ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
2dbj|AK100857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
3emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
4ref|NM_129003.3| Arabidopsis thaliana unknown protein AT2G34510 ... 40 5.6
5gb|AC000057.1| Homo sapiens BAC clone CTB-67M9 from 7, complete ... 40 5.6
6gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 ma... 40 5.6
7gb|AF325081.1|AF325081 Arabidopsis thaliana unknown protein (At2... 40 5.6
8emb|BX820463.1|CNS0A9JU Arabidopsis thaliana Full-length cDNA Co... 40 5.6
9emb|BX819750.1|CNS0A9H2 Arabidopsis thaliana Full-length cDNA Co... 40 5.6

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 148      actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 196
                |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 21696272 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 21696224



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>dbj|AK100857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123M01, full
            insert sequence
          Length = 2021

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 148  actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 196
            |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 1827 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 1779



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>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
            complete sequence
          Length = 141915

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 148  actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 196
            |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 7889 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 7841



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>ref|NM_129003.3| Arabidopsis thaliana unknown protein AT2G34510 mRNA, complete cds
          Length = 1398

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   gaagctaccgaaacattcag 27
           ||||||||||||||||||||
Sbjct: 494 gaagctaccgaaacattcag 475



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>gb|AC000057.1| Homo sapiens BAC clone CTB-67M9 from 7, complete sequence
          Length = 78631

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   ttcctctcctggaaagtactttgg 154
             ||||||||||||||||| ||||||
Sbjct: 58058 ttcctctcctggaaagtgctttgg 58081



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>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete
             sequence
          Length = 93060

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gaagctaccgaaacattcag 27
             ||||||||||||||||||||
Sbjct: 58715 gaagctaccgaaacattcag 58696



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>gb|AF325081.1|AF325081 Arabidopsis thaliana unknown protein (At2g34510) mRNA, complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   gaagctaccgaaacattcag 27
           ||||||||||||||||||||
Sbjct: 419 gaagctaccgaaacattcag 400



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>emb|BX820463.1|CNS0A9JU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH37ZC06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 896

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   gaagctaccgaaacattcag 27
           ||||||||||||||||||||
Sbjct: 419 gaagctaccgaaacattcag 400



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>emb|BX819750.1|CNS0A9H2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS22ZC04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1393

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   gaagctaccgaaacattcag 27
           ||||||||||||||||||||
Sbjct: 493 gaagctaccgaaacattcag 474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,430,058
Number of Sequences: 3902068
Number of extensions: 2430058
Number of successful extensions: 42453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42425
Number of HSP's gapped (non-prelim): 28
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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