Clone Information

BLAST Search Result

Clone Name	rbags26c14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FACD2_RAT (Q6IV68) Fanconi anemia group D2 protein homolog (Prot...	65	1e-10
2	FACD2_HUMAN (Q9BXW9) Fanconi anemia group D2 protein (Protein FA...	64	3e-10
3	FACD2_MOUSE (Q80V62) Fanconi anemia group D2 protein homolog (Pr...	64	3e-10
4	PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-co...	35	0.16
5	YEMA_DROME (P25992) Yemanuclein-alpha	34	0.28
6	HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)	33	0.36
7	ATC4_YEAST (Q12675) Probable phospholipid-transporting ATPase DN...	33	0.48
8	MPP10_HUMAN (O00566) U3 small nucleolar ribonucleoprotein protei...	32	0.81
9	A4_TETFL (O73683) Amyloid beta A4 protein precursor (APP) (ABPP)...	31	1.8
10	TNNT2_HUMAN (P45379) Troponin T, cardiac muscle (TnTc) (Cardiac ...	31	2.4
11	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	30	3.1
12	PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid)	30	3.1
13	YKKA_BACSU (P49854) Hypothetical protein ykkA	30	3.1
14	DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)	30	3.1
15	V120_HHV6G (P30003) Capsid assembly protein U30 (Fragment)	30	3.1
16	MBB1A_BRARE (Q6DRL5) Myb-binding protein 1A-like protein	30	4.0
17	NUOH_BUCAI (P57258) NADH-quinone oxidoreductase chain H (EC 1.6....	30	4.0
18	SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-as...	30	4.0
19	ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)	30	4.0
20	V120_HHV6U (P52437) Capsid assembly protein U30	30	4.0
21	TF3C3_HUMAN (Q9Y5Q9) General transcription factor 3C polypeptide...	30	4.0
22	PLLP_MOUSE (Q9DCU2) Plasmolipin (Plasma membrane proteolipid)	30	4.0
23	MPP10_MOUSE (Q810V0) U3 small nucleolar ribonucleoprotein protei...	30	4.0
24	DUT_HCMVA (P16824) Deoxyuridine 5'-triphosphate nucleotidohydrol...	30	4.0
25	TIG_WOLTR (Q5GS82) Trigger factor (TF)	30	5.3
26	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	30	5.3
27	YDE1_SCHPO (Q10435) Probable ubiquitin fusion degradation protei...	30	5.3
28	VB17_VACCV (Q01221) Protein B17	30	5.3
29	VB17_VACCC (P21075) Protein B17	30	5.3
30	TRM1_ARATH (Q9LFU5) Probable N(2),N(2)-dimethylguanosine tRNA me...	29	6.9
31	RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P	29	6.9
32	ZN480_HUMAN (Q8WV37) Zinc finger protein 480	29	6.9
33	PP4R1_MOUSE (Q8K2V1) Serine/threonine-protein phosphatase 4 regu...	29	6.9
34	NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginin...	29	6.9
35	KLC4_HUMAN (Q9NSK0) Kinesin light chain 4 (KLC 4) (Kinesin-like ...	29	6.9
36	GARP_PLAFF (P13816) Glutamic acid-rich protein precursor	29	6.9
37	VB17_VARV (P33878) Protein B17	29	6.9
38	DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A...	29	9.0
39	K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin...	29	9.0
40	RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-ass...	29	9.0
41	PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDb...	29	9.0
42	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	29	9.0
43	SYV_THEFY (Q47NK0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	29	9.0
44	K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin...	29	9.0
45	HSP7F_SCHPO (O59838) Heat shock protein homolog pss1	29	9.0
46	SGF73_YEAST (P53165) SAGA-associated factor 73 (73 kDa SAGA-asso...	29	9.0
47	FREQ_DROME (P37236) Frequenin-1 (d-FRQ)	29	9.0
48	BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1...	29	9.0
49	UBC2_CANAL (O74201) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2....	29	9.0
50	KRHB4_HUMAN (Q9NSB2) Keratin, type II cuticular Hb4 (Hair kerati...	29	9.0

>FACD2_RAT (Q6IV68) Fanconi anemia group D2 protein homolog (Protein FACD2)|
            (FanCD2)
          Length = 1451

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 38/132 (28%), Positives = 72/132 (54%)
 Frame = -1

