ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25m19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009248.1| Triticum aestivum clone wlk1.pk0025.e2:fis, full ... 426 e-116
2gb|AY105904.1| Zea mays PCO126705 mRNA sequence 165 2e-37
3ref|XM_549860.1| Oryza sativa (japonica cultivar-group), mRNA 163 7e-37
4dbj|AK071405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
6dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
7gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 44 0.42
8emb|AL353717.13| Human DNA sequence from clone RP11-562M8 on chr... 42 1.7
9gb|AY170316.1| Porcine lymphotropic herpesvirus 3 isolate 489 lo... 42 1.7
10gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell ... 42 1.7
11emb|AL831731.6| Mouse DNA sequence from clone RP23-442K11 on chr... 42 1.7
12gb|AC153740.3| Colobus guereza clone CH272-157M1, complete sequence 40 6.6
13gb|AY433117.1| Aedes aegypti ASAP ID: 36447 vesicular transmembr... 40 6.6
14gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete... 40 6.6
15gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complet... 40 6.6
16gb|AC107720.16| Mus musculus chromosome 5, clone RP23-188F20, co... 40 6.6
17gb|AY552062.1| Aedes aegypti putative coated vesicle membrane pr... 40 6.6
18ref|XM_449941.1| Candida glabrata CBS138 hypothetical protein (C... 40 6.6
19gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete ... 40 6.6
20emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chr... 40 6.6
21emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.6
22gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete s... 40 6.6
23gb|AC153020.5| Mus musculus BAC clone RP23-88P1 from chromosome ... 40 6.6
24gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, comp... 40 6.6
25gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosom... 40 6.6
26gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, com... 40 6.6
27gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, co... 40 6.6
28gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Can... 40 6.6
29gb|AC095350.8| Homo sapiens 12 BAC RP11-662M24 (Roswell Park Can... 40 6.6
30gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65... 40 6.6 
>gb|BT009248.1| Triticum aestivum clone wlk1.pk0025.e2:fis, full insert mRNA sequence
          Length = 1924

 Score =  426 bits (215), Expect = e-116
 Identities = 234/239 (97%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                        
Query: 253  ggacagaatt-aactactcagtccatgtagcgcccaacatctttgacataaaactgtaac 311
            |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1624 ggacagaattgaactactcagtccatgtagcgcccaacatcttcgacataaaactgtaac 1565

                                                                        
Query: 312  ggtccgcagcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 371
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ggtccgcggcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 1505

                                                                        
Query: 372  ggtcaatgcggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 431
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 ggtcaatgcgaccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 1445

                                                                       
Query: 432  catgttgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 catgctgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatga 1386



 Score =  228 bits (115), Expect = 1e-56
 Identities = 170/187 (90%), Gaps = 1/187 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gcttcattggtccatttcaagtttccaacaatatttttctaagcagaaacacacaccc-t 63
            |||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| |
Sbjct: 1819 gcttcattggtccatttcaagttttcaacagcatttttctaagcagaaacacacacccct 1760

                                                                        
Query: 64   tccacatatggaagaatatataggctcgggtaagcttgcaccacacaaacattggaagtg 123
            | |||||| |||||||||||||||||| | ||||||||||| ||||| |||||| |||||
Sbjct: 1759 ttcacatacggaagaatatataggctccgataagcttgcacaacacagacattgtaagtg 1700

                                                                        
Query: 124  ttgtcaacttcaaagagttgtgatacttgaactcaaaaactgttcagcagctgaagcgat 183
            |||| | ||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1699 ttgtaagcttcaaagaattgtagtacttgaactcaaaaactgttcagcagctgaagcgat 1640

                   
Query: 184  aacaatc 190
            | |||||
Sbjct: 1639 agcaatc 1633
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>gb|AY105904.1| Zea mays PCO126705 mRNA sequence
          Length = 2579

 Score =  165 bits (83), Expect = 2e-37
 Identities = 200/239 (83%)
 Strand = Plus / Minus

