ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25n05 |
|---|---|
| Clone Library Name | barley_pub |
>P2_ARATH (Q39173) Probable NADP-dependent oxidoreductase P2 (EC 1.3.1.74)| Length = 343 Score = 94.0 bits (232), Expect = 8e-20 Identities = 45/74 (60%), Positives = 56/74 (75%) Frame = -2 Query: 380 NLVYLVSKRIRMQGFVEPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIGL 201 NL ++ KRIR+QGFV D YP++ VLP IK+GK+ YVEDV +GLE AP AL+GL Sbjct: 268 NLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGL 327 Query: 200 FHGRNVGKQVVKLA 159 FHG+NVGKQVV +A Sbjct: 328 FHGKNVGKQVVVIA 341
>P1_ARATH (Q39172) Probable NADP-dependent oxidoreductase P1 (EC 1.3.1.74)| Length = 345 Score = 93.6 bits (231), Expect = 1e-19 Identities = 44/74 (59%), Positives = 57/74 (77%) Frame = -2 Query: 380 NLVYLVSKRIRMQGFVEPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIGL 201 NL ++ KRIR+QGFV D Y ++ +VLPHI++GK+ YVEDV +GLE AP AL+GL Sbjct: 270 NLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGL 329 Query: 200 FHGRNVGKQVVKLA 159 FHG+NVGKQVV +A Sbjct: 330 FHGKNVGKQVVVVA 343
>YNCB_ECOLI (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-)| Length = 353 Score = 57.8 bits (138), Expect = 6e-09 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = -2 Query: 368 LVSKRIRMQGFV-EPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIGLFHG 192 ++ KRIR+QGF+ D+ H E++ + +K+ K+ Y E++ +GLE AP IGL G Sbjct: 280 VLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKG 339 Query: 191 RNVGKQVVKLA 159 +N GK V+++A Sbjct: 340 KNFGKVVIRVA 350
>LTB4D_RAT (P97584) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (Dithiolethione-inducible gene 1 protein) (D3T-inducible gene 1 protein) (DIG-1) Length = 329 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Frame = -2 Query: 368 LVSKRIRMQGFV------EPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALI 207 ++ +++RM+GF+ E K L + WV +GK+ Y E + EG E P A + Sbjct: 260 IIYQQLRMEGFIVTRWQGEVRQKAL-TDLMNWV----SEGKIRYHEYITEGFEKMPAAFM 314 Query: 206 GLFHGRNVGKQVVK 165 G+ G N+GK +VK Sbjct: 315 GMLKGDNLGKTIVK 328
>LTB4D_PIG (Q29073) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -2 Query: 290 VLPHIKDGKVVYVEDVVEGLEAAPGALIGLFHGRNVGKQVVK 165 +L + +GK+ Y E + EG E P A +G+ G N+GK +VK Sbjct: 287 LLKWVSEGKIQYHEHITEGFENMPAAFMGMLKGENLGKAIVK 328
>LTB4D_HUMAN (Q14914) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 42.0 bits (97), Expect = 4e-04 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = -2 Query: 368 LVSKRIRMQGFVE-----PDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIG 204 ++ + +RM+ FV + + WVL +GK+ Y E ++EG E P A +G Sbjct: 260 VIYQELRMEAFVVYRWQGDARQKALKDLLKWVL----EGKIQYKEYIIEGFENMPAAFMG 315 Query: 203 LFHGRNVGKQVVK 165 + G N+GK +VK Sbjct: 316 MLKGDNLGKTIVK 328
>LTB4D_MOUSE (Q91YR9) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 41.6 bits (96), Expect = 5e-04 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = -2 Query: 368 LVSKRIRMQGFV------EPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALI 207 ++ +++RM+GF+ E K L E WV +GKV E V EG E P A + Sbjct: 260 VIYQQLRMEGFIVNRWQGEVRQKAL-TELMNWV----SEGKVQCHEYVTEGFEKMPAAFM 314 Query: 206 GLFHGRNVGKQVVK 165 G+ G N+GK +VK Sbjct: 315 GMLKGENLGKTIVK 328
