>OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Solute carrier|
           family 22 member 21) (Solute carrier family 22 member 9)
          Length = 564

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 548 FRRLASYAGFYSFTTLVTYAYTSNT---TRAGISRADQYYAAYPSGTELLTDTAKLYKAA 378
           F  +A + GF SF  + +  +   T   T  G+     Y AA+  GTE+L+ + ++  A 
Sbjct: 174 FLTMAMHTGF-SFIQVFSVNFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFAT 232

Query: 377 LGNC 366
           LG C
Sbjct: 233 LGVC 236

>CYB_SIGHI (Q9XNU6) Cytochrome b|
          Length = 381

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIM 437
           LGG L ++ SI  L + P+L  + +QGLVFR +  I+
Sbjct: 288 LGGVLALILSILILAAFPLLNSSKQQGLVFRPITQIL 324

>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear|
            DNA helicase II) (NDH II)
          Length = 1301

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/59 (37%), Positives = 24/59 (40%)
 Frame = -2

Query: 461  ISRADQYYAAYPSGTELLTDTAKLYKAALGNCFEIDDWGPIEFSIMAKHFDRQGKPPYA 285
            IS  +    A P    LLTD A + K    N  E  DWGP   S     F  Q  PP A
Sbjct: 1154 ISSEEFMSEAGPIKDSLLTDNALIQKGPAPNRLEYADWGP---SNNNSSFQNQDFPPAA 1209

>ANI1_CAEEL (Q9XTT4) Anillin-like protein 1|
          Length = 1159

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -2

Query: 515 SFTTLVTYAYTSNTTRAGISRADQYYAAYPSGTELLTDTAKLYKAALGNCFEIDDWGPIE 336
           S TTL T +  S +T +GIS A Q  A+  + T   T +  L K +  N   +    P  
Sbjct: 296 STTTLTTISGASGSTTSGISNAPQDSASTKTTTNTFTSSYLLTKTSNNNINALVSSSPKP 355

Query: 335 FS 330
           FS
Sbjct: 356 FS 357

>TMLH_NEUCR (Q96UB1) Trimethyllysine dioxygenase (EC 1.14.11.8)|
           (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase)
           (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase)
           (TML dioxygenase) (TMLD)
          Length = 471

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 572 KDVLKIQKFRRLASYAGFYSFTTLVTYAYTSNTTRAGISRADQYYAAYPSGTE 414
           + +L+   F R+  Y GFY FT  +  A T+ T  A  +  D  Y   P+G +
Sbjct: 212 RQLLERIAFIRVTHYGGFYDFTPDLAMADTAYTNLALPAHTDTTYFTDPAGLQ 264

>CYB_AKOAE (P48517) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLT 401
           LGG L ++ SI  L + P+L  + + GL+FR +   +  TL+V    LT
Sbjct: 288 LGGVLALILSILILAAFPLLNTSKQHGLIFRPITQTIYWTLIVNLLVLT 336

>CYB_NEORH (Q8HLB9) Cytochrome b|
          Length = 380

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 422
           LGG L +L SI  L  +P+L  + ++GL+FR L  I+  TL+
Sbjct: 288 LGGVLALLASILILMVVPLLHTSKQRGLMFRPLTQILFWTLV 329

>CYB_ALLNG (Q8HLD2) Cytochrome b|
          Length = 380

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 422
           LGG L +L SI  L  +P+L  + ++GL+FR L  I+  TL+
Sbjct: 288 LGGVLALLASILILMVVPLLHTSKQRGLMFRPLTQILFWTLV 329

>CYB_CLAFC (Q8SGQ9) Cytochrome b|
          Length = 392

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 422
           LGG L +L SI  L  +P+L  + +QGL FR L  I+  TL+
Sbjct: 288 LGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWTLV 329

>CYB_ANOCO (Q8HLR2) Cytochrome b|
          Length = 384

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 422
           LGG L +L SI  L  +P+L  ++++GL FR L  ++  TL+
Sbjct: 288 LGGVLALLFSILVLMVVPILHTSVQRGLTFRPLSQMLFWTLV 329

>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8|
          Length = 2413

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -3

Query: 556  FRSLGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLTLQSFTRPH 377
            F     WL  + S  +   L +L +A++       +I +  PT+ + SY L   SFT   
Sbjct: 1989 FNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHL-WPSFTDEQ 2047

Query: 376  WVIV 365
            W+ +
Sbjct: 2048 WITI 2051

>CYB_MIRCO (Q34972) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLT 401
           LGG L ++ SI  L  LP+L    ++ +VFR    IM  TL    ++LT
Sbjct: 288 LGGVLALIMSILILAILPLLQTTKQRSMVFRPFSQIMFWTLTADLFTLT 336

>CYB_AKOTB (Q33887) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLIS----IMPPTLLVLSY 410
           LGG L +L SI  L + P+L  + + GL+FR +      I+   LLVL++
Sbjct: 288 LGGVLALLLSILILMAFPLLNTSKQHGLIFRPITQTIYWILIANLLVLTW 337

>CYB_AKODA (Q5QFW6) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -3

Query: 547 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLIS----IMPPTLLVLSY 410
           LGG L +L SI  L + P+L  + + GL+FR +      I+   LLVL++
Sbjct: 288 LGGVLALLLSILILMAFPLLNTSKQHGLIFRPITQIIYWILIANLLVLTW 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,716,763
Number of Sequences: 219361
Number of extensions: 1661166
Number of successful extensions: 4671
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4671
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)