ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105047.1| Zea mays PCO111184 mRNA sequence 436 e-119
2dbj|AK070095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 5e-97
3ref|XM_480012.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-18
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 4e-17
5gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
9dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
10dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
11dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
12dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
13dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
14ref|NM_129622.2| Arabidopsis thaliana unknown protein AT2G40600 ... 58 4e-05
15gb|BT000897.1| Arabidopsis thaliana clone C104910 unknown protei... 58 4e-05
16gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map ... 58 4e-05
17gb|AY050972.1| Arabidopsis thaliana unknown protein (At2g40600) ... 50 0.009
18gb|L47610.1|PIAEMB4R Picea glauca EMB4 mRNA 46 0.14
19gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.56
20ref|XM_429829.1| PREDICTED: Gallus gallus LOC421259 (LOC421259),... 42 2.2
21ref|XM_749146.1| Aspergillus fumigatus Af293 hypothetical protei... 42 2.2
22gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, c... 42 2.2
23dbj|AK123792.1| Homo sapiens cDNA FLJ41798 fis, clone NHNPC2001223 42 2.2
24gb|AC005317.2| Homo sapiens chromosome 15q26.1 clone PAC pDJ457j... 42 2.2
25ref|XM_392131.2| PREDICTED: Apis mellifera similar to MGC68697 p... 42 2.2
26ref|XM_623178.1| PREDICTED: Apis mellifera similar to MGC68697 p... 42 2.2
27gb|AC005316.1|AC005316 Human Chromosome 15q26.1 PAC clone pDJ10k... 42 2.2
28gb|AC133637.2| Homo sapiens chromosome 15, clone CTD-2335A18, co... 42 2.2
29gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome... 40 8.8
30gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosom... 40 8.8
31gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome... 40 8.8
32gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome... 40 8.8
33emb|AL645767.6| Human DNA sequence from clone RP11-318C15 on chr... 40 8.8
34emb|AL513024.9| Human DNA sequence from clone RP11-555B19 on chr... 40 8.8
35emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromo... 40 8.8
36gb|AC160650.2| Pan troglodytes BAC clone CH251-548K10 from chrom... 40 8.8
37dbj|AK141626.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 8.8
38gb|AC155635.3| Mus musculus BAC clone RP24-252C1 from chromosome... 40 8.8
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
40gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 8.8
41dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
42emb|BX927255.9| Zebrafish DNA sequence from clone CH211-266I18 i... 40 8.8
43emb|BX537272.5| Zebrafish DNA sequence from clone DKEY-25E12 in ... 40 8.8
44gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, comp... 40 8.8
45gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.8 
>gb|AY105047.1| Zea mays PCO111184 mRNA sequence
          Length = 919

 Score =  436 bits (220), Expect = e-119
 Identities = 409/472 (86%)
 Strand = Plus / Minus

                                                                       
Query: 171 ctgggcagtctcacgccaaatgctgtacagatcatccgagaacagaacaaaatgcacctc 230
           |||||||||||| ||||| ||  |||| || || ||||||||||||||||||||||||||
Sbjct: 701 ctgggcagtctcgcgccatatattgtaaaggtcgtccgagaacagaacaaaatgcacctc 642

                                                                       
Query: 231 tttaatatcgcctgaaaattgttgagcagctgaaatagctatgtttgatgcttcctttgg 290
           ||| |||||  ||||||||| ||| || |  |||| |||||| |||||||||||||| ||
Sbjct: 641 tttgatatcctctgaaaatttttgtgcggtagaaacagctatttttgatgcttccttggg 582

                                                                       
Query: 291 agggtaacgaaaaataccacaagatatagcagggaatgcaatgtactgaatgccattctc 350
           ||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 581 aggataacgataaacaccacaagatatagcagggaatgcgatgtactgaatgccattatc 522

                                                                       
Query: 351 tttagccagctttaagctattttcgtatgcattctttaatgacacctcaggcttcctgtc 410
            ||||| ||||| ||||||||||| || || |||||||||||||||||||| | | ||||
Sbjct: 521 cttagcaagcttcaagctattttcataggccttctttaatgacacctcaggatgcttgtc 462