Query: 516  FGQHGDNIVHMIKEVQKATRTIQTICAEAKGYKRTMITSKIPATKRSMERFLFQVKALLE 337
            F +H D+++ +++ +Q  TR +  +C  +K ++ T +T  +P  K+S+E  + +VKA+L 
Sbjct: 1317 FRKHRDDVLSLLQTLQLNTRLLHHLCGHSKIHQDTRLTKHVPLLKKSLELLVCRVKAMLV 1376

Query: 336  HCSNVERCWIGNLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDD 157
              +  E  W+G LK++DL G  + SQ   + ++ S D E      D  T     ++ ++D
Sbjct: 1377 LNNCREAFWLGTLKNRDLQGEEIISQHPSSPENTSEDSE------DGMTSYVSRNRAIED 1430

Query: 156  DVTENEATPLED 121
               E+EA   +D
Sbjct: 1431 G--EDEANDGQD 1440

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>FACD2_HUMAN (Q9BXW9) Fanconi anemia group D2 protein (Protein FACD2)|
          Length = 1471

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 30/105 (28%), Positives = 62/105 (59%)
 Frame = -1

Query: 516  FGQHGDNIVHMIKEVQKATRTIQTICAEAKGYKRTMITSKIPATKRSMERFLFQVKALLE 337
            F +H ++++ +++  Q  TR +  +C  +K ++ T +T  +P  K+++E  + +VKA+L 
Sbjct: 1317 FRKHREDVLSLLETFQLDTRLLHHLCGHSKIHQDTRLTQHVPLLKKTLELLVCRVKAMLT 1376

Query: 336  HCSNVERCWIGNLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMET 202
              +  E  W+GNLK++DL G  + SQ   N  + + D  +++M +
Sbjct: 1377 LNNCREAFWLGNLKNRDLQGEEIKSQ---NSQESTADESEDDMSS 1418

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>FACD2_MOUSE (Q80V62) Fanconi anemia group D2 protein homolog (Protein FACD2)|
          Length = 1450

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
 Frame = -1

Query: 516  FGQHGDNIVHMIKEVQKATRTIQTICAEAKGYKRTMITSKIPATKRSMERFLFQVKALLE 337
            F +H ++++ +++ +Q  TR +  +C  +K  + T +T  +P  K+S+E  + +VKA+L 
Sbjct: 1315 FRKHREDVLSLLQTLQLNTRLLHHLCGHSKIRQDTRLTKHVPLLKKSLELLVCRVKAMLV 1374

Query: 336  HCSNVERCWIGNLKHKDLHGHVVSSQVYGNVDDKSND--------VEQEEMETDPETPAE 181
              +  E  W+G LK++DL G  + SQ   + +  + D        V +     D E  A 
Sbjct: 1375 LNNCREAFWLGTLKNRDLQGEEIISQDPSSSESNAEDSEDGVTSHVSRNRATEDGEDEAS 1434

Query: 180  ENDKMVDDDVTENEAT 133
            +  K  D D +++ ++
Sbjct: 1435 DEQKDQDSDESDDSSS 1450

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>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing|
           protein 2) (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
          Length = 1706

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = -1

Query: 243 DDKSNDVEQEEMETDPETPAEENDKMVDDDVTE----NEATPLED*PHPRCQ 100
           D + NDVE+EE+E + E   EE +++ +D V E    NE++  E  P  RC+
Sbjct: 259 DCEVNDVEEEELEEEEELEEEEEEELGEDGVEEADMPNESSAKE--PEIRCE 308

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>YEMA_DROME (P25992) Yemanuclein-alpha|
          Length = 1002

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -1

Query: 267 SSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED 121
           SS   G+ D+  +   +E+ E+D E  +EEND+   +D +E+E+   ED
Sbjct: 213 SSSSSGDDDENDDGNNEEDDESDSEDDSEENDESDSEDDSESESLEDED 261

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>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 243 DDKSNDVEQEEMETDPETPAEENDKMVD--DDVTENEATPLED*PHPRCQSPNVS 85
           DD  N  ++EE +   E+ +EE+D   D  DD +E E     + P  R   PN S
Sbjct: 153 DDSENSGDEEEEKVTAESDSEEDDSSDDEEDDSSEEETPKKPEEPKKRSAEPNSS 207

