ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
2dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
3dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
4dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
5dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
6gb|AY112572.1| Zea mays CL32597_1 mRNA sequence 151 3e-33
7emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chro... 44 0.55
8gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complet... 42 2.2
9gb|AC101778.9| Mus musculus chromosome 1, clone RP24-125B8, comp... 40 8.5
10emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 40 8.5
11ref|XM_822909.1| Trypanosoma brucei TREU927 hypothetical protein... 40 8.5
12gb|AC122032.4| Mus musculus BAC clone RP24-402M18 from chromosom... 40 8.5
13emb|BX537160.6| Human DNA sequence from clone RP11-1023P23 on ch... 40 8.5
14emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 40 8.5
15gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosom... 40 8.5
16gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-3... 40 8.5
17gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Can... 40 8.5
18emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in... 40 8.5
19emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 40 8.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                           
Query: 208     ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 267
               ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 8971054 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 8971113

                                                                           
Query: 268     aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 327
               ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 8971114 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 8971173

                                                                           
Query: 328     gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 387
               ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 8971174 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 8971233

                                            
Query: 388     tttggatggaacgatcttcgagcaggcca 416
               ||||||||||| |||||||||||||||||
Sbjct: 8971234 tttggatggaatgatcttcgagcaggcca 8971262



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 586     tcttttattccttcagctcgcttgctagtgtcccatcttt 625
               ||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 8971426 tctttgataccttcggcttgcttgctagtgtcccatcttt 8971465
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>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0084K06
          Length = 177895

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                         
Query: 208   ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 267
             ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 18372 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 18431

                                                                         
Query: 268   aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 327
             ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 18432 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 18491

                                                                         
Query: 328   gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 387
             ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 18492 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 18551

                                          
Query: 388   tttggatggaacgatcttcgagcaggcca 416
             ||||||||||| |||||||||||||||||
Sbjct: 18552 tttggatggaatgatcttcgagcaggcca 18580



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 586   tcttttattccttcagctcgcttgctagtgtcccatcttt 625
             ||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 18744 tctttgataccttcggcttgcttgctagtgtcccatcttt 18783
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>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528B02
          Length = 144495

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                          
Query: 208    ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 267
              ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 136683 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 136742

                                                                          
Query: 268    aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 327
              ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 136743 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 136802

                                                                          
Query: 328    gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 387
              ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 136803 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 136862

                                           
Query: 388    tttggatggaacgatcttcgagcaggcca 416
              ||||||||||| |||||||||||||||||
Sbjct: 136863 tttggatggaatgatcttcgagcaggcca 136891



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 586    tcttttattccttcagctcgcttgctagtgtcccatcttt 625
              ||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 137055 tctttgataccttcggcttgcttgctagtgtcccatcttt 137094
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>dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D20, full
            insert sequence
          Length = 1994

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 267
            ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 1764 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 1705

                                                                        
Query: 268  aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 327
            ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 1704 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 1645

                                                                        
Query: 328  gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 387
            ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 1644 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 1585

                                         
Query: 388  tttggatggaacgatcttcgagcaggcca 416
            ||||||||||| |||||||||||||||||
Sbjct: 1584 tttggatggaatgatcttcgagcaggcca 1556



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 586  tcttttattccttcagctcgcttgctagtgtcccatcttt 625
            ||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 1392 tctttgataccttcggcttgcttgctagtgtcccatcttt 1353
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>dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H05, full
            insert sequence
          Length = 1222

 Score =  216 bits (109), Expect = 7e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 267
            ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 1015 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 956

                                                                        
Query: 268  aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 327
            ||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||| 
Sbjct: 955  aatgcattaacaacgttctgcagtcgggcaacaaactcgattagaagggaggcaaatgtg 896

                                                                        
Query: 328  gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 387
            ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 895  gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 836

                                         
Query: 388  tttggatggaacgatcttcgagcaggcca 416
            ||||||||||| |||||||||||||||||
Sbjct: 835  tttggatggaatgatcttcgagcaggcca 807