                                                                       
Query: 411 catatcatatatgggcccaactgtatggatcacacgggacacgggaagctcaaaagctgg 470
           || ||||||||| || ||||| || || ||||| || ||  | |||||||||||||| ||
Sbjct: 461 caaatcatatatagggccaacagtgtgaatcacccgagaggcaggaagctcaaaagcagg 402

                                                                       
Query: 471 agtaattctagcttctccagtagggcaacggactccaggtttaacctctggaactttacg 530
           |||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 401 agtaatcctagcttctccagtaggacaacggactcctggtttgacctctggaactttccg 342

                                                                       
Query: 531 acatgcttctacaagttgtggcccagcagcttgatgtatagctccatcaacacctccccc 590
            |||||||  || || | ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 341 gcatgcttgcactagctctggtccagcagcttgatgtatagctccatcaacacctccgcc 282

                                                               
Query: 591 tccaagcattcgttcattagcagcattgacgatggcgtcggtggcgccgtcg 642
            || | |||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct: 281 acctaacattcgctcattagcagcattaacgatggcgtcggtggcgcagtcg 230
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>dbj|AK070095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J09, full
           insert sequence
          Length = 957

 Score =  363 bits (183), Expect = 5e-97
 Identities = 420/499 (84%)
 Strand = Plus / Minus

                                                                       
Query: 144 tcatttctcaaattgcatcagcatctcctgggcagtctcacgccaaatgctgtacagatc 203
           |||||||||||||||   ||| |  |||| ||||||||||||||| ||    || || ||
Sbjct: 709 tcatttctcaaattgtgacagaaattccttggcagtctcacgccagatatcatagagctc 650

                                                                       
Query: 204 atccgagaacagaacaaaatgcacctctttaatatcgcctgaaaattgttgagcagctga 263
           ||| || ||||||||||| || ||||||||||||||    |||||| |||| ||||  ||
Sbjct: 649 atcagaaaacagaacaaagtgtacctctttaatatcattagaaaatcgttgtgcagtaga 590

                                                                       
Query: 264 aatagctatgtttgatgcttcctttggagggtaacgaaaaataccacaagatatagcagg 323
           || ||| || || ||||||||||||||||| |||||| ||| ||||||||| || |||||
Sbjct: 589 aacagcaatcttcgatgcttcctttggaggataacgataaacaccacaagaaattgcagg 530

                                                                       
Query: 324 gaatgcaatgtactgaatgccattctctttagccagctttaagctattttcgtatgcatt 383
            ||||||||||| ||||| ||||||| |||||| ||||| |||||||||  ||| |||||
Sbjct: 529 taatgcaatgtattgaataccattctgtttagcgagcttcaagctatttgtgtaggcatt 470

                                                                       
Query: 384 ctttaatgacacctcaggcttcctgtccatatcatatatgggcccaactgtatggatcac 443
            ||||| || |||||||| | | ||||||||||||||||||||||||| || || |||||
Sbjct: 469 atttaaggagacctcaggttgcttgtccatatcatatatgggcccaacagtgtgtatcac 410

                                                                       
Query: 444 acgggacacgggaagctcaaaagctggagtaattctagcttctccagtagggcaacggac 503
            ||||| || |||||||  || ||||||||||| |||||||||||||| ||||| || ||
Sbjct: 409 gcgggaaacaggaagcttgaatgctggagtaatcctagcttctccagtggggcagcgaac 350

                                                                       
Query: 504 tccaggtttaacctctggaactttacgacatgcttctacaagttgtggcccagcagcttg 563
           ||||| ||| ||||||||||||||||| ||||| ||||| ||||  || ||||||| | |
Sbjct: 349 tccagatttgacctctggaactttacggcatgcctctacgagttcaggtccagcagttcg 290

                                                                       
Query: 564 atgtatagctccatcaacacctccccctccaagcattcgttcattagcagcattgacgat 623
           | ||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct: 289 acgtatagctccatctacacctccacctcctagcattcgctcattagcagcattaacgat 230