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>ATC4_YEAST (Q12675) Probable phospholipid-transporting ATPase DNF2 (EC|
           3.6.3.1)
          Length = 1612

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 291 KDLHGHVVSSQVYGNVDDKSND--VEQEEMETDPETPAEENDKMVDDDVTENEATPL 127
           KD+    +S   +  +DD SND  +  ++     +T   E++  VDDD+   +ATP+
Sbjct: 66  KDISTPDLSKVTFDGIDDYSNDNDINDDDELNGKKTEIHEHENEVDDDLHSFQATPM 122

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>MPP10_HUMAN (O00566) U3 small nucleolar ribonucleoprotein protein MPP10 (M|
           phase phosphoprotein 10)
          Length = 681

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -1

Query: 303 NLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAE----ENDKMVDDDVTENE 139
           NLK+KD    V S +   NV D   D  +E+ E   E   E    E D+  DDD+ ENE
Sbjct: 263 NLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDE--DDDLQENE 319

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>A4_TETFL (O73683) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer|
           disease amyloid A4 A4 protein homolog) [Contains:
           Beta-amyloid protein (Beta-APP) (A-beta)]
          Length = 780

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 273 VVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLE 124
           VV  +  G V  + ++ E+E ++TD +   EE+ +  DD+  E +   ++
Sbjct: 239 VVEEEEEGEVAQEDDEEEEEVLDTDQDGDGEEDHEAADDEEEEEDVDEID 288

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>TNNT2_HUMAN (P45379) Troponin T, cardiac muscle (TnTc) (Cardiac muscle troponin|
           T) (cTnT)
          Length = 297

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = -1

Query: 237 KSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED*P------HPRCQSPNV 88
           +  D ++E  E D E  AE  +   ++D  E EA   ED P       PR   PN+
Sbjct: 28  EDEDEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFMPNL 83

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +3

Query: 123  PPTVLP-RFLSHHHPPSCHFLRLEFQDQSPSLLVLHHLICHPRCRTPESLPHAHAS-PCV 296
            PP + P   LS HHPPS H   L+   QS  L         P     +SLP   AS P  
Sbjct: 958  PPALKPLSSLSTHHPPSAHPPPLQLMPQSQPL--PSSPAQPPGLTQSQSLPPPAASHPTT 1015

Query: 297  SDYQ---SSNAPH*SSVPGGP 350
              +Q    S  P    VPGGP
Sbjct: 1016 GLHQVPSQSPFPQHPFVPGGP 1036

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>PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid)|
          Length = 182

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 163 HHLVIFFGWSFRISLHLFLFYII*FVIHV-AVHLRAYHMPMQVLVFQITNPATL 321
           +HL   +GW   +++ L+L  I+ F+I++  +H++ Y +P  +++      AT+
Sbjct: 60  YHLYPAYGWVMFVAVFLWLVTIVFFIIYLFQLHMKLYMVPWPLVLLVFFVAATV 113

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>YKKA_BACSU (P49854) Hypothetical protein ykkA|
          Length = 175

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -1

Query: 345 LLEHCSNVERCWIGNLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKM 166
           LL H +NV+  W+  +K   +  H+   Q YG + D+S  + +   + D +   + +  +
Sbjct: 55  LLHHITNVDIRWVWRIKENRIPDHI--EQAYGPMTDESGRLPEPVNQPDLDELLKRHQHV 112

Query: 165 VD 160
           V+
Sbjct: 113 VE 114

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>DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)|
          Length = 731

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -1

Query: 243 DDKSNDVEQEEMETDPETPAEENDK-----MVDDDVTENEATPLED*PHPRCQSP 94
           DD+ +D E+EE E + E   E+ D+       D D  E E    ED   P   SP
Sbjct: 437 DDEESDDEEEEEEEEEEEATEDEDEDLEQLQEDQDDEEEEEGDNEDDKSPASPSP 491

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>V120_HHV6G (P30003) Capsid assembly protein U30 (Fragment)|
          Length = 798

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
 Frame = -1

Query: 498 NIVHMIKEVQKATRTIQTICAEAKGYKRTMIT----SKIPATKRSMERFLFQVKALLEHC 331
           N+V   +E +K+ +TIQ       G  R +IT    SK   T  ++++F+  V+ + +H 
Sbjct: 592 NLVRQHEEFEKSLQTIQISETTLTGMLRNIITSVSSSKELLTNEALQKFIDTVQRISQHV 651