>LTB4D_RABIT (Q28719) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (ADRAB-F) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 349 Score = 41.2 bits (95), Expect = 6e-04 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Frame = -2 Query: 359 KRIRMQGFV------EPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIGLF 198 + IRM+GF+ E K L E WVL +GK+ Y E V+EG E P A + + Sbjct: 263 QEIRMEGFIFNRWKGEVGQKAL-KELLTWVL----EGKIQYREFVIEGFENMPAAFMRML 317 Query: 197 HGRNVGK 177 G NVGK Sbjct: 318 KGENVGK 324
>LTB4D_CAVPO (Q9EQZ5) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (LTB4) (12-HD) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (PGR) Length = 329 Score = 40.4 bits (93), Expect = 0.001 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Frame = -2 Query: 368 LVSKRIRMQGFV----EPD-HKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIG 204 ++ K++R++GF+ + D + + WVL +GK+ Y E V +G E P A I Sbjct: 260 IIYKQLRIEGFIVYRWQGDVREKALRDLMKWVL----EGKIQYHEHVTKGFENMPAAFIE 315 Query: 203 LFHGRNVGKQVV 168 + +G N+GK VV Sbjct: 316 MLNGANLGKAVV 327
>QOR_LEIAM (P42865) Probable quinone oxidoreductase (EC 1.6.5.5)| (NADPH:quinone reductase) (P36) Length = 340 Score = 38.1 bits (87), Expect = 0.005 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -2 Query: 368 LVSKRIRMQGFVEPDHKHLYPEYRAWVLPHIKDGKVVYVED--VVEGLEAAPGALIGLFH 195 L+ K + GF P + P+Y A +L ++K G+V D V GL + A+ L+ Sbjct: 269 LLVKSASLNGFFLPQFHDVIPKYMANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYS 328 Query: 194 GRNVGKQVVKL 162 G N GK +V++ Sbjct: 329 GANYGKVLVEI 339
>YNN4_YEAST (P53912) Hypothetical 41.2 kDa protein in FPR1-TOM22 intergenic| region Length = 376 Score = 33.1 bits (74), Expect = 0.16 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = -2 Query: 332 EPDHKHLYPEYRAWVLPHIKDGKVVYVEDVV--EGLEAAPGALIGLFHGRNVGKQVV 168 +P++K ++ ++ P I DG++ ++ V GL+ P L + HGRN G+++V Sbjct: 316 DPEYKEAAIKFIKFINPKINDGEIHHIPVKVYKNGLDDIPQLLDDIKHGRNSGEKLV 372
>ZADH1_PONPY (Q5R806) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 275 KDGKVVYVEDVVEGLEAAPGALIGLFHGRNVGKQVV 168 K+GK+ E V+ GLE A + G N+GKQ+V Sbjct: 308 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343
>ZADH1_HUMAN (Q8N8N7) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 275 KDGKVVYVEDVVEGLEAAPGALIGLFHGRNVGKQVV 168 K+GK+ E V+ GLE A + G N+GKQ+V Sbjct: 308 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343
>ZADH1_MOUSE (Q8VDQ1) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 275 KDGKVVYVEDVVEGLEAAPGALIGLFHGRNVGKQVV 168 K+GK+ E V +GLE A + G NVGKQ+V Sbjct: 308 KEGKLKVKETVAKGLENMGVAFQSMMTGGNVGKQIV 343
>SYGB_XANCP (Q8P3I5) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 698 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/82 (25%), Positives = 32/82 (39%) Frame = -2 Query: 368 LVSKRIRMQGFVEPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEGLEAAPGALIGLFHGR 189 L + I + V D + Y + P D K + ED+ +GLEA L + + Sbjct: 299 LTEQFIGIANIVSKDVAEVAKGYERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQA 358 Query: 188 NVGKQVVKLANPQ*LTHRIRMQ 123 +G K+A L I Q Sbjct: 359 KLGTVADKVARVAALAEAIAPQ 380