                                                                        
Query: 252  tggacagaattaactactcagtccatgtagcgcccaacatctttgacataaaactgtaac 311
            |||||| |||| |||| |||||||| | ||| || ||||| |||| |||||| || || |
Sbjct: 2288 tggacaaaattcactattcagtccacgaagcccctaacatttttgccataaagctatatc 2229

                                                                        
Query: 312  ggtccgcagcctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgc 371
             ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||||||||| |
Sbjct: 2228 tgtctgcagcttcgtcaatcattttttgagttggcctgccagctccatgccctgacttcc 2169

                                                                        
Query: 372  ggtcaatgcggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaaga 431
            | |||||||| ||||||||||| || ||||||||||||| |||| |||| || |||| ||
Sbjct: 2168 gatcaatgcgaccaattattggattcgtctgcgggctgtcctcagtgctggtacacagga 2109

                                                                       
Query: 432  catgttgcattgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
            |||| ||||  || || || |||||||| || ||||||||||||||||| || ||||||
Sbjct: 2108 catgctgcaaagttgctaataacttcagtgaatgcaatggcacaacacgatcgtcatga 2050
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>ref|XM_549860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2639

 Score =  163 bits (82), Expect = 7e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 321  cctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgcggtcaatgc 380
            |||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||||
Sbjct: 2261 cctcatcaatcatttttttagttggtctgccagctccatgccctgacttgacgtcaatgc 2202

                                                                        
Query: 381  ggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaagacatgttgca 440
            | ||||||||||| |||  ||| ||  | | |||||||||||||||||||||||  ||||
Sbjct: 2201 gaccaattattggattgacctgtggtgtatcctcaatgctagtgcacaagacatactgca 2142

                                                              
Query: 441  ttgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
             ||| || ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 2141 gtgttgctaacaacttcaatgagtgcaatggcacaacacgatcatcatga 2092
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>dbj|AK071405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090K22, full
            insert sequence
          Length = 3375

 Score =  163 bits (82), Expect = 7e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 321  cctcatcaatcaattttttagtcggcctgccagctccatgccctgacttgcggtcaatgc 380
            |||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||||
Sbjct: 2997 cctcatcaatcatttttttagttggtctgccagctccatgccctgacttgacgtcaatgc 2938

                                                                        
Query: 381  ggccaattattgggttggtctgcgggctgttctcaatgctagtgcacaagacatgttgca 440
            | ||||||||||| |||  ||| ||  | | |||||||||||||||||||||||  ||||
Sbjct: 2937 gaccaattattggattgacctgtggtgtatcctcaatgctagtgcacaagacatactgca 2878

                                                              
Query: 441  ttgtagccaacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
             ||| || ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 2877 gtgttgctaacaacttcaatgagtgcaatggcacaacacgatcatcatga 2828
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                          
Query: 334    ttttttagtcggcctgccagctccatgccctgacttgcggtcaatgcggccaattattgg 393
              ||||||||| || ||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 447776 ttttttagttggtctgccagctccatgccctgacttgacgtcaatgcgaccaattattgg 447717

                                                       
Query: 394    gttggtctgcgggctgttctcaatgctagtgcacaagacat 434
               |||  ||| ||  | | |||||||||||||||||||||||
Sbjct: 447716 attgacctgtggtgtatcctcaatgctagtgcacaagacat 447676



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                        
Query: 449    aacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
              ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 446465 aacaacttcaatgagtgcaatggcacaacacgatcatcatga 446424
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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 334   ttttttagtcggcctgccagctccatgccctgacttgcggtcaatgcggccaattattgg 393
             ||||||||| || ||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 87977 ttttttagttggtctgccagctccatgccctgacttgacgtcaatgcgaccaattattgg 87918

                                                      
Query: 394   gttggtctgcgggctgttctcaatgctagtgcacaagacat 434
              |||  ||| ||  | | |||||||||||||||||||||||
Sbjct: 87917 attgacctgtggtgtatcctcaatgctagtgcacaagacat 87877



