ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26b16 |
|---|---|
| Clone Library Name | barley_pub |
>K0406_MOUSE (Q91V83) Protein KIAA0406 homolog| Length = 1085 Score = 32.7 bits (73), Expect = 0.22 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = -3 Query: 304 KFMAEPXVGHRMTASMVKEASDWFDRFL*KAAVRFLTNMAGGCSTMHNSWSATHGLNKFV 125 K A+P V HR+ A M+ +DW K A+ F+ + C ++H W L +FV Sbjct: 257 KAQAKPVVEHRVAALMIHREADWVKSTGDKLAI-FIKKII-DCVSVHPHWKVRLELVEFV 314 Query: 124 ---LVTDSASLLTETG 86 L+ + SL+ TG Sbjct: 315 EILLLKCTQSLVESTG 330
>BMPH_STRPU (P98069) Bone morphogenetic protein 1 homolog precursor (EC| 3.4.24.-) (SUBMP) Length = 639 Score = 32.0 bits (71), Expect = 0.38 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 182 ARHVRQEPNRRLLQEPVEPVARFLHHARRHPVPDXRLRH 298 ARH R++ RR+LQE HH ++ + + ++RH Sbjct: 60 ARHNREQYRRRILQERQTRTTGARHHIKKRTIEEAKVRH 98
>YCF2_PINTH (P41653) Protein ycf2| Length = 2054 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = -3 Query: 136 NKFVLVTDSASLLTETG---IGWPSFVAITSSTYYLISTCRSXISNKN 2 N F +V D L T T IGW F++++ ST ++++ ISN N Sbjct: 599 NYFKIVFDPIELCTNTNRDSIGWSVFLSLSESTVKILNSKFDIISNLN 646
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 167 HGTTAARHVRQEPNRRLLQEPVEPVARFLHHARRHP 274 HG + RH +EP RR + + R H AR HP Sbjct: 3658 HGRHSGRHAGEEPGRRAAKPHARDMGR--HEARPHP 3691
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 167 HGTTAARHVRQEPNRRLLQEPVEPVARFLHHARRHPVP 280 HG + RH +EP RR + + R H AR H P Sbjct: 3649 HGRHSGRHTGEEPGRRAAKPHARDLGR--HEARPHSQP 3684
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +2 Query: 167 HGTTAARHVRQEPNRRLLQEPVEPVARFLHHARRHP 274 HG + RH +EP RR + + R H R HP Sbjct: 3644 HGRHSGRHAGEEPGRRAARPHARDMGR--HETRPHP 3677
>PHEB_FREDI (P05097) C-phycoerythrin beta chain| Length = 184 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 361 EPASKAAEAYKEAGSADKFKFMAEPXVGHRMTASMVKEASDWFDRFL 221 + A+ + EA + K + M P V R AS+V EAS +FDR + Sbjct: 135 QAAAHIQDTPSEARAGAKLRKMGTPVVEDRC-ASLVAEASSYFDRVI 180
>ANPRB_ANGJA (P55202) Atrial natriuretic peptide receptor B precursor (ANP-B)| (ANPRB) (GC-B) (Guanylate cyclase) (EC 4.6.1.2) (NPR-B) (Atrial natriuretic peptide B-type receptor) Length = 1050 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = -3 Query: 241 DWFDRFL*KAAVRFLTNMAGGCSTMHNSWSATHG-LNKFVLVTDSASLLTETGIGWPSF 68 DW R+ + ++ G + +HNS+ +HG L V DS +L T G SF Sbjct: 620 DWMFRY------SLINDIVKGMNFLHNSYIGSHGNLKSSNCVVDSRFVLKITDYGLASF 672
>TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G-protein| coupled receptor 70) (Gm148) Length = 841 Score = 27.3 bits (59), Expect = 9.4 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = -3 Query: 325 AGSADKFKFMAEPXVGHRMTASMVKEA--SDWFDRFL*KAAVR-----FLTNMAGGCSTM 167 AGS + F EP A ++++A + F FL VR + + T Sbjct: 614 AGSGSLYGFFGEPT----RPACLLRQALFALGFTIFLSCLTVRSFQLIIIFKFSTKVPTF 669 Query: 166 HNSWSATHGLNKFVLVTDSASLL 98 +++W HG FV+++ +A LL Sbjct: 670 YHAWVQNHGAGLFVMISSAAQLL 692
>TS1R1_RAT (Q9Z0R8) Taste receptor type 1 member 1 precursor (G-protein| coupled receptor 70) Length = 840 Score = 27.3 bits (59), Expect = 9.4 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Frame = -3 Query: 325 AGSADKFKFMAEPXVGHRMTASMVKEA--SDWFDRFL*KAAVR-----FLTNMAGGCSTM 167 AGS + F EP V A ++++ S F FL +R + + T Sbjct: 613 AGSCSFYSFFGEPTV----PACLLRQPLFSLGFAIFLSCLTIRSFQLVIIFKFSTKVPTF 668 Query: 166 HNSWSATHGLNKFVLVTDSASLL 98 + +W+ HG FV+V+ + LL Sbjct: 669 YRTWAQNHGAGLFVIVSSTVHLL 691
>MSRAB_STRGC (Q9LAM9) Peptide methionine sulfoxide reductase msrA/msrB (EC| 1.8.4.6) [Includes: Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase); Peptide methionine sulfoxide reductase msrB] Length = 311 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = -3 Query: 199 LTNMAGGCSTMHNSWSATHGLNKFVLVTDSASLLT-----ETGIGWPSF 68 +T ++ HN+++AT +V VT L E+G GWPSF Sbjct: 186 VTQLSATERPFHNAYNATFEEGIYVDVTTGEPLFFAGDKFESGCGWPSF 234
>ANPRB_BOVIN (P46197) Atrial natriuretic peptide receptor B precursor (ANP-B)| (ANPRB) (GC-B) (Guanylate cyclase B) (EC 4.6.1.2) (NPR-B) (Atrial natriuretic peptide B-type receptor) Length = 1047 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = -3 Query: 241 DWFDRFL*KAAVRFLTNMAGGCSTMHNSWSATHG-LNKFVLVTDSASLLTETGIGWPSF 68 DW R+ + ++ G + +HNS A+HG L V DS +L T G SF Sbjct: 616 DWMFRY------SLINDLVKGMAFLHNSIIASHGSLKSSNCVVDSRFVLKITDYGLASF 668 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,639,436 Number of Sequences: 219361 Number of extensions: 931235 Number of successful extensions: 2903 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2901 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