                              
Query: 624 ggcgtcggtggcgccgtcg 642
           |||||||||||||||||||
Sbjct: 229 ggcgtcggtggcgccgtcg 211
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>ref|XM_480012.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                       
Query: 572 ctccatcaacacctccccctccaagcattcgttcattagcagcattgacgatggcgtcgg 631
           |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| | |
Sbjct: 355 ctccatcaacacctccacctcctagcattcgttcattagcagcattaacgatggcgacag 296

                      
Query: 632 tggcgccgtcg 642
           |||||||||||
Sbjct: 295 tggcgccgtcg 285
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                            
Query: 469      ggagtaattctagcttctccagtagggcaacggactccaggtttaacctctggaacttta 528
                |||||||| |||||||||||||| ||||| || ||||||| ||| |||||||||||||||
Sbjct: 12453520 ggagtaatcctagcttctccagtggggcagcgaactccagatttgacctctggaacttta 12453461

                                                             
Query: 529      cgacatgcttctacaagttgtggcccagcagcttgatgtatagct 573
                || ||||| ||||| ||||  || ||||||| | |||||||||||
Sbjct: 12453460 cggcatgcctctacgagttcaggtccagcagttcgatgtatagct 12453416



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                            
Query: 306      accacaagatatagcagggaatgcaatgtactgaatgccattctctttagccagctttaa 365
                ||||||||| || ||||| ||||||||||| ||||| ||||||| |||||| ||||| ||
Sbjct: 12453883 accacaagaaattgcaggtaatgcaatgtattgaataccattctgtttagcgagcttcaa 12453824

                       
Query: 366      gctattt 372
                |||||||
Sbjct: 12453823 gctattt 12453817



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                            
Query: 379      gcattctttaatgacacctcaggcttcctgtccatatcatatatgggcccaactgtatgg 438
                ||||| ||||| || |||||||| | | ||||||||||||||||||||||||| || || 
Sbjct: 12453712 gcattatttaaggagacctcaggttgcttgtccatatcatatatgggcccaacagtgtgt 12453653

                                      
Query: 439      atcacacgggacacgggaagct 460
                ||||| ||||| || |||||||
Sbjct: 12453652 atcacgcgggaaacaggaagct 12453631



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 572      ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
                ||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 12453333 ctccatctacacctccacctcctagcattcgctcattagcagcatt 12453288



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 619      acgatggcgtcggtggcgccgtcg 642
                ||||||||||||||||||||||||
Sbjct: 12452710 acgatggcgtcggtggcgccgtcg 12452687



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                            
Query: 226      acctctttaatatcgcctgaaaattgttgagcagctgaaatagctatgtttgatgcttcc 285
                ||||||||||||||    |||||| |||| ||||  |||| ||| || || |||||||||
Sbjct: 12454062 acctctttaatatcattagaaaatcgttgtgcagtagaaacagcaatcttcgatgcttcc 12454003

                             
Query: 286      tttggagggtaac 298
                |||||||| ||||
Sbjct: 12454002 tttggaggataac 12453990
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                          
Query: 469    ggagtaattctagcttctccagtagggcaacggactccaggtttaacctctggaacttta 528
              |||||||| |||||||||||||| ||||| || ||||||| ||| |||||||||||||||
Sbjct: 111202 ggagtaatcctagcttctccagtggggcagcgaactccagatttgacctctggaacttta 111143

                                                           
Query: 529    cgacatgcttctacaagttgtggcccagcagcttgatgtatagct 573
              || ||||| ||||| ||||  || ||||||| | |||||||||||
Sbjct: 111142 cggcatgcctctacgagttcaggtccagcagttcgatgtatagct 111098



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                          
Query: 306    accacaagatatagcagggaatgcaatgtactgaatgccattctctttagccagctttaa 365
              ||||||||| || ||||| ||||||||||| ||||| ||||||| |||||| ||||| ||
Sbjct: 111565 accacaagaaattgcaggtaatgcaatgtattgaataccattctgtttagcgagcttcaa 111506

                     
Query: 366    gctattt 372
              |||||||
Sbjct: 111505 gctattt 111499



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 379    gcattctttaatgacacctcaggcttcctgtccatatcatatatgggcccaactgtatgg 438
              ||||| ||||| || |||||||| | | ||||||||||||||||||||||||| || || 
Sbjct: 111394 gcattatttaaggagacctcaggttgcttgtccatatcatatatgggcccaacagtgtgt 111335

