2| precursor (Inositol-requiring protein 2) (hIRE2p) (IRE1b) (Ire1-beta) (Endoplasmic reticulum-to-nucleus signaling 2) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endor Length = 925 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 57 ISATWPSTGHENDNLPTRLHQHPSQMETGPTPKTARPFV-PPQNNQSPIFFL 209 + + W GH LP LH + + PTP + PP+N Q+P FFL Sbjct: 353 LPSQWLLIGHHE--LPPVLHT--TMLRVHPTPGSGTAETRPPENTQAPAFFL 400
>IMA4_MOUSE (O35343) Importin alpha-4 subunit (Karyopherin alpha-4 subunit)| (Importin alpha Q1) Length = 521 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 255 PAVCRLLHHVYINHIAEKKWGIGY 184 PA+C L+HH +N + + W + Y Sbjct: 245 PALCVLIHHTDVNILVDTVWALSY 268
>IMA4_HUMAN (O00629) Importin alpha-4 subunit (Karyopherin alpha-4 subunit)| (Qip1 protein) Length = 521 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 255 PAVCRLLHHVYINHIAEKKWGIGY 184 PA+C L+HH +N + + W + Y Sbjct: 245 PALCVLIHHTDVNILVDTVWALSY 268
>WRK11_ARATH (Q9SV15) Probable WRKY transcription factor 11 (WRKY DNA-binding| protein 11) Length = 325 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -1 Query: 295 CHC*RGRRKR*EEACRVPASSSRV----HKPYSRKKMGDWLFCGGTNGRAVF 152 CHC + R+ R + RVPA S+++ YS +K G G + R + Sbjct: 218 CHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYY 269
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = +3 Query: 81 GHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQSP 197 GH + H H QM+ P P +P PPQ P Sbjct: 730 GHTGRDQKKHHHHHHPQMQPAPAPVPQQPPPPPQQPPPP 768
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = +3 Query: 81 GHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQSP 197 GH H H QM+ P P +P PPQ P Sbjct: 729 GHPGREQKKHHHHHHQQMQQAPAPVPQQPPPPPQQPPPP 767
>WRK17_ARATH (Q9SJA8) Probable WRKY transcription factor 17 (WRKY DNA-binding| protein 17) Length = 321 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -1 Query: 295 CHC*RGRRKR*EEACRVPASSSRV----HKPYSRKKMGDWLFCGGTNGRAVF 152 CHC + R+ R + RVPA S+++ YS +K G G + R + Sbjct: 215 CHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYY 266
>KIT_CAPHI (Q28317) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 978 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 193 DWLFCGGTNGRAVFGVGPVSI 131 DW FC GT R VGPV + Sbjct: 440 DWYFCPGTEQRCSVPVGPVDV 460
>KIT_BOVIN (P43481) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 977 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 193 DWLFCGGTNGRAVFGVGPVSI 131 DW FC GT R VGPV + Sbjct: 440 DWYFCPGTEQRCSVPVGPVDV 460
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/41 (36%), Positives = 16/41 (39%) Frame = +3 Query: 75 STGHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQSP 197 S GH N + P H H P P P PPQ Q P Sbjct: 36 SHGHHNSHHPQH-HHHHHHHHHPPPPAPQPPPPPPQQQQQP 75
>Y1226_METJA (Q58623) Putative cation-transporting ATPase MJ1226 (EC 3.6.3.-)| Length = 805 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/58 (29%), Positives = 23/58 (39%) Frame = -1 Query: 349 NDSRFSEKNKAPDIFLDACHC*RGRRKR*EEACRVPASSSRVHKPYSRKKMGDWLFCG 176 ND F AP + LD C+ R++ EE A + + K G W F G Sbjct: 394 NDEEFKVSKGAPQVILDLCNADEELRRKVEEIVDKLAENGYRALGVAVYKNGRWHFAG 451
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1734 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 72 PSTGHENDNLPTRLHQHPSQMETGPTPKTARP 167 P +GH + + PT+LH P PK+A P Sbjct: 1303 PLSGHGSQSFPTKLHLSPPLGRQLSRPKSAEP 1334
>DPOLL_HUMAN (Q9UGP5) DNA polymerase lambda (EC 2.7.7.7) (EC 4.2.99.-) (Pol| Lambda) (DNA polymerase kappa) (DNA polymerase beta-2) (Pol beta2) Length = 575 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = +3 Query: 72 PSTGHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQ 182 PS ++ ++P H+ Q P P RP PPQ Sbjct: 144 PSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQ 180
>NMBR_MOUSE (O54799) Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring| bombesin receptor) Length = 390 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 36 VSMYMYHISATWPSTGHENDNLPTRLHQH-PSQMET 140 +S+Y YHI+ T + H NLP ++H QMET Sbjct: 228 ISIYYYHIAKTLIKSAH---NLPGEYNEHTKKQMET 260
