Clone Information

BLAST Search Result

Clone Name	rbags26b18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_480307.1\| Oryza sativa (japonica cultivar-group), mRNA	246	8e-62
2	dbj\|AK101266.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	238	2e-59
3	ref\|NM_191363.1\| Oryza sativa (japonica cultivar-group), predic...	161	3e-36
4	dbj\|AK120433.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	147	5e-32
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
7	dbj\|AP003239.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
8	dbj\|AP005606.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
9	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
10	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
11	dbj\|AP006751.2\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
12	dbj\|AP005864.2\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
13	dbj\|AP005621.2\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
14	gb\|AC018897.4\|AC018897 Homo sapiens BAC clone RP11-575J11 from 1...	42	2.2
15	gb\|AC026458.8\| Homo sapiens chromosome 16 clone RP11-10K17, comp...	42	2.2
16	dbj\|AP002984.3\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	42	2.2
17	gb\|U66061.1\| Human germline T-cell receptor beta chain TCRBV17S1...	40	8.8
18	gb\|AC159614.7\| Mus musculus chromosome 1, clone RP24-305O23, com...	40	8.8
19	ref\|XM_882762.1\| PREDICTED: Bos taurus similar to karyopherin be...	40	8.8
20	gb\|AC146435.3\| Pan troglodytes BAC clone RP43-15P23 from 7, comp...	40	8.8
21	gb\|AC147331.3\| Pan troglodytes BAC clone RP43-10H17 from 7, comp...	40	8.8
22	ref\|NG_001333.1\| Homo sapiens T cell receptor beta locus (TRB@) ...	40	8.8
23	gb\|AC115881.8\| Mus musculus chromosome 6, clone RP24-365K16, com...	40	8.8
24	emb\|AL731567.6\| Human DNA sequence from clone RP11-67C2 on chrom...	40	8.8
25	emb\|AL160400.20\| Human DNA sequence from clone RP11-367G6 on chr...	40	8.8
26	emb\|AL121969.12\|HSJ214M20 Human DNA sequence from clone RP1-214M...	40	8.8
27	emb\|AL691468.12\| Mouse DNA sequence from clone RP23-20K13 on chr...	40	8.8
28	gb\|AC156980.9\| Mus musculus chromosome 1, clone RP23-191A12, com...	40	8.8
29	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	40	8.8
30	gb\|AC103769.2\| Homo sapiens chromosome 8, clone RP11-110G21, com...	40	8.8
31	gb\|AC105185.5\| Homo sapiens chromosome 8, clone RP11-1113C11, co...	40	8.8
32	gb\|AC105091.3\| Homo sapiens chromosome 8, clone RP11-479P21, com...	40	8.8
33	gb\|AC097522.4\| Homo sapiens BAC clone RP11-588F10 from 4, comple...	40	8.8
34	gb\|AC104597.3\| Homo sapiens BAC clone RP11-114L10 from 7, comple...	40	8.8
35	gb\|AC099395.2\| Homo sapiens BAC clone CTD-2152B9 from 7, complet...	40	8.8
36	gb\|AC064807.7\| Homo sapiens chromosome 8, clone RP11-546K22, com...	40	8.8
37	gb\|AC067932.9\| Homo sapiens chromosome 8, clone RP11-78F5, compl...	40	8.8
38	gb\|AC073200.6\| Homo sapiens BAC clone RP11-261L16 from 7, comple...	40	8.8
39	ref\|NG_001077.1\| Homo sapiens argininosuccinate synthetase pseud...	40	8.8
40	gb\|AC154854.2\| Mus musculus BAC clone RP23-23O4 from chromosome ...	40	8.8
41	gb\|AC147598.2\| Gallus gallus BAC clone CH261-121K14 from chromos...	40	8.8
42	dbj\|AP006092.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	8.8
43	gb\|K01845.1\|HUMASA1PS Human argininosuccinate synthetase pseudog...	40	8.8

>ref|XM_480307.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1927

 Score =  246 bits (124), Expect = 8e-62
 Identities = 220/252 (87%)
 Strand = Plus / Minus

                                                                        
Query: 395  tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
            ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 1408 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 1349

                                                                        
Query: 455  ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
            | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 1348 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 1289