                                    
Query: 439    atcacacgggacacgggaagct 460
              ||||| ||||| || |||||||
Sbjct: 111334 atcacgcgggaaacaggaagct 111313



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 572    ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
              ||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 111015 ctccatctacacctccacctcctagcattcgctcattagcagcatt 110970



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 619    acgatggcgtcggtggcgccgtcg 642
              ||||||||||||||||||||||||
Sbjct: 110392 acgatggcgtcggtggcgccgtcg 110369



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                          
Query: 226    acctctttaatatcgcctgaaaattgttgagcagctgaaatagctatgtttgatgcttcc 285
              ||||||||||||||    |||||| |||| ||||  |||| ||| || || |||||||||
Sbjct: 111744 acctctttaatatcattagaaaatcgttgtgcagtagaaacagcaatcttcgatgcttcc 111685

                           
Query: 286    tttggagggtaac 298
              |||||||| ||||
Sbjct: 111684 tttggaggataac 111672
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                            
Query: 469      ggagtaattctagcttctccagtagggcaacggactccaggtttaacctctggaacttta 528
                |||||||| |||||||||||||| ||||| || ||||||| ||| |||||||||||||||
Sbjct: 12450283 ggagtaatcctagcttctccagtggggcagcgaactccagatttgacctctggaacttta 12450224

                                                             
Query: 529      cgacatgcttctacaagttgtggcccagcagcttgatgtatagct 573
                || ||||| ||||| ||||  || ||||||| | |||||||||||
Sbjct: 12450223 cggcatgcctctacgagttcaggtccagcagttcgatgtatagct 12450179



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                            
Query: 306      accacaagatatagcagggaatgcaatgtactgaatgccattctctttagccagctttaa 365
                ||||||||| || ||||| ||||||||||| ||||| ||||||| |||||| ||||| ||
Sbjct: 12450646 accacaagaaattgcaggtaatgcaatgtattgaataccattctgtttagcgagcttcaa 12450587

                       
Query: 366      gctattt 372
                |||||||
Sbjct: 12450586 gctattt 12450580



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                            
Query: 379      gcattctttaatgacacctcaggcttcctgtccatatcatatatgggcccaactgtatgg 438
                ||||| ||||| || |||||||| | | ||||||||||||||||||||||||| || || 
Sbjct: 12450475 gcattatttaaggagacctcaggttgcttgtccatatcatatatgggcccaacagtgtgt 12450416

                                      
Query: 439      atcacacgggacacgggaagct 460
                ||||| ||||| || |||||||
Sbjct: 12450415 atcacgcgggaaacaggaagct 12450394



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 572      ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
                ||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 12450096 ctccatctacacctccacctcctagcattcgctcattagcagcatt 12450051



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 619      acgatggcgtcggtggcgccgtcg 642
                ||||||||||||||||||||||||
Sbjct: 12449473 acgatggcgtcggtggcgccgtcg 12449450



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                            
Query: 226      acctctttaatatcgcctgaaaattgttgagcagctgaaatagctatgtttgatgcttcc 285
                ||||||||||||||    |||||| |||| ||||  |||| ||| || || |||||||||
Sbjct: 12450825 acctctttaatatcattagaaaatcgttgtgcagtagaaacagcaatcttcgatgcttcc 12450766

                             
Query: 286      tttggagggtaac 298
                |||||||| ||||
Sbjct: 12450765 tttggaggataac 12450753
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                             
Query: 572     ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
               |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 2197396 ctccatcaacacctccacctcctagcattcgttcattagcagcatt 2197441
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                              
Query: 572      ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
                |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 28765127 ctccatcaacacctccacctcctagcattcgttcattagcagcatt 28765172



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 572      ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
                |||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 19746226 ctccatcaacacctccacctcctagcattcgtttattagcagcatt 19746181



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 619      acgatggcgtcggtggcgccgtcg 642
                ||||||||| ||||||||||||||
Sbjct: 28765450 acgatggcgacggtggcgccgtcg 28765473



