>NPAS1_HUMAN (Q99742) Neuronal PAS domain protein 1 (Neuronal PAS1) (Member of|
           PAS protein 5) (MOP5)
          Length = 590

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -3

Query: 486 WTQALQPAQGQGHRAALPGDHRVLQDHRR*PQAEAGLDPPRQEERREARIPCLTSQSPLP 307
           W Q++    G G     PG+H VL       QAE G   P    +  A + C  + SP P
Sbjct: 379 WLQSVATVAGSGKS---PGEHHVLWVSHVLSQAEGG-QTPLDAFQLPASVACEEASSPGP 434

Query: 306 SPT 298
            PT
Sbjct: 435 EPT 437

>TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)|
          Length = 1163

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 396 PQAEAGLDPPRQEERREARIPCLTSQSPLPS 304
           P ++A   PPR+EER ++  P L  Q  +PS
Sbjct: 410 PASQASATPPRKEERADSSRPYLPRQQDVPS 440

>SOML2_SPAAU (P79894) Somatolactin-2 precursor (SL)|
          Length = 231

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 369 PRQEERREARIPCLTSQSPLPSPTLFY*Q---KAIINLPFLLAKGSHQPLFYLSLEL 208
           P Q +R +A  PC+T   P+PS      Q   K +++   +L +   +PL YL   L
Sbjct: 77  PLQLQRNQAGYPCITKALPIPSSKSEIQQISDKWLLHSVLMLVQSWIEPLVYLQTTL 133

>SOML1_SPAAU (P54863) Somatolactin-1 precursor (SL)|
          Length = 231

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 369 PRQEERREARIPCLTSQSPLPSPTLFY*Q---KAIINLPFLLAKGSHQPLFYLSLEL 208
           P Q +R +A  PC+T   P+PS      Q   K +++   +L +   +PL YL   L
Sbjct: 77  PLQLQRNQAGYPCITKALPIPSSKSEIQQISDKWLLHSVLMLVQSWIEPLVYLQTTL 133

>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)|
            (snRNA-activating protein complex 190 kDa subunit) (SNAPc
            190 kDa subunit) (Proximal sequence element-binding
            transcription factor alpha subunit) (PSE-binding factor
            alpha
          Length = 1469

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 468  PAQGQGHRAALPGDHRVLQDHRR*PQAEAGLDPPRQEERREARIPCLTSQSPLPSP 301
            PA+  G  A +PG+ +V ++    P+  +  DPP  E     R+P      P   P
Sbjct: 1164 PAEADGSVAFVPGEAQVAREIPE-PRTSSHADPPEAEPPWSGRLPAFGGVIPATEP 1218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,420,208
Number of Sequences: 219361
Number of extensions: 1436510
Number of successful extensions: 3913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3910
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)