ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25n13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1792_ARCFU (O28482) Hypothetical protein AF1792 30 5.4
2SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor 30 5.4
3BMP15_SHEEP (Q9MZE2) Bone morphogenetic protein 15 precursor (BM... 29 9.2

>Y1792_ARCFU (O28482) Hypothetical protein AF1792|
          Length = 137

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -1

Query: 324 EGFDRRNSNPVTIGALCASALIG*TVYHTENGQCVAAVVETKCRLVLLVLIYGYYEF 154
           E   RR     +IGA  + A++     HTE    +A      C LVL ++ YGYY F
Sbjct: 79  ERASRRTVEIFSIGAALSGAVMLALDLHTE--AALALEFAVCCVLVLYLIFYGYYSF 133



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>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor|
          Length = 445

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 345 SAYNSSPSNSPKINHPPTSNWP 410
           +A++SSP++ P+   PPT +WP
Sbjct: 119 AAFSSSPASPPRPGMPPTRSWP 140



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>BMP15_SHEEP (Q9MZE2) Bone morphogenetic protein 15 precursor (BMP-15)|
           (Growth/differentiation factor 9B) (GDF-9B)
          Length = 393

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -3

Query: 190 SVARAHLWLL*I*FEEQLACCQIGPRSILHL-------LMLQCLRFAVGNSRLYPRFVRK 32
           S+ R  LW L +  E ++   Q+G  SI HL       L+ + L  A G  +  PR +  
Sbjct: 5   SILRILLWGLVLFMEHRVQMTQVGQPSIAHLPEAPTLPLIQELLEEAPGKQQRKPRVLGH 64

Query: 31  LLRY 20
            LRY
Sbjct: 65  PLRY 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,106,303
Number of Sequences: 219361
Number of extensions: 1745261
Number of successful extensions: 4218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4215
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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