ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26b16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK068888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
2ref|XM_550350.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
3ref|XM_387420.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 4.8
4gb|AY298859.1| Xiphophorus maculatus Rex3 retrotransposon, Rex2 ... 40 4.8
5emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment ... 40 4.8
6dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 4.8
7dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 4.8

>dbj|AK068888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E15, full
            insert sequence
          Length = 1232

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 118/145 (81%)
 Strand = Plus / Minus

                                                                        
Query: 217  tctacaggaaccggtcgaaccagtcgctcgcttccttcaccatgctcgccgtcatccggt 276
            |||| ||||| || || ||||| || || ||||||||||||||| |||| |||||  | |
Sbjct: 1135 tctaaaggaagcgatcaaaccaatcacttgcttccttcaccatgttcgctgtcatttgat 1076

                                                                        
Query: 277  gcccgactnccggctccgccatgaacttgaacttatcggcagaaccagcttctttataag 336
            | || | | | ||||| || |||||| |||||||||| ||||||||| |||||| |||||
Sbjct: 1075 ggccaattcctggctctgcaatgaacatgaacttatctgcagaaccaacttcttcataag 1016

                                     
Query: 337  cctcagcagctttggaggcaggttc 361
            ||| ||||||| ||||  |||||||
Sbjct: 1015 ccttagcagctctggaaacaggttc 991



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>ref|XM_550350.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1293

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                        
Query: 246  gcttccttcaccatgctcgccgtcatccggtgcccgactnccggctccgccatgaacttg 305
            ||||||||||||||| |||| |||||  | || || | | | ||||| || |||||| ||
Sbjct: 1265 gcttccttcaccatgttcgctgtcatttgatggccaattcctggctctgcaatgaacatg 1206

                                                                    
Query: 306  aacttatcggcagaaccagcttctttataagcctcagcagctttggaggcaggttc 361
            |||||||| ||||||||| |||||| |||||||| ||||||| ||||  |||||||
Sbjct: 1205 aacttatctgcagaaccaacttcttcataagccttagcagctctggaaacaggttc 1150



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>ref|XM_387420.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07244.1)
            partial mRNA
          Length = 2790

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  accgaaccgccgccttctac 221
            ||||||||||||||||||||
Sbjct: 1540 accgaaccgccgccttctac 1559



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>gb|AY298859.1| Xiphophorus maculatus Rex3 retrotransposon, Rex2 retrotransposon, and
             Rex1 retrotransposon, complete sequence
          Length = 48940

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   cagaaccagcttctttataagcct 339
             |||||||||||||||||| |||||
Sbjct: 18038 cagaaccagcttctttattagcct 18015



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>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24
          Length = 307050

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    tccgccatgaacttgaactt 310
              ||||||||||||||||||||
Sbjct: 182534 tccgccatgaacttgaactt 182515



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>dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT37I11, TM0302a,
             complete sequence
          Length = 96704

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gagaacaaatttattgaggc 141
             ||||||||||||||||||||
Sbjct: 73208 gagaacaaatttattgaggc 73189



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>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
             complete sequence
          Length = 110985

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gagaacaaatttattgaggc 141
             ||||||||||||||||||||
Sbjct: 59083 gagaacaaatttattgaggc 59064


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,117,615
Number of Sequences: 3902068
Number of extensions: 2117615
Number of successful extensions: 34600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34593
Number of HSP's gapped (non-prelim): 9
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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