>YCBX_ECOLI (P75863) Hypothetical protein ycbX|
          Length = 369

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = -2

Query: 432 IKIDKLTFDGVKLCDRCKVPTVNQENGIL--GTEPTETMLTFRSGEVLRPSHKNKQKVYF 259
           I+I  + FD VK C RC   TV+ E G      EP +T+ +FR+ +       +   V F
Sbjct: 191 IRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQ-------DNGDVDF 243

Query: 258 GQNLVCKESVSAKGKGRIVKVGDPVYVLQTYPS 160
           GQNL+ + S        +++VGD V +L T P+
Sbjct: 244 GQNLIARNS-------GVIRVGDEVEILATAPA 269

>TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 417 precursor|
          Length = 713

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/68 (26%), Positives = 24/68 (35%)
 Frame = -2

Query: 417 LTFDGVKLCDRCKVPTVNQENGILGTEPTETMLTFRSGEVLRPSHKNKQKVYFGQNLVCK 238
           LT DG   C  C   T   +NG+   + +    T     +           YF  N  C 
Sbjct: 478 LTIDGASYCSECATTTEYPQNGVCAPKASRATPTCNDSPIQNGVCGTCADNYFKMNGGCY 537

Query: 237 ESVSAKGK 214
           E+V   GK
Sbjct: 538 ETVKYPGK 545

>TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor|
          Length = 667

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = -2

Query: 417 LTFDGVKLCDRCKVPTVNQENGILGTEPTETMLTFRSGEVLRPSHKNKQKVYFGQNLVCK 238
           LT DG   C  C       +NGI  +    T+ T ++  V      +    +   N  C 
Sbjct: 426 LTIDGASYCSECDTQNEYPQNGICTSTTARTVATCKNSNVANGICSSCTNGFLRMNGGCY 485

Query: 237 ESVSAKGK 214
           E+    GK
Sbjct: 486 ETTKFPGK 493

>NUOF_BUCAP (Q8K9Y3) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain F) (NDH-1, chain F)
          Length = 447

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 197 SATRFTFFRHTLLPMKFQPERGLGSTYCICVYVCVEEMTGSVDFVCTLRKF 45
           + T F   +H  LPM F      GS     + + V+  T  +  VC + KF
Sbjct: 296 AGTDFLIEKHLDLPMDFTSIAKAGSRLGTAIAMAVDNKTNMISLVCNIEKF 346

>PYRF_RHIME (Q92SN8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 234

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -2

Query: 378 VPTVNQENGILGTEPTETM-------LTFRSG-EVLRPSHKNKQKVYFGQNLVCKESVSA 223
           +PTV +   I+ T   E +       L F  G +  R    + ++V+    L+  ++  A
Sbjct: 15  LPTVTEAEKIVSTLGEEVLFYKIGYQLAFAGGLDFARDLAASGKQVFLDMKLLDIDNTVA 74

Query: 222 KGKGRIVKVGDPVYVLQTYPSS 157
           KG   IVK+G  +  L  YP +
Sbjct: 75  KGVENIVKMGVSMLTLHAYPKA 96

>VPS1_SCHPO (Q9URZ5) Vacuolar sorting protein 1|
          Length = 678

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 76  DPVISSTHT*TQIQYVLPSPRSGWNFIGRRVCLKNVNRVADLDDPPFALC*YRFLADQIL 255
           DP      T   +  V  S  SG NF G     KN  R+A ++ PP  L     L+D+  
Sbjct: 530 DPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRASTTLSDREK 589

Query: 256 PKVDLLLILV 285
              +++ +L+
Sbjct: 590 TDTEVIKLLI 599

>PYRF_AGRT5 (P58638) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 235

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = -2

Query: 399 KLCDRCKVPTVNQENGILGTEPTETM-------LTFRSG-EVLRPSHKNKQKVYFGQNLV 244
           KL     VPTV Q   I+     E +       L F  G E  R   ++ +KV+    L+
Sbjct: 6   KLIVGLDVPTVQQAEDIVSKIGDEVLFYKIGYQLVFAGGLEFARDLVQSGKKVFLDMKLL 65

Query: 243 CKESVSAKGKGRIVKVGDPVYVLQTYPSS 157
             ++  A G   I ++G  +  L  YP +
Sbjct: 66  DIDNTVASGVENIARMGMSMLTLHAYPKA 94

>RS4E_METVA (P14023) 30S ribosomal protein S4e|
          Length = 244

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
 Frame = -2

Query: 432 IKIDKLTFDGVK---------LCDRCKVPTVNQ-------ENGILGTEPTET----MLTF 313
           I++ K+  DGVK         L D   +P +N+       ENG +  + TE     +   
Sbjct: 66  IQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKKTEKTGVKLCKI 125

Query: 312 RSGEVLRPSHKNKQKVYFGQNLVCKESVSAKGKGRIVKVGDPVYV 178
            +  V++  H  +  ++ G+N + K + + K +  I K GD V V
Sbjct: 126 VNKTVIKGGHI-QLNLHDGRNQIVKVANALKAEEDIYKTGDSVLV 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,898,424
Number of Sequences: 219361
Number of extensions: 1329815
Number of successful extensions: 3165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3165
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)