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 619      acgatggcgtcggtggcgccgtcg 642
                ||||||||| ||||||||||||||
Sbjct: 19745903 acgatggcgacggtggcgccgtcg 19745880
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>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                           
Query: 572   ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
             |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 75658 ctccatcaacacctccacctcctagcattcgttcattagcagcatt 75703
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                           
Query: 572   ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
             |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 72902 ctccatcaacacctccacctcctagcattcgttcattagcagcatt 72947



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 619   acgatggcgtcggtggcgccgtcg 642
             ||||||||| ||||||||||||||
Sbjct: 73225 acgatggcgacggtggcgccgtcg 73248
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                            
Query: 572    ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
              |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 165693 ctccatcaacacctccacctcctagcattcgttcattagcagcatt 165738



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 619    acgatggcgtcggtggcgccgtcg 642
              ||||||||| ||||||||||||||
Sbjct: 166016 acgatggcgacggtggcgccgtcg 166039
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>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0551A03
          Length = 173027

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 572   ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
             |||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 13271 ctccatcaacacctccacctcctagcattcgtttattagcagcatt 13226



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 619   acgatggcgtcggtggcgccgtcg 642
             ||||||||| ||||||||||||||
Sbjct: 12948 acgatggcgacggtggcgccgtcg 12925
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>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0001B21
          Length = 143722

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                            
Query: 572    ctccatcaacacctccccctccaagcattcgttcattagcagcatt 617
              |||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 130682 ctccatcaacacctccacctcctagcattcgtttattagcagcatt 130637



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 619    acgatggcgtcggtggcgccgtcg 642
              ||||||||| ||||||||||||||
Sbjct: 130359 acgatggcgacggtggcgccgtcg 130336
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>ref|NM_129622.2| Arabidopsis thaliana unknown protein AT2G40600 mRNA, complete cds
          Length = 916

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 469 ggagtaattctagcttctccagtagggcaacggactccagg 509
           ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 455 ggagtaattcttgcttctccagttggacaacggactccagg 415



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 544 agttgtggcccagcagcttgatgtatagctccatcaacacc 584
           ||||||||||||||||||  |||||| ||||||||| ||||
Sbjct: 380 agttgtggcccagcagctctatgtattgctccatcagcacc 340



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 205 tccgagaacagaacaaaatgcacctctttaa 235
           |||| ||||| ||||||||||||||||||||
Sbjct: 719 tccgcgaacaaaacaaaatgcacctctttaa 689



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 302 aaataccacaagatatagcagggaatgcaatgta 335
           |||| ||||||||||| ||||| |||||||||||
Sbjct: 622 aaatcccacaagatatggcaggaaatgcaatgta 589
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>gb|BT000897.1| Arabidopsis thaliana clone C104910 unknown protein (At2g40600)
           mRNA, complete cds
          Length = 805

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 469 ggagtaattctagcttctccagtagggcaacggactccagg 509
           ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 455 ggagtaattcttgcttctccagttggacaacggactccagg 415



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 544 agttgtggcccagcagcttgatgtatagctccatcaacacc 584
           ||||||||||||||||||  |||||| ||||||||| ||||
Sbjct: 380 agttgtggcccagcagctctatgtattgctccatcagcacc 340



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 205 tccgagaacagaacaaaatgcacctctttaa 235
           |||| ||||| ||||||||||||||||||||
Sbjct: 719 tccgcgaacaaaacaaaatgcacctctttaa 689



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 302 aaataccacaagatatagcagggaatgcaatgta 335
           |||| ||||||||||| ||||| |||||||||||
Sbjct: 622 aaatcccacaagatatggcaggaaatgcaatgta 589
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>gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete
             sequence
          Length = 84675

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 469   ggagtaattctagcttctccagtagggcaacggactccagg 509
             ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 15457 ggagtaattcttgcttctccagttggacaacggactccagg 15417



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 302   aaataccacaagatatagcagggaatgcaatgta 335
             |||| ||||||||||| ||||| |||||||||||
Sbjct: 15816 aaatcccacaagatatggcaggaaatgcaatgta 15783
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>gb|AY050972.1| Arabidopsis thaliana unknown protein (At2g40600) mRNA, partial cds
          Length = 880