>NMBR_HUMAN (P28336) Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring| bombesin receptor) Length = 390 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 36 VSMYMYHISATWPSTGHENDNLPTRLHQH-PSQMET 140 +S+Y YHI+ T + H NLP ++H QMET Sbjct: 228 ISIYYYHIAKTLIKSAH---NLPGEYNEHTKKQMET 260
>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding| protein 7) Length = 353 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = -1 Query: 295 CHC*RGRRKR*EEACRVPASSSRV----HKPYSRKKMGDWLFCGGTNGRAVFGVGPVSI* 128 CHC + R+ R + RVPA SS++ +S +K G G + R + V Sbjct: 253 CHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSV--- 309 Query: 127 EGC 119 GC Sbjct: 310 RGC 312
>IMA3_MOUSE (O35344) Importin alpha-3 subunit (Karyopherin alpha-3 subunit)| (Importin alpha Q2) Length = 521 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 255 PAVCRLLHHVYINHIAEKKWGIGYSAE--ERTAAPFLASGQFPF 130 PA+C L++H IN + + W + Y + + SG PF Sbjct: 245 PALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPF 288
>IMA3_HUMAN (O00505) Importin alpha-3 subunit (Karyopherin alpha-3 subunit)| (SRP1-gamma) Length = 521 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 255 PAVCRLLHHVYINHIAEKKWGIGYSAE--ERTAAPFLASGQFPF 130 PA+C L++H IN + + W + Y + + SG PF Sbjct: 245 PALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPF 288
>TBX20_HUMAN (Q9UMR3) T-box transcription factor TBX20 (T-box protein 20)| (Fragment) Length = 251 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 45 YMYHISATWPSTGHENDNLPTRLHQHPSQMETG 143 Y YH S+ W G + LP RL+ HP TG Sbjct: 117 YAYHRSS-WLVAGKADPPLPARLYVHPDSPFTG 148
>TBX20_MOUSE (Q9ES03) T-box transcription factor TBX20 (T-box protein 20)| Length = 297 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 45 YMYHISATWPSTGHENDNLPTRLHQHPSQMETG 143 Y YH S+ W G + LP RL+ HP TG Sbjct: 161 YAYHRSS-WLVAGKADPPLPARLYVHPDSPFTG 192
>DSBE_PSEFL (P52237) Thiol:disulfide interchange protein dsbE (Cytochrome c| biogenesis protein ccmG) Length = 178 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -2 Query: 246 CRLLHHVYINHIAEKK---WGIGYSAEERTAAPFLASGQFPFEKDV 118 CR+ H V +N +AEK +GI Y + A +LA P++ D+ Sbjct: 76 CRVEHPV-LNKLAEKGVVIYGINYKDDNAAALKWLAEFHNPYQLDI 120
>DNLJ_MYCGE (P47496) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 659 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 15 EQXKERNVSMYMYHISATWPSTGHENDNLPTRLHQH 122 E KERN+ + Y +S T N N T+L++H Sbjct: 419 ETCKERNIQLINYFVSKTAMDINGLNINTITKLYEH 454
>NMBR_RAT (P24053) Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring| bombesin receptor) Length = 390 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 36 VSMYMYHISATWPSTGHENDNLPTRLHQH-PSQMET 140 +S+Y YHI+ T + H NLP ++H QMET Sbjct: 228 ISIYYYHIAKTLIRSAH---NLPGEYNEHTKKQMET 260
>YBV8_YEAST (P38266) Protein YBR108W| Length = 947 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 123 PSQMETGPTPKTARPFVPPQNNQSP 197 PS+ T P+ A P +PP+NN P Sbjct: 532 PSEHTTKNAPERAVPILPPRNNVEP 556
>WRK21_ARATH (O04336) Probable WRKY transcription factor 21 (WRKY DNA-binding| protein 21) Length = 380 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = -1 Query: 295 CHC*RGRRKR*EEACRVPASSSRV----HKPYSRKKMG 194 CHC + R+ R + RVPA S++V YS +K G Sbjct: 285 CHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYG 322
>MKS1_YEAST (P34072) Negative regulator of RAS-cAMP pathway| Length = 584 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = +3 Query: 57 ISATWPSTGHENDNLPTRLHQHPSQMETGPTPKTARPFVPPQNNQSP 197 +S + S + N N H + PTP+++ + PQ Q+P Sbjct: 371 LSGLFLSEANSNSNNHNTAHSEYASKHVSPTPQSSHSNIGPQPQQNP 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,098,694 Number of Sequences: 219361 Number of extensions: 1297314 Number of successful extensions: 3513 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3510 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