Query: 330 S--------NVERCWIGN 301
           +        N+E+C   N
Sbjct: 652 NETYQSISMNLEKCKTSN 669

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>MBB1A_BRARE (Q6DRL5) Myb-binding protein 1A-like protein|
          Length = 1269

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 297 KHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENE 139
           K +D  G VV+       DDK   +++E+ + D E   ++ND+  DDD  ++E
Sbjct: 711 KDEDESGVVVT-------DDKKRKLKEEDEDDDDEEEDDDNDEGDDDDDDDDE 756

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>NUOH_BUCAI (P57258) NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain H) (NDH-1, chain H)
          Length = 322

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
 Frame = +1

Query: 100 LAPWVRS----ILQRCCLVFCHIII--------HHLVIFFGWSFRISLHLFLFYII*FVI 243
           L PW+ S    IL+    +F  I+I        +  V+ FGW F + L LF  ++  F+I
Sbjct: 261 LGPWIPSCIWFILKIIFFIFLFILIRAALPRPRYDQVLLFGWKFCLPLTLFNLFLTAFLI 320

Query: 244 HV 249
            V
Sbjct: 321 LV 322

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>SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-associated|
           protein 114) (SAP 114) (SF3a120)
          Length = 793

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 243 DDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED*PHPRCQSPNVSSVII 73
           DDK    E+   + D +T  ++ D+  DD+    +  P  + P P    P    VI+
Sbjct: 333 DDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIV 389

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>ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)|
          Length = 643

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 244 HVAVHLRAYHMPMQVLVFQITNPATLHIRAVFQEGLHLKEKPLHGSLCGRYLARDHC 414
           ++ VH R +         Q     + H   +  + +H  EKP   S CGR  +++HC
Sbjct: 485 YLIVHRRIHTGEKPFDCSQCWKAFSCHSSLIMHQRIHTGEKPYKCSECGRAFSQNHC 541

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>V120_HHV6U (P52437) Capsid assembly protein U30|
          Length = 1082

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
 Frame = -1

Query: 498  NIVHMIKEVQKATRTIQTICAEAKGYKRTMIT----SKIPATKRSMERFLFQVKALLEHC 331
            N+V   +E +K+ +TIQ       G  R +IT    SK   T  ++++F+  V+ + +H 
Sbjct: 876  NLVRQHEEFEKSLQTIQISEITLTGMLRNIITSVSSSKELLTNEALQKFIDTVQRISQHV 935

Query: 330  S--------NVERCWIGN 301
            +        N+E+C   N
Sbjct: 936  NETYHSISVNLEKCKTSN 953

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>TF3C3_HUMAN (Q9Y5Q9) General transcription factor 3C polypeptide 3|
           (Transcription factor IIIC-gamma subunit) (TF3C-gamma)
           (TFIIIC 102 kDa subunit) (TFIIIC102)
          Length = 886

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -1

Query: 291 KDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAE--ENDKMVDDDVTENEATPLED* 118
           K +H  V +S +  N DD+  + E+EE E + ETP +    D  V + V   E   +   
Sbjct: 80  KSVH-KVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGDVFVLEMVLNRETKKMMKE 138

Query: 117 PHPRCQSP 94
             PR + P
Sbjct: 139 KRPRSKLP 146

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>PLLP_MOUSE (Q9DCU2) Plasmolipin (Plasma membrane proteolipid)|
          Length = 182

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 163 HHLVIFFGWSFRISLHLFLFYII*FVIHV-AVHLRAYHMPMQVLVFQITNPATL 321
           +HL   +GW   +++ L+L  I+ F+I++  +H++ Y +P  +++      AT+
Sbjct: 60  YHLYPAYGWVMFVAVFLWLVTIVFFIIYLFQLHMKLYMVPWPLVLLIFFVAATV 113

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>MPP10_MOUSE (Q810V0) U3 small nucleolar ribonucleoprotein protein MPP10 (M|
           phase phosphoprotein 10)
          Length = 681

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 303 NLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENE 139
           NLK+KD    V S +    VD++    E++E E   E  AEE D+ + D   +N+
Sbjct: 265 NLKYKDFFDPVESDEDITGVDEELGPDEEKEEE---EGFAEEADESISDTDEDND 316

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>DUT_HCMVA (P16824) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 388