                                                                        
Query: 515  tgtaggggtgctcaaaccttcctttctctgattcgtcagcttctaaaagattttcttctg 574
            | |||||||| ||||| ||||||||||||| |   ||||| |||  ||||||||||||||
Sbjct: 1288 tataggggtgatcaaatcttcctttctctggtatttcagcctctgcaagattttcttctg 1229

                                                                        
Query: 575  cgacatatgcaacaaggagttctggatcagcatatacatcaaccagcacttgataaaaag 634
            | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1228 caacatatgcaacaaggagttctggatcagcatatacatcaacaaggacttgataaaaag 1169

                        
Query: 635  ggtgatttggtc 646
            | ||||| ||||
Sbjct: 1168 gttgattcggtc 1157

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>dbj|AK101266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032L11, full
            insert sequence
          Length = 1922

 Score =  238 bits (120), Expect = 2e-59
 Identities = 219/252 (86%)
 Strand = Plus / Minus

                                                                        
Query: 395  tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
            ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 1406 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 1347

                                                                        
Query: 455  ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
            | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 1346 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 1287

                                                                        
Query: 515  tgtaggggtgctcaaaccttcctttctctgattcgtcagcttctaaaagattttcttctg 574
            | |||||||| ||||| ||||||||||||| |   ||||| |||  ||||||||||||||
Sbjct: 1286 tataggggtgatcaaatcttcctttctctggtatttcagcctctgcaagattttcttctg 1227

                                                                        
Query: 575  cgacatatgcaacaaggagttctggatcagcatatacatcaaccagcacttgataaaaag 634
            | ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct: 1226 caacatatgcaacaaggagttcttgatcagcatatacatcaacaaggacttgataaaaag 1167

                        
Query: 635  ggtgatttggtc 646
            | ||||| ||||
Sbjct: 1166 gttgattcggtc 1155

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>ref|NM_191363.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Minus

                                                                        
Query: 395  tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
            ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 1090 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 1031

                                                                        
Query: 455  ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
            | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 1030 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 971

                                                                        
Query: 515  tgtaggggtgctcaaaccttcctttctctgattcgtcagcttctaaaagattttcttctg 574
            | |||||||| ||||| |||||||||||||||   |||||||||  ||||||||||||||
Sbjct: 970  tataggggtgatcaaatcttcctttctctgatatttcagcttctgcaagattttcttctg 911

             
Query: 575  c 575
            |
Sbjct: 910  c 910

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>dbj|AK120433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E20, full
            insert sequence
          Length = 1800

 Score =  147 bits (74), Expect = 5e-32
 Identities = 156/182 (85%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                        
Query: 395  tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctc-a 453
            ||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 1331 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcaa 1272

                                                                        
Query: 454  cggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcg 513
            || || ||||| | |||||||||||||| |||  ||||||| ||| |||| || ||||| 
Sbjct: 1271 cgaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattca 1212

                                                                        
Query: 514  gtgtaggggtgctcaaaccttcctttctctgattcgtcagcttctaaaagattttcttct 573
             | |||||||| ||||| |||||||||||||||   |||||||||  |||||||||||||
Sbjct: 1211 atataggggtgatcaaatcttcctttctctgatatttcagcttctgcaagattttcttct 1152

              
Query: 574  gc 575
            ||
Sbjct: 1151 gc 1150



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                   
Query: 578 catatgcaacaaggagttctggatcagcatatacatcaac 617
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 catatgcaacaaggagttctggatcagcatatacatcaac 887

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 8e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                           
Query: 395     tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
               ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 4235633 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 4235574

                                                                           
Query: 455     ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
               | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 4235573 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 4235514

                                     
Query: 515     tgtaggggtgctcaaaccttcc 536
               | |||||||| ||||| |||||
Sbjct: 4235513 tataggggtgatcaaatcttcc 4235492



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                       
Query: 578     catatgcaacaaggagttctggatcagcatatacatcaac 617
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4234856 catatgcaacaaggagttctggatcagcatatacatcaac 4234817

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 8e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                            
Query: 395      tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
                ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 32171162 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 32171221

                                                                            
Query: 455      ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
                | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 32171222 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 32171281

                                      
Query: 515      tgtaggggtgctcaaaccttcc 536
                | |||||||| ||||| |||||
Sbjct: 32171282 tataggggtgatcaaatcttcc 32171303



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                        
Query: 578      catatgcaacaaggagttctggatcagcatatacatcaac 617
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 32171645 catatgcaacaaggagttctggatcagcatatacatcaac 32171684