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 469 ggagtaattctagcttctccagtagggcaacggactc 505
           ||||||||||| ||||||||||| || ||||||||||
Sbjct: 403 ggagtaattcttgcttctccagttggacaacggactc 367



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 544 agttgtggcccagcagcttgatgtatagctccatcaacacc 584
           ||||||||||||||||||  |||||| ||||||||| ||||
Sbjct: 328 agttgtggcccagcagctctatgtattgctccatcagcacc 288



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 205 tccgagaacagaacaaaatgcacctctttaa 235
           |||| ||||| ||||||||||||||||||||
Sbjct: 667 tccgcgaacaaaacaaaatgcacctctttaa 637



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 302 aaataccacaagatatagcagggaatgcaatgta 335
           |||| ||||||||||| ||||| |||||||||||
Sbjct: 570 aaatcccacaagatatggcaggaaatgcaatgta 537
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>gb|L47610.1|PIAEMB4R Picea glauca EMB4 mRNA
          Length = 1142

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 307 ccacaagatatagcagggaatgcaatgtact 337
           ||||||||||||||||| || ||||||||||
Sbjct: 426 ccacaagatatagcaggaaaagcaatgtact 456
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 616     ttgacgatggcgtcggtggcgc 637
               ||||||||||||||||||||||
Sbjct: 2865796 ttgacgatggcgtcggtggcgc 2865817
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>ref|XM_429829.1| PREDICTED: Gallus gallus LOC421259 (LOC421259), mRNA
          Length = 1644

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 424 ggcccaactgtatggatcaca 444
           |||||||||||||||||||||
Sbjct: 314 ggcccaactgtatggatcaca 294
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>ref|XM_749146.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g13850)
           partial mRNA
          Length = 1065

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 568 atagctccatcaacacctccccctccaag 596
           |||||||| || |||||||||||||||||
Sbjct: 224 atagctccgtccacacctccccctccaag 196
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>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence
          Length = 210797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 163    agcatctcctgggcagtctca 183
              |||||||||||||||||||||
Sbjct: 204282 agcatctcctgggcagtctca 204302
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>dbj|AK123792.1| Homo sapiens cDNA FLJ41798 fis, clone NHNPC2001223
          Length = 2944

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 163  agcatctcctgggcagtctca 183
            |||||||||||||||||||||
Sbjct: 1114 agcatctcctgggcagtctca 1094
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>gb|AC005317.2| Homo sapiens chromosome 15q26.1 clone PAC pDJ457j11 containing DNA
              polymerase gamma (polg) gene, complete sequence
          Length = 170612

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    agcatctcctgggcagtctca 183
              |||||||||||||||||||||
Sbjct: 139734 agcatctcctgggcagtctca 139714
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>ref|XM_392131.2| PREDICTED: Apis mellifera similar to MGC68697 protein (LOC408589),
           mRNA
          Length = 953

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 553 ccagcagcttgatgtatagctccatcaac 581
           ||||||||||  |||||||||||||||||
Sbjct: 470 ccagcagctttgtgtatagctccatcaac 442
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>ref|XM_623178.1| PREDICTED: Apis mellifera similar to MGC68697 protein (LOC408589),
           mRNA
          Length = 1111

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 553 ccagcagcttgatgtatagctccatcaac 581
           ||||||||||  |||||||||||||||||
Sbjct: 628 ccagcagctttgtgtatagctccatcaac 600
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>gb|AC005316.1|AC005316 Human Chromosome 15q26.1 PAC clone pDJ10k5 containing human DNA
             polymerase gamma (polg) gene, complete sequence
          Length = 117270

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   agcatctcctgggcagtctca 183
             |||||||||||||||||||||
Sbjct: 82977 agcatctcctgggcagtctca 82957
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>gb|AC133637.2| Homo sapiens chromosome 15, clone CTD-2335A18, complete sequence
          Length = 61736

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  agcatctcctgggcagtctca 183
            |||||||||||||||||||||
Sbjct: 8532 agcatctcctgggcagtctca 8552
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>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence
          Length = 245260

