ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25m20 |
|---|---|
| Clone Library Name | barley_pub |
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 33.1 bits (74), Expect = 0.68 Identities = 30/84 (35%), Positives = 39/84 (46%) Frame = +3 Query: 345 SSE*TCKSKPSLSTQIIFTSNA*KSDST*ILYIL*TSSACSLFISSTTLSAKFRRGSGSA 524 SS T S S ST TS + S ST + S+ S SST+ S + S S+ Sbjct: 234 SSSLTSTSSSSTSTSQSSTSTSSSSTST-------SPSSTSTSSSSTSTSPSSKSTSASS 286 Query: 525 SLYSDGTTHTRPSLKSSMCKIRST 596 + S +T T PSL SS + ST Sbjct: 287 TSTSSYSTSTSPSLTSSSPTLAST 310
>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)| Length = 567 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Frame = +1 Query: 226 GWHNSFPPPMHDETSC*MTISPPSGQRP---ALRKVSEQRRCLPQNERASQN---QVCLP 387 G H PPP+ T S PSGQ P R + ++RR P+ R Q + P Sbjct: 330 GLHARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGP 389 Query: 388 KSSLHPMPENLIRRKYCISYERPQHVRYSFPQQRFQQSFEG 510 S++ PE +R+ +R S P QS++G Sbjct: 390 PSAVRNQPEPQEQRERA-HLQRALQASVSPPSPSPNQSYQG 429
>MATK_TRIWO (Q8MCL7) Maturase K (Intron maturase)| Length = 506 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRLFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_TRITL (Q8MCL9) Maturase K (Intron maturase)| Length = 506 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILIQILRYWVKDVPFFHLLRLFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_TRIGC (Q8MCN2) Maturase K (Intron maturase)| Length = 506 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRLFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_TRIBE (Q5YJV6) Maturase K (Intron maturase)| Length = 506 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRLFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_TRIAO (Q8MCN9) Maturase K (Intron maturase)| Length = 506 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRLFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>PRIS_ARCFU (O29516) Probable DNA primase small subunit (EC 2.7.7.-)| Length = 335 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = -2 Query: 574 EDFNEGRVWVVPSEYSDAEPDPLRNFAESVVEEMNSEHAEDVHRIYSIYVESDFQALDVK 395 ED E + W+ D + D L A+S + + E + ++ ++ + +DF D+K Sbjct: 80 EDKMENKGWLGADLIFDIDADHLPVKAQSFEKALEMAKRE-IKKLTAV-LRADFGIRDMK 137 Query: 394 MIWVDRLGFDLHVHSEE 344 + + G+ +HVH EE Sbjct: 138 IYFSGGRGYHVHVHDEE 154
>MATK_TRIRP (Q8MCM4) Maturase K (Intron maturase)| Length = 506 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILIQILRYWVKDVPFFHLLRLFLSHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_TRIMI (Q8MCM7) Maturase K (Intron maturase)| Length = 506 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L +F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRVFLYHFCNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>LIN36_CAEEL (P34427) Protein lin-36 (Abnormal cell lineage protein 36)| Length = 962 Score = 30.0 bits (66), Expect = 5.8 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +1 Query: 142 TDHGGIVSNTDITP-----SM*PSSRIVPSQTLGWHNSFPPPMHDETSC*MTISPPSGQR 306 T G ++ + +TP S P I+ + ++SFP + ET MT +PP G+ Sbjct: 74 TSSGEVLDESQVTPTKQASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMTRTPPDGEH 133 Query: 307 PALRKVSEQR 336 + ++S R Sbjct: 134 LEVYRMSNGR 143
>PRIS_THEVO (Q979L5) Probable DNA primase small subunit (EC 2.7.7.-)| Length = 333 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = -2 Query: 556 RVWVVPSEYSDAEPDPLRNFAESVVEEMNSEHAEDVHRIYSIYVESD--FQALDVKMIWV 383 ++W D + D L + EEM + E R+ + ++ SD D+++ + Sbjct: 86 KIWEGADLIFDLDSDHLPGAEKMTYEEMLNSIKEQTKRLVNKFLVSDLGISEKDIRIYFS 145 Query: 382 DRLGFDLHVHSEEGIFAVRIPFSRQVSD 299 G+ +HV SE+ ++ + R+++D Sbjct: 146 GSRGYHVHVSSED-VYPLGSDARREITD 172
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 29.3 bits (64), Expect = 9.9 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Frame = +1 Query: 205 IVPSQTLGWHNSFPPPM--HDETSC*MTISPPSGQRPALRKVSEQRRCLPQNERASQ--- 369 IVP QT PP+ H + + ++PP G P +++ S Q + LPQ + SQ Sbjct: 725 IVPRQT--------PPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMN 776 Query: 370 --NQVCLPKSSLHPMPENLIRRKYC 438 N P S P+ + + C Sbjct: 777 VTNIPLAPSSGQAPVSQAQMSSSSC 801
>MATK_SILLA (Q589A9) Maturase K (Intron maturase)| Length = 503 Score = 29.3 bits (64), Expect = 9.9 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED FL +N + YP HL I + + + +++L +F + N N+ Sbjct: 131 FPFLEDKFLHLNSVLDILLPYPTHLEILVQTLRYWIRDASSLHLLRLFLYEYHNWNSLFI 190 Query: 500 VSKGIWF 520 K I+F Sbjct: 191 PKKSIYF 197
>OTCC_STRSU (Q8GG79) Ornithine carbamoyltransferase, catabolic (EC 2.1.3.3)| (OTCase) Length = 337 Score = 29.3 bits (64), Expect = 9.9 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +2 Query: 350 RMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAI 472 ++N+++ K+ N +++ CL D NTVY +V F++ Sbjct: 253 QVNMELVKKAENENLIFLHCLPAFHDTNTVYGKDVAEKFSV 293
>MATK_TRIWI (Q8MCL8) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 9.9 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V V ++L F HF N N F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDVPFFHLLRWFLYHFXNWNCFIP 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_PEA (Q5YJU1) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 9.9 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED F +N + YP HL I + + V ++L +F HF N N+F Sbjct: 133 FPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDAPFFHLLRLFLYHFCNWNSFIT 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>MATK_LATAP (Q8MCS1) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 9.9 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +2 Query: 323 YPNSEDAFLRMNVQVKTKSVYPNHLYIQCLKI*FDVNTVYPMNVLSMFAIHFLN-NAFSK 499 +P ED +N + YP HL I + + V V ++L +F HF N N+F Sbjct: 133 FPFLEDKLTYLNYVADIRIPYPIHLEILVQILRYWVKDVPFFHLLRLFLYHFCNRNSFIT 192 Query: 500 VSKGI 514 K I Sbjct: 193 TKKSI 197
>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP40] Length = 1850 Score = 29.3 bits (64), Expect = 9.9 Identities = 30/102 (29%), Positives = 46/102 (45%) Frame = +3 Query: 318 KGIRTAKMPSSE*TCKSKPSLSTQIIFTSNA*KSDST*ILYIL*TSSACSLFISSTTLSA 497 K R SS + KS S +SN+ K S+ +SS+ S SS++ S+ Sbjct: 1159 KQARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSS----SSSSSSRSSSSSSSSS 1214 Query: 498 KFRRGSGSASLYSDGTTHTRPSLKSSMCKIRSTDIRYKRSSS 623 + S S+S S ++ +R S KSS S+ +SSS Sbjct: 1215 SNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSS 1256 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,467,780 Number of Sequences: 219361 Number of extensions: 2039805 Number of successful extensions: 5613 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5604 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