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 536      ctttctctgattcgtcagcttctaaaagattttcttctgc 575
                |||||||||||   |||||||||  |||||||||||||||
Sbjct: 32171382 ctttctctgatatttcagcttctgcaagattttcttctgc 32171421

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>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0403C05
          Length = 151085

 Score =  123 bits (62), Expect = 8e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                         
Query: 395   tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
             ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 41915 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 41974

                                                                         
Query: 455   ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
             | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 41975 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 42034

                                   
Query: 515   tgtaggggtgctcaaaccttcc 536
             | |||||||| ||||| |||||
Sbjct: 42035 tataggggtgatcaaatcttcc 42056



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 42398 catatgcaacaaggagttctggatcagcatatacatcaac 42437



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 536   ctttctctgattcgtcagcttctaaaagattttcttctgc 575
             |||||||||||   |||||||||  |||||||||||||||
Sbjct: 42135 ctttctctgatatttcagcttctgcaagattttcttctgc 42174

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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1590_E05
          Length = 148205

 Score =  123 bits (62), Expect = 8e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                          
Query: 395    tgccatcgtcgtcattttcatctccagaagcttcataacgtggctggtcatacttctcac 454
              ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 135256 tgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcac 135197

                                                                          
Query: 455    ggagttgcttcacaggaatgaagtcccgagccatgtcctcaccataaaataggaattcgg 514
              | || ||||| | |||||||||||||| |||  ||||||| ||| |||| || |||||  
Sbjct: 135196 gaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaa 135137

                                    
Query: 515    tgtaggggtgctcaaaccttcc 536
              | |||||||| ||||| |||||
Sbjct: 135136 tataggggtgatcaaatcttcc 135115



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                      
Query: 578    catatgcaacaaggagttctggatcagcatatacatcaac 617
              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134479 catatgcaacaaggagttctggatcagcatatacatcaac 134440

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 578      catatgcaacaaggagttctggatcagcatatacatcaac 617
                |||||||||||||||||||||||||| | |||||||||||
Sbjct: 20124678 catatgcaacaaggagttctggatcaccgtatacatcaac 20124717



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 536      ctttctctgattcgtcagcttctaaaagattttcttctgc 575
                ||||||||||| | ||||||| |  |||||||||||||||
Sbjct: 20123931 ctttctctgatacttcagcttatgcaagattttcttctgc 20123970

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             complete sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 42440 catatgcaacaaggagttctggatcaccatatatatcaac 42479



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 36448 catatgcaacaaggagttctggatcaccatatatatcaac 36409

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>dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1460A05
          Length = 143371

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 42440 catatgcaacaaggagttctggatcaccatatatatcaac 42479



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 36448 catatgcaacaaggagttctggatcaccatatatatcaac 36409

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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0047P18
          Length = 169128

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 578   catatgcaacaaggagttctggatcagcatatacatcaac 617
             |||||||||||||||||||||||||| | |||||||||||
Sbjct: 18178 catatgcaacaaggagttctggatcaccgtatacatcaac 18217



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 536   ctttctctgattcgtcagcttctaaaagattttcttctgc 575
             ||||||||||| | ||||||| |  |||||||||||||||
Sbjct: 17431 ctttctctgatacttcagcttatgcaagattttcttctgc 17470

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>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0681G01, complete sequence
          Length = 184118

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 578    catatgcaacaaggagttctggatcagcatatacatcaac 617
              |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 178102 catatgcaacaaggagttctggatcaccatatatatcaac 178063



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 578    catatgcaacaaggagttctggatc 602
              |||||||||||||||||||||||||
Sbjct: 184094 catatgcaacaaggagttctggatc 184118

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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 555   ttctaaaagattttcttctgc 575
             |||||||||||||||||||||
Sbjct: 47087 ttctaaaagattttcttctgc 47107

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>gb|AC026458.8| Homo sapiens chromosome 16 clone RP11-10K17, complete sequence
          Length = 153873

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 212   cctctcattgcaggtttttgt 232
             |||||||||||||||||||||
Sbjct: 83623 cctctcattgcaggtttttgt 83643

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>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete
              sequence
          Length = 153042

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 555    ttctaaaagattttcttctgc 575
              |||||||||||||||||||||
Sbjct: 104676 ttctaaaagattttcttctgc 104696