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   tcatttctcaaattgcatca 163
             ||||||||||||||||||||
Sbjct: 65203 tcatttctcaaattgcatca 65184
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>gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosome 12, complete sequence
          Length = 172126

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    tcatttctcaaattgcatca 163
              ||||||||||||||||||||
Sbjct: 109071 tcatttctcaaattgcatca 109090
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>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence
          Length = 162162

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    acacctccccctccaagcat 599
              ||||||||||||||||||||
Sbjct: 150817 acacctccccctccaagcat 150798
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>gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome 19, complete
            sequence
          Length = 205768

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 580  acacctccccctccaagcat 599
            ||||||||||||||||||||
Sbjct: 7559 acacctccccctccaagcat 7540
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>emb|AL645767.6| Human DNA sequence from clone RP11-318C15 on chromosome 1, complete
             sequence
          Length = 33718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   agcagctgaaatagctatgt 274
             ||||||||||||||||||||
Sbjct: 22364 agcagctgaaatagctatgt 22383
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>emb|AL513024.9| Human DNA sequence from clone RP11-555B19 on chromosome 9, complete
             sequence
          Length = 80957

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tcagataaacacattcaaac 53
             ||||||||||||||||||||
Sbjct: 26220 tcagataaacacattcaaac 26201
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>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the
             TYRP1 gene for tyrosinase-related protein 1, the 3' end of
             a novel gene and the 5' end of a novel gene (FLJ38505
             FLJ90271), complete sequence
          Length = 162151

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   ttaagctattttcgtatgca 381
             ||||||||||||||||||||
Sbjct: 64706 ttaagctattttcgtatgca 64687
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>gb|AC160650.2| Pan troglodytes BAC clone CH251-548K10 from chromosome unknown, complete
              sequence
          Length = 184125

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 210    gaacagaacaaaatgcacctcttt 233
              |||||||||||||||||| |||||
Sbjct: 144244 gaacagaacaaaatgcacttcttt 144221
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>dbj|AK141626.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630047B18 product:unclassifiable, full
            insert sequence
          Length = 2270

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 580  acacctccccctccaagcat 599
            ||||||||||||||||||||
Sbjct: 1855 acacctccccctccaagcat 1874
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>gb|AC155635.3| Mus musculus BAC clone RP24-252C1 from chromosome 9, complete sequence
          Length = 154485

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   tgagcagctgaaatagctatgttt 276
             |||| |||||||||||||||||||
Sbjct: 45939 tgagaagctgaaatagctatgttt 45916
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 536      cttctacaagttgtggccca 555
                ||||||||||||||||||||
Sbjct: 22055181 cttctacaagttgtggccca 22055162
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 613     gcattgacgatggcgtcggt 632
               ||||||||||||||||||||
Sbjct: 2056445 gcattgacgatggcgtcggt 2056426
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   cttctacaagttgtggccca 555
             ||||||||||||||||||||
Sbjct: 97245 cttctacaagttgtggccca 97226
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>emb|BX927255.9| Zebrafish DNA sequence from clone CH211-266I18 in linkage group 20,
              complete sequence
          Length = 155519

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    tattttcgtatgcattcttt 387
              ||||||||||||||||||||
Sbjct: 149309 tattttcgtatgcattcttt 149290
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>emb|BX537272.5| Zebrafish DNA sequence from clone DKEY-25E12 in linkage group 20,
              complete sequence
          Length = 210184

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    tattttcgtatgcattcttt 387
              ||||||||||||||||||||
Sbjct: 168659 tattttcgtatgcattcttt 168640
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>gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, complete sequence
          Length = 186439

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ctgaaaattgttgagcagct 261
             ||||||||||||||||||||
Sbjct: 80684 ctgaaaattgttgagcagct 80665
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 616   ttgacgatggcgtcggtggc 635
             ||||||||||||||||||||
Sbjct: 51533 ttgacgatggcgtcggtggc 51552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,401,152
Number of Sequences: 3902068
Number of extensions: 5401152
Number of successful extensions: 98935
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98513
Number of HSP's gapped (non-prelim): 413
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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