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 449   aacaacttcagcgagtgcaatggcacaacacggtcatcatga 490
             ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 86666 aacaacttcaatgagtgcaatggcacaacacgatcatcatga 86625
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 469   tggcacaacacggtcatcatga 490
             ||||||||||||||||||||||
Sbjct: 89428 tggcacaacacggtcatcatga 89449
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>emb|AL353717.13| Human DNA sequence from clone RP11-562M8 on chromosome 9 Contains a
             novel pseudogene, a argininosuccinate synthetase (ASS)
             (CTLN1) pseudogene, the APTX gene for aprataxin, a
             transcription elongation factor A (SII), 1 pseudogene
             (GTF2SP) (TCEA1P) and 2 CpG islands, complete sequence
          Length = 120533

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19550 cttccacatatggaagtatatatag 19574



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19515 cttccacatatggaagtatatatag 19539



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19480 cttccacatatggaagtatatatag 19504



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19445 cttccacatatggaagtatatatag 19469



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19410 cttccacatatggaagtatatatag 19434



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19375 cttccacatatggaagtatatatag 19399



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19340 cttccacatatggaagtatatatag 19364



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19305 cttccacatatggaagtatatatag 19329



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19270 cttccacatatggaagtatatatag 19294



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19235 cttccacatatggaagtatatatag 19259



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19200 cttccacatatggaagtatatatag 19224



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19165 cttccacatatggaagtatatatag 19189



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19130 cttccacatatggaagtatatatag 19154



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    cttccacatatggaagaatatatag 86
             |||||||||||||||| ||||||||
Sbjct: 19095 cttccacatatggaagtatatatag 19119
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>gb|AY170316.1| Porcine lymphotropic herpesvirus 3 isolate 489 long unique region,
             partial sequence
          Length = 60326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    caagtttccaacaatattttt 42
             |||||||||||||||||||||
Sbjct: 55632 caagtttccaacaatattttt 55612
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>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162063

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134259 cttccacatatggaagtatatatag 134283



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134224 cttccacatatggaagtatatatag 134248



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134189 cttccacatatggaagtatatatag 134213



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134154 cttccacatatggaagtatatatag 134178



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134119 cttccacatatggaagtatatatag 134143



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134084 cttccacatatggaagtatatatag 134108



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134049 cttccacatatggaagtatatatag 134073



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 134014 cttccacatatggaagtatatatag 134038



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133979 cttccacatatggaagtatatatag 134003



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133944 cttccacatatggaagtatatatag 133968



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133909 cttccacatatggaagtatatatag 133933



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133874 cttccacatatggaagtatatatag 133898



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133839 cttccacatatggaagtatatatag 133863



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133804 cttccacatatggaagtatatatag 133828



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133769 cttccacatatggaagtatatatag 133793



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133734 cttccacatatggaagtatatatag 133758



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133699 cttccacatatggaagtatatatag 133723



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133664 cttccacatatggaagtatatatag 133688



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133629 cttccacatatggaagtatatatag 133653



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133594 cttccacatatggaagtatatatag 133618



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133559 cttccacatatggaagtatatatag 133583



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     cttccacatatggaagaatatatag 86
              |||||||||||||||| ||||||||
Sbjct: 133524 cttccacatatggaagtatatatag 133548
to top
>emb|AL831731.6| Mouse DNA sequence from clone RP23-442K11 on chromosome 2, complete
              sequence
          Length = 165232

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     cagaaacacacacccttccac 68
              |||||||||||||||||||||
Sbjct: 127319 cagaaacacacacccttccac 127339
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>gb|AC153740.3| Colobus guereza clone CH272-157M1, complete sequence
          Length = 200890