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>gb|U66061.1| Human germline T-cell receptor beta chain TCRBV17S1A1T, TCRBV2S1,
              TCRBV10S1P, TCRBV29S1P, TCRBV19S1P, TCRBV15S1,
              TCRBV11S1A1T, HVB relic, TCRBV28S1P, TCRBV34S1, TCRBV14S1,
              TCRBV3S1, TCRBV4S1A1T, TRY4, TRY5, TRY6, TRY7, TRY8,
              TCRBD1, TCRBJ1S1, TCRBJ1S2, TCRBJ1S3, TCRBJ1S4, TCRBJ1S5,
              TCRBJ1S6, TCRBC1, TCRBD2, TCRBJ2S1, TCRBJ2S2, TCRBJ2S3,
              TCRBJ2S4, TCRBJ2S5, TCRBJ2S6, TCRBJ2S7, TCRBC2,
              TCRBV20S1A1N2 genes from bases 452324 to 684973 (section 3
              of 3)
          Length = 232650

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    gtcattttcatctccagaag 424
              ||||||||||||||||||||
Sbjct: 223975 gtcattttcatctccagaag 223956

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>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence
          Length = 156924

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aaaagggcaggaggaagttg 154
              ||||||||||||||||||||
Sbjct: 148136 aaaagggcaggaggaagttg 148117

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>ref|XM_882762.1| PREDICTED: Bos taurus similar to karyopherin beta 1, transcript
            variant 6 (LOC507804), mRNA
          Length = 3352

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  catcgtcgtcattttcatct 417
            ||||||||||||||||||||
Sbjct: 1033 catcgtcgtcattttcatct 1014

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>gb|AC146435.3| Pan troglodytes BAC clone RP43-15P23 from 7, complete sequence
          Length = 192805

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    aataaggaatgttcttagaa 371
              ||||||||||||||||||||
Sbjct: 161720 aataaggaatgttcttagaa 161701

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>gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, complete sequence
          Length = 189220

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    aataaggaatgttcttagaa 371
              ||||||||||||||||||||
Sbjct: 126190 aataaggaatgttcttagaa 126171

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>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    gtcattttcatctccagaag 424
              ||||||||||||||||||||
Sbjct: 676298 gtcattttcatctccagaag 676279

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>gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, complete sequence
          Length = 164311

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   taaggaatgttcttagaaaa 373
             ||||||||||||||||||||
Sbjct: 51518 taaggaatgttcttagaaaa 51499

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>emb|AL731567.6| Human DNA sequence from clone RP11-67C2 on chromosome 10 Contains the
             ALOX5 gene for arachidonate 5-lipoxygenase, a novel gene,
             the 3' end of a gene for cellular modulator of immune
             recognition (c-MIR) and five CpG islands, complete
             sequence
          Length = 129266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   ccatgtcctcaccataaaat 504
             ||||||||||||||||||||
Sbjct: 94756 ccatgtcctcaccataaaat 94775

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>emb|AL160400.20| Human DNA sequence from clone RP11-367G6 on chromosome 6 Contains a
             peptidylprolyl isomerase A (cyclophilin A) (PPIA)
             pseudogene and an argininosuccinate synthetase (ASS)
             (ASS1,CTLN1) pseudogene, complete sequence
          Length = 58408

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 461   gcttcacaggaatgaagtcccgag 484
             ||||||| ||||||||||||||||
Sbjct: 50659 gcttcactggaatgaagtcccgag 50636

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>emb|AL121969.12|HSJ214M20 Human DNA sequence from clone RP1-214M20 on chromosome 6p12.1-12.3
             Contains the GSTA3 gene for glutathione S-transferase A3,
             a glutathione S-transferase A family pseudogene and the 3'
             end of the GSTA4 gene for glutathione S-transferase A4,
             complete sequence
          Length = 107429

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    agtatgatgctatgtacata 30
             ||||||||||||||||||||
Sbjct: 67607 agtatgatgctatgtacata 67626

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>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the
             3' end of a novel gene (4933412J03Rik), a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, the Tnfsf15 gene for tumor necrosis factor
             (ligand) superfamily member 15 and the 3' end of the
             Tnfsf8 for tumor necrosis factor (ligand) superfamily
             member 8, complete sequence
          Length = 212420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   gtaggggtgctcaaaccttc 535
             ||||||||||||||||||||
Sbjct: 66051 gtaggggtgctcaaaccttc 66070