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 276 HVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVD 160
           H +  +    VDD  ++ E++E  +D E+P   ND + D
Sbjct: 341 HALLQRTPSPVDDDVDETEEDEKSSDAESPVNTNDVIFD 379

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>TIG_WOLTR (Q5GS82) Trigger factor (TF)|
          Length = 447

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
 Frame = -1

Query: 471 QKATRTIQTICAEAK--GYKRTMITSKIPATKRSMERFLFQVKALLEHCSNVERCWIGNL 298
           QK    +Q I   AK  G++   +   +  T    E   + V + +++CS+         
Sbjct: 44  QKVNSRLQEIAKNAKLPGFRSGKMPYDLVVTNYKNEALEYVVNSTIDYCSS--------- 94

Query: 297 KHKDLHGHV-VSSQVYGNVD-----------DKSNDVEQEEMETDPETPAEENDKM 166
              DL   + V S +Y  VD           +KSN V +   E+ PE P  + DK+
Sbjct: 95  ---DLMKKIEVKSHIYPKVDIMSLPNLNEEGEKSNFVYKLSFESMPEVPVIDLDKI 147

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
 Frame = +3

Query: 123  PPTVLP-RFLSHHHPPSCHFLRLEFQDQS---PSLLVLHHLICHPRCRTPESLPHAHASP 290
            PP + P   LS HHPPS H   L+   QS   PS       +   +   P +  H     
Sbjct: 957  PPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGG 1016

Query: 291  CVSDYQSSNAPH*SSVPGGP 350
                   S  P    VPGGP
Sbjct: 1017 LHQVPSQSPFPQHPFVPGGP 1036

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>YDE1_SCHPO (Q10435) Probable ubiquitin fusion degradation protein C12B10.01c|
          Length = 1647

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -1

Query: 240 DKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED*PHPRCQSPNVSSVII 73
           ++  DV++EE E D     E ND+  D+D  EN+    E+       SPN S+ +I
Sbjct: 245 ERDEDVDEEEEEDDD----ENNDEGDDEDENENDELRSEN------GSPNPSAAVI 290

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>VB17_VACCV (Q01221) Protein B17|
          Length = 340

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 378 SMERFLFQVKALLEHCSNVERCWIGNLKHKDLHGHVVSSQVYGNVD 241
           S E+++ +   L  +C NV RC    L  K LH  + + ++Y N++
Sbjct: 37  SAEKYMCRYTTLNHNCINVRRC---ALDSKLLHDIITNCKIYNNIE 79

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>VB17_VACCC (P21075) Protein B17|
          Length = 340

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 378 SMERFLFQVKALLEHCSNVERCWIGNLKHKDLHGHVVSSQVYGNVD 241
           S E+++ +   L  +C NV RC    L  K LH  + + ++Y N++
Sbjct: 37  SAEKYMCRYTTLNHNCVNVRRC---ALDSKLLHDIITNCKIYNNIE 79

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>TRM1_ARATH (Q9LFU5) Probable N(2),N(2)-dimethylguanosine tRNA|
           methyltransferase (EC 2.1.1.32)
           (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA
           2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 586

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
 Frame = -1

Query: 414 TMITSKIPATKRSMERFL-----FQVKALLEHCSNVERCWIGNL--------KHKDLHGH 274
           ++I SK P+ +    R +      Q K +     N E+ W   +        KH  L GH
Sbjct: 477 SVILSKEPSHQADFSRHVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTITSKHVSLLGH 536

Query: 273 VVSSQVYGNVDDKSNDVEQEEMETDPETPAEEND 172
              +    N   ++ D E+EE E +PE    E +
Sbjct: 537 EAVNGHLNNNHKEAGDEEEEEEEEEPEEDIIEGE 570

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>RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P|
          Length = 305

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 246 VDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED 121
           +D++  + E  +  T P   AEE D+ +D+DV E EA  L D
Sbjct: 253 IDEEGVEAETGDAPTSPPDAAEEPDEALDEDV-EAEAEELLD 293

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>ZN480_HUMAN (Q8WV37) Zinc finger protein 480|
          Length = 516