>PURA_CARHZ (Q3A8S5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 427 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = -2 Query: 392 LNARNLVYLVSKRIRMQGFVEPDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEG-----LE 228 LN + L+ K ++GF + H Y EY + P+ D + + D +E E Sbjct: 162 LNLKEKNNLLEKIYGVEGFSYDELYHEYLEYAEIIRPYATDTSRL-INDAIESGQKVLFE 220 Query: 227 AAPGALIGLFHG 192 A G L+ L HG Sbjct: 221 GAQGTLLDLDHG 232
>KGUA_THEMA (Q9X215) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 207 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -2 Query: 359 KRIRMQGFVE--PDHKHLYPEYRAWVLPHIKDGKVVYVEDVVEG 234 KR+ F+E H HLY R++V HI +GK V ++ V+G Sbjct: 61 KRVERGEFLEWARVHGHLYGTLRSFVESHINEGKDVVLDIDVQG 104
>MKL2_MOUSE (P59759) MKL/myocardin-like protein 2 (Myocardin-related| transcription factor B) (MRTF-B) Length = 1080 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/97 (23%), Positives = 31/97 (31%) Frame = -1 Query: 399 GGAQRAQPGVPRLQADPHAGVRRAGPQAPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 220 G Q P R+QA PH P A LP Sbjct: 726 GSLQLQTPAQGRVQAQPHVAAATQVPAAALPSALTSALPQKQEAFPQHVLGQPQPVRKVF 785 Query: 219 RSAHRTLPRTQRRQAGCQARQPSVTHTSHPHAVSLTS 109 ++ +RQ G +QP V+ TS+P S T+ Sbjct: 786 TNSAPNTVLQYQRQPGPTNQQPFVSKTSNPALQSRTA 822
>CUEO_YERPE (Q8ZBK0) Blue copper oxidase cueO precursor (Copper efflux oxidase)| Length = 533 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 186 RRQAGCQARQPSVTHTSHPHAVSLTSHQI 100 +RQ QP+ T HPH S T HQ+ Sbjct: 125 KRQVTFAVEQPAATCWFHPHTHSKTGHQV 153
>TLR9_BOVIN (Q5I2M5) Toll-like receptor 9 precursor (CD289 antigen)| Length = 1029 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 272 DGKVVYVEDVVEGLEAAPGALIGL 201 DG Y+ LE APGAL+GL Sbjct: 174 DGNCYYMNPCPRALEVAPGALLGL 197
>EFNB3_MOUSE (O35393) Ephrin-B3 precursor| Length = 340 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -1 Query: 399 GGAQRAQPGVPRLQADPHAGVRRAGPQAPLP 307 G A A+PG + DP + G + PLP Sbjct: 191 GAAHSAEPGRDTIPGDPSSNATSRGAEGPLP 221
>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1| precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta-1-BP-1) (Transforming growth factor beta-1-masking protein, large subunit) Length = 1712 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = -1 Query: 204 TLPRTQRRQAGCQARQPSVT---HTSHPHAVSLTSHQIKRM 91 TLP T Q G + + P H HP S+ HQ+ R+ Sbjct: 455 TLPLTMTNQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRI 495
>CH10_STRGN (Q8VT59) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 93 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +3 Query: 30 QRKQGLLMIASQRHACTCISPFVLFGDLSRTLHADAMCESLRVGELDNLLADVASVEESD 209 + K G +IA HA T + V G RTL + + S++ G+ L+ A VE D Sbjct: 17 EEKVGGFVIAGNSHAATKTAAVVAVGQGVRTLTGELVAPSVKAGD-KVLVESHAGVEVKD 75
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 399 GGAQRAQPGVPRLQADPHAGVRRAGPQAPLP 307 G RA P P+L + R+GP+ PLP Sbjct: 389 GSTSRALPATPQLPSRSGVDSPRSGPRPPLP 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,247,831 Number of Sequences: 219361 Number of extensions: 740433 Number of successful extensions: 2733 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2732 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