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   gtaggggtgctcaaaccttc 535
             ||||||||||||||||||||
Sbjct: 65999 gtaggggtgctcaaaccttc 66018

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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    aaaagggcaggaggaagttg 154
              ||||||||||||||||||||
Sbjct: 192560 aaaagggcaggaggaagttg 192579

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     aaagggcaggaggaagttgc 155
               ||||||||||||||||||||
Sbjct: 1187175 aaagggcaggaggaagttgc 1187194

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>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence
          Length = 138097

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    aggtttttgtgtcttcttgc 242
              ||||||||||||||||||||
Sbjct: 137621 aggtttttgtgtcttcttgc 137640

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>gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, complete sequence
          Length = 152141

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    caaaagggcaggaggaagtt 153
              ||||||||||||||||||||
Sbjct: 141550 caaaagggcaggaggaagtt 141569

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>gb|AC105091.3| Homo sapiens chromosome 8, clone RP11-479P21, complete sequence
          Length = 173888

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    caaaagggcaggaggaagtt 153
              ||||||||||||||||||||
Sbjct: 153364 caaaagggcaggaggaagtt 153345

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>gb|AC097522.4| Homo sapiens BAC clone RP11-588F10 from 4, complete sequence
          Length = 207883

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   tcattttcatctccagaagc 425
             ||||||||||||||||||||
Sbjct: 16760 tcattttcatctccagaagc 16741

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>gb|AC104597.3| Homo sapiens BAC clone RP11-114L10 from 7, complete sequence
          Length = 161425

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   gtcattttcatctccagaag 424
             ||||||||||||||||||||
Sbjct: 74671 gtcattttcatctccagaag 74652

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>gb|AC099395.2| Homo sapiens BAC clone CTD-2152B9 from 7, complete sequence
          Length = 67826

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  gtcattttcatctccagaag 424
            ||||||||||||||||||||
Sbjct: 2989 gtcattttcatctccagaag 3008

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>gb|AC064807.7| Homo sapiens chromosome 8, clone RP11-546K22, complete sequence
          Length = 203270

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    aggtttttgtgtcttcttgc 242
              ||||||||||||||||||||
Sbjct: 142972 aggtttttgtgtcttcttgc 142953

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>gb|AC067932.9| Homo sapiens chromosome 8, clone RP11-78F5, complete sequence
          Length = 163777

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   aggtttttgtgtcttcttgc 242
             ||||||||||||||||||||
Sbjct: 60158 aggtttttgtgtcttcttgc 60177

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>gb|AC073200.6| Homo sapiens BAC clone RP11-261L16 from 7, complete sequence
          Length = 165929

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   aataaggaatgttcttagaa 371
             ||||||||||||||||||||
Sbjct: 27499 aataaggaatgttcttagaa 27480

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>ref|NG_001077.1| Homo sapiens argininosuccinate synthetase pseudogene 1 (ASSP1) on
            chromosome 6
          Length = 1877

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 461  gcttcacaggaatgaagtcccgag 484
            ||||||| ||||||||||||||||
Sbjct: 1071 gcttcactggaatgaagtcccgag 1094

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>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 393    agtgccatcgtcgtcattttcatc 416
              |||||||||||| |||||||||||
Sbjct: 130426 agtgccatcgtcatcattttcatc 130449

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>gb|AC147598.2| Gallus gallus BAC clone CH261-121K14 from chromosome unknown, complete
             sequence
          Length = 197142

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 69    caaatatacaatgaatatccatca 92
             |||||||||||||||||| |||||
Sbjct: 76742 caaatatacaatgaatatacatca 76719

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>dbj|AP006092.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157b,
           complete sequence
          Length = 28160

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 600 atcagcatatacatcaacca 619
           ||||||||||||||||||||
Sbjct: 735 atcagcatatacatcaacca 754

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>gb|K01845.1|HUMASA1PS Human argininosuccinate synthetase pseudogene 1
          Length = 1877

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 461  gcttcacaggaatgaagtcccgag 484
            ||||||| ||||||||||||||||
Sbjct: 1071 gcttcactggaatgaagtcccgag 1094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,249,392
Number of Sequences: 3902068
Number of extensions: 6249392
Number of successful extensions: 121902
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121657
Number of HSP's gapped (non-prelim): 242
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result