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
 Frame = +1

Query: 253 VHLRA--YHMPMQVLVFQITNPATLHIRAVFQEGLHLKEKPLHGSLCGRYLAR-----DH 411
           VHLR   Y       VF++++  T H      + +H  EKP   + CG+  +R     +H
Sbjct: 177 VHLREKPYECNEHSKVFRVSSSLTKH------QVIHTVEKPYKCNSCGKVFSRNSHLAEH 230

Query: 412 CSLVTLCLCTYSLDCSCCFLNFFYHVNY 495
           C + T         C+ C   F Y+ N+
Sbjct: 231 CRIHT---GEKPYKCNVCGKVFSYNSNF 255

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>PP4R1_MOUSE (Q8K2V1) Serine/threonine-protein phosphatase 4 regulatory subunit|
           1
          Length = 951

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 219 QEEMETDPETPAEENDKMVDDDVTENEATPLED*P 115
           ++E ++  ++ AE+ D+M D+DV E E    ED P
Sbjct: 333 KDESKSSEDSSAEDKDRMRDNDVVEEEHRRPEDAP 367

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>NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1161

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 252 GNVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED 121
           GN  D+  + E+EE E + E   EE ++  DDD  E+    ++D
Sbjct: 135 GNATDEEEEEEEEEEEGEEE---EEEEEDDDDDDDEDSGAEIQD 175

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>KLC4_HUMAN (Q9NSK0) Kinesin light chain 4 (KLC 4) (Kinesin-like protein 8)|
          Length = 625

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 22/94 (23%), Positives = 41/94 (43%)
 Frame = -1

Query: 477 EVQKATRTIQTICAEAKGYKRTMITSKIPATKRSMERFLFQVKALLEHCSNVERCWIGNL 298
           E QK    ++ +C E +      +  ++  T++ ++R    V  L E   ++E  ++G L
Sbjct: 107 EKQKLRAQVRRLCQENQ-----WLRDELAGTQQRLQRSEQAVAQLEEEKKHLE--FLGQL 159

Query: 297 KHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDP 196
           +  D  GH    +      D  +D+   E E DP
Sbjct: 160 RQYDEDGHTSEEKEGDATKDSLDDLFPNEEEEDP 193

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>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor|
          Length = 678

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 243 DDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEATPLED 121
           +++  + E+EE E + E   E+ D+  +DD  E+E    ED
Sbjct: 585 EEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEED 625

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>VB17_VARV (P33878) Protein B17|
          Length = 340

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 378 SMERFLFQVKALLEHCSNVERCWIGNLKHKDLHGHVVSSQVYGNVD 241
           S E+++ +   L  +C NV RC    L  K LH  + + ++Y N++
Sbjct: 37  SAEKYMCRYTILNHNCVNVRRC---ALDSKLLHDIITNCKIYNNIE 79

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>DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2286

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
 Frame = -1

Query: 318  RCW----------IGNLKHK---DLHGHVVSSQVYGNVDDKS-NDVEQEEMETDPETPAE 181
            RCW           G +K K    +H  +  SQ  G  +D+  N+ ++EE + + E  AE
Sbjct: 1909 RCWEFLLWMDPSNYGGIKGKVSSRIHCGLQDSQKAGGAEDEQENEDDEEERDGEEEEEAE 1968

Query: 180  ENDKMVDDDVTENEATPLED*PH-PRCQSPNVSSVIIYLV 64
            E++    +D+ EN    L+  P    CQ+  +  V  Y+V
Sbjct: 1969 ESNV---EDLLENNWNILQFLPQAASCQNYFLMIVSAYIV 2005

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>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 522 TQFGQHGDNIVHMIKEVQKATRTIQTICAEAKGYKR 415
           T  G+HGD++ +   E+ +  R IQ + AE +G K+
Sbjct: 402 TTAGRHGDDLRNTKSEIIELNRMIQRLRAEIEGVKK 437

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>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -1

Query: 288  DLHGHVVSSQVYGNVDDKSNDVEQEEMETDPE------TPAEENDKMVDDDVTENEATPL 127
            +L  H+V+S V  + +   +D+++EE E + E       P     ++  + + EN A P 
Sbjct: 1231 ELGVHLVNSLVDHSRNSDLSDIQEEEEEEEEEEEELGSRPCSSQKQVAGNSIRENGAKPQ 1290

Query: 126  ED*PHPRCQSPNVSSVI 76
               P P C++ +   ++
Sbjct: 1291 ---PDPFCETDSDEEIL 1304

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>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta|
           2) (PLDdelta1)
          Length = 915