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aagtttccaacaatattttt 42
             ||||||||||||||||||||
Sbjct: 27343 aagtttccaacaatattttt 27362
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>gb|AY433117.1| Aedes aegypti ASAP ID: 36447 vesicular transmembrane mRNA
          sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 tttccaacaatatttttcta 45
          ||||||||||||||||||||
Sbjct: 30 tttccaacaatatttttcta 49
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>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence
          Length = 191467

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaacacacacccttccacat 70
              ||||||||||||||||||||
Sbjct: 109525 aaacacacacccttccacat 109506
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>gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complete sequence
          Length = 177736

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aaacacacacccttccacat 70
             ||||||||||||||||||||
Sbjct: 15821 aaacacacacccttccacat 15802
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>gb|AC107720.16| Mus musculus chromosome 5, clone RP23-188F20, complete sequence
          Length = 206182

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   caacatctttgacataaaac 305
             ||||||||||||||||||||
Sbjct: 85028 caacatctttgacataaaac 85047
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>gb|AY552062.1| Aedes aegypti putative coated vesicle membrane protein mRNA,
          complete cds
          Length = 910

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 tttccaacaatatttttcta 45
          ||||||||||||||||||||
Sbjct: 60 tttccaacaatatttttcta 79
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>ref|XM_449941.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13739g) partial
            mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  tcaaagagttgtgatacttg 152
            ||||||||||||||||||||
Sbjct: 1060 tcaaagagttgtgatacttg 1041
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>gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   gtgcacaagacatgttgcat 441
             ||||||||||||||||||||
Sbjct: 72262 gtgcacaagacatgttgcat 72281
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>emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ16613) and the
             5' end of one variant of the OPN3 gene for opsin 3
             (encephalopsin, panopsin), complete sequence
          Length = 40220

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 33    caatatttttctaagcagaaacacacac 60
             ||||||||||||||| ||||| ||||||
Sbjct: 37420 caatatttttctaagtagaaatacacac 37393
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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     tcaaagagttgtgatacttg 152
               ||||||||||||||||||||
Sbjct: 1347355 tcaaagagttgtgatacttg 1347374
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>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    atcaatcaattttttagtcg 344
              ||||||||||||||||||||
Sbjct: 110120 atcaatcaattttttagtcg 110101
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>gb|AC153020.5| Mus musculus BAC clone RP23-88P1 from chromosome 13, complete sequence
          Length = 200635

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tgggttggtctgcgggctgt 410
             ||||||||||||||||||||
Sbjct: 12010 tgggttggtctgcgggctgt 11991
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>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence
          Length = 195169

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    gaattaactactcagtccat 277
              ||||||||||||||||||||
Sbjct: 187786 gaattaactactcagtccat 187805
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>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence
          Length = 159755

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    tgggttggtctgcgggctgt 410
              ||||||||||||||||||||
Sbjct: 148754 tgggttggtctgcgggctgt 148735
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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  caacatctttgacataaaac 305
            ||||||||||||||||||||
Sbjct: 4931 caacatctttgacataaaac 4912
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>gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, complete sequence
          Length = 227676

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    gtaagcttgcaccacacaaacatt 116
             |||||| |||||||||||||||||
Sbjct: 58066 gtaagcctgcaccacacaaacatt 58089
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>gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   tggacagaattaactactcagtcc 275
             ||||||||||||| ||||||||||
Sbjct: 20472 tggacagaattaattactcagtcc 20495
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>gb|AC095350.8| Homo sapiens 12 BAC RP11-662M24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 129055

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 66     cacatatggaagaatatataggct 89
              ||||||||||||||||||| ||||
Sbjct: 114340 cacatatggaagaatatatgggct 114363
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>gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65 of 73 of the complete
             sequence
          Length = 307324

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aaacacacacccttccacat 70
             ||||||||||||||||||||
Sbjct: 50824 aaacacacacccttccacat 50805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,547,930
Number of Sequences: 3902068
Number of extensions: 4547930
Number of successful extensions: 122599
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122433
Number of HSP's gapped (non-prelim): 161
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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