| Clone Name | rbags26b16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E15, full insert sequence Length = 1232 Score = 75.8 bits (38), Expect = 9e-11 Identities = 118/145 (81%) Strand = Plus / Minus Query: 217 tctacaggaaccggtcgaaccagtcgctcgcttccttcaccatgctcgccgtcatccggt 276 |||| ||||| || || ||||| || || ||||||||||||||| |||| ||||| | | Sbjct: 1135 tctaaaggaagcgatcaaaccaatcacttgcttccttcaccatgttcgctgtcatttgat 1076 Query: 277 gcccgactnccggctccgccatgaacttgaacttatcggcagaaccagcttctttataag 336 | || | | | ||||| || |||||| |||||||||| ||||||||| |||||| ||||| Sbjct: 1075 ggccaattcctggctctgcaatgaacatgaacttatctgcagaaccaacttcttcataag 1016 Query: 337 cctcagcagctttggaggcaggttc 361 ||| ||||||| |||| ||||||| Sbjct: 1015 ccttagcagctctggaaacaggttc 991
>ref|XM_550350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 73.8 bits (37), Expect = 3e-10 Identities = 96/116 (82%) Strand = Plus / Minus Query: 246 gcttccttcaccatgctcgccgtcatccggtgcccgactnccggctccgccatgaacttg 305 ||||||||||||||| |||| ||||| | || || | | | ||||| || |||||| || Sbjct: 1265 gcttccttcaccatgttcgctgtcatttgatggccaattcctggctctgcaatgaacatg 1206 Query: 306 aacttatcggcagaaccagcttctttataagcctcagcagctttggaggcaggttc 361 |||||||| ||||||||| |||||| |||||||| ||||||| |||| ||||||| Sbjct: 1205 aacttatctgcagaaccaacttcttcataagccttagcagctctggaaacaggttc 1150
>ref|XM_387420.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07244.1) partial mRNA Length = 2790 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 accgaaccgccgccttctac 221 |||||||||||||||||||| Sbjct: 1540 accgaaccgccgccttctac 1559
>gb|AY298859.1| Xiphophorus maculatus Rex3 retrotransposon, Rex2 retrotransposon, and Rex1 retrotransposon, complete sequence Length = 48940 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cagaaccagcttctttataagcct 339 |||||||||||||||||| ||||| Sbjct: 18038 cagaaccagcttctttattagcct 18015
>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24 Length = 307050 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tccgccatgaacttgaactt 310 |||||||||||||||||||| Sbjct: 182534 tccgccatgaacttgaactt 182515
>dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT37I11, TM0302a, complete sequence Length = 96704 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gagaacaaatttattgaggc 141 |||||||||||||||||||| Sbjct: 73208 gagaacaaatttattgaggc 73189
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gagaacaaatttattgaggc 141 |||||||||||||||||||| Sbjct: 59083 gagaacaaatttattgaggc 59064 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,117,615 Number of Sequences: 3902068 Number of extensions: 2117615 Number of successful extensions: 34600 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 34593 Number of HSP's gapped (non-prelim): 9 length of query: 363 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 341 effective length of database: 17,147,199,772 effective search space: 5847195122252 effective search space used: 5847195122252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)