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 147 LSHHHPPSCHFLRLEFQDQSP 209
           L HHHPP  ++   ++Q Q P
Sbjct: 38  LDHHHPPMSYYASFDYQHQPP 58

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
 Frame = +3

Query: 123  PPTVLP-RFLSHHHPPSCHFLRLEFQDQS----------PSLLVLHHLICHPRCRTPESL 269
            PP + P   LS HHPPS H   L+   QS          P L    +L   P    P  L
Sbjct: 966  PPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGL 1025

Query: 270  PHAHASPCVSDYQSSNAPH*SSVPGGP 350
                  P  + +          VPGGP
Sbjct: 1026 HQVAPQPPFAQH--------PFVPGGP 1044

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>SYV_THEFY (Q47NK0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 237 CHPRCRTPESLPHAHASPCVSDYQSSNAPH*SSVPGGPSLERETAPWISLWQVS 398
           C PR   P        S C   +  +N     +VP  PSL+   A W+ +W  S
Sbjct: 3   CRPR--GPRGQAERAGSRCQYHWPMTNRSRSFNVPDKPSLDGIEAKWVDVWDES 54

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>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)|
           (Keratin-4) (K4)
          Length = 534

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 510 QHGDNIVHMIKEVQKATRTIQTICAEAKGYKRTMITSKI 394
           QHGDN+ +   E+ +  R IQ + AE +  K+   T ++
Sbjct: 357 QHGDNLKNTKSEIAELNRMIQRLRAEIENIKKQCQTLQV 395

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>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1|
          Length = 720

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 288 DLHGHVVSSQVYGNVDDKSNDVEQEEMETDPET-PAEENDKMVDDDV 151
           DLHG +V  Q Y         VE++E+E   ET P EE +K  D+ V
Sbjct: 490 DLHGILVVEQAY--------IVEEQEVEEPVETSPEEEAEKKTDEPV 528

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>SGF73_YEAST (P53165) SAGA-associated factor 73 (73 kDa SAGA-associated factor)|
           (SAGA histone acetyltransferase complex 73 kDa subunit)
          Length = 657

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 249 NVDDKSNDVEQEEMETDPETPAEENDKMVDDDVTENEA 136
           N DD SND   ++ + D     E++D   DDD   N A
Sbjct: 130 NDDDNSNDNNNDDDDDDDNDDNEDDDDADDDDDNSNGA 167

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>FREQ_DROME (P37236) Frequenin-1 (d-FRQ)|
          Length = 186

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 312 WIGNLKHKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVD 160
           W   L   D  G++   ++Y  VD     V Q+    D  TP +  DK+ D
Sbjct: 102 WAFRLYDVDNDGYITREEMYNIVDAIYQMVGQQPQSEDENTPQKRVDKIFD 152

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>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)|
          Length = 1161

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 264 SQVYGNVDDKSNDVEQEEMETDPETP-AEENDKMVDDDVTENEATPLED 121
           + V G V  K ND  + + E+DP +P + E ++  D++V + E     D
Sbjct: 727 TSVQGQVQ-KGNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDFND 774

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>UBC2_CANAL (O74201) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier
           protein UBC2) (Radiation sensitivity protein 6)
          Length = 179

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 294 HKDLHGHVVSSQVYGNVDDKSNDVEQEEMETDPETPAEENDKMVDDD 154
           H+ L+   V   V  + +D  ++ E+EE E + E   +++D  +D+D
Sbjct: 133 HRSLYVKRVRETVENSWNDDDDEEEEEEDEDEAEDEDDDDDDNIDED 179

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>KRHB4_HUMAN (Q9NSB2) Keratin, type II cuticular Hb4 (Hair keratin, type II Hb4)|
          Length = 600

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 513 GQHGDNIVHMIKEVQKATRTIQTICAEAKGYK--RTMITSKIPATKRSMERFLFQVKALL 340
           GQH DN+ ++  E+ + TR IQ + AE +  K  R  + + +   ++  E  L   K  L
Sbjct: 368 GQHCDNLRNIRNEINELTRLIQRLKAEIEHAKAQRAKLEAAVAEAEQQGEATLSDAKCKL 427


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,415,932
Number of Sequences: 219361
Number of extensions: 1679357
Number of successful extensions: 7119
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 6349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7015
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result