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 586 tcttttattccttcagctcgcttgctagtgtcccatcttt 625
           ||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 643 tctttgataccttcggcttgcttgctagtgtcccatcttt 604
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>gb|AY112572.1| Zea mays CL32597_1 mRNA sequence
          Length = 480

 Score =  151 bits (76), Expect = 3e-33
 Identities = 139/160 (86%)
 Strand = Plus / Plus

                                                                       
Query: 219 aggctcctccacagggtccttgaaattagccttctcactcagctcctcgaatgcgttaac 278
           ||||||| ||||||| ||||| || |||||||||||||||| ||| || |||||||||||
Sbjct: 321 aggctccaccacaggatccttaaagttagccttctcactcaactcttcaaatgcgttaac 380

                                                                       
Query: 279 aacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgttgccaaggacaa 338
           ||| |||||||| | |||||||||||| || ||||| || |||||||| |||||||||||
Sbjct: 381 aacattctgtagtctggcaacaaactcaatcaggagtgatgcaaatgtagccaaggacaa 440

                                                   
Query: 339 ggcacttgcactttcatatgtttttgactcctcgtcttca 378
           |||||| || |||||||||||||  || ||||| ||||||
Sbjct: 441 ggcactcgcgctttcatatgtttgggaatcctcatcttca 480
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>emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chromosome 4, complete
              sequence
          Length = 199071

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 573    tacattcatggcatcttttatt 594
              ||||||||||||||||||||||
Sbjct: 101959 tacattcatggcatcttttatt 101938
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>gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complete sequence
          Length = 151721

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 542   cattcttattttcttttgcgacggc 566
             |||| ||||||||||||||||||||
Sbjct: 89560 cattgttattttcttttgcgacggc 89584
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>gb|AC101778.9| Mus musculus chromosome 1, clone RP24-125B8, complete sequence
          Length = 173893

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ctttcatatgtttttgactc 368
             ||||||||||||||||||||
Sbjct: 44010 ctttcatatgtttttgactc 43991
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>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tcttctcattgcacacacac 39
             ||||||||||||||||||||
Sbjct: 17836 tcttctcattgcacacacac 17855
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>ref|XM_822909.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.61.1190)
            partial mRNA
          Length = 4938

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  tgaaattagccttctcactc 258
            ||||||||||||||||||||
Sbjct: 3879 tgaaattagccttctcactc 3898
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>gb|AC122032.4| Mus musculus BAC clone RP24-402M18 from chromosome 1, complete sequence
          Length = 161153

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ctttcatatgtttttgactc 368
             ||||||||||||||||||||
Sbjct: 10553 ctttcatatgtttttgactc 10534
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>emb|BX537160.6| Human DNA sequence from clone RP11-1023P23 on chromosome 1 Contains the
             5' end of the TAS1R2 gene for taste receptor, type 1,
             member 2 and the 3' end of the ALDH4A1 gene for aldehyde
             dehydrogenase 4 family, member A1, complete sequence
          Length = 17606

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   catcttttattccttcagct 603
             ||||||||||||||||||||
Sbjct: 12589 catcttttattccttcagct 12570
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>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
             sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    gtccaaaattattaaacaaa 85
             ||||||||||||||||||||
Sbjct: 24310 gtccaaaattattaaacaaa 24329
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>gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosome 1, complete sequence
          Length = 186662

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   ctttcatatgtttttgactc 368
             ||||||||||||||||||||
Sbjct: 47027 ctttcatatgtttttgactc 47046
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>gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-39i23, complete
             sequence
          Length = 131165

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   aatcatatcggctaagaaac 474
             ||||||||||||||||||||
Sbjct: 54062 aatcatatcggctaagaaac 54043
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>gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 59907

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   ctcattcttattttcttttg 559
             ||||||||||||||||||||
Sbjct: 53164 ctcattcttattttcttttg 53145
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>emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in linkage group 22,
              complete sequence
          Length = 190269

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    acagatctgcatattttagc 185
              ||||||||||||||||||||
Sbjct: 147786 acagatctgcatattttagc 147767
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>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
              sequence
          Length = 209714

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    ctcattcttattttcttttg 559
              ||||||||||||||||||||
Sbjct: 161333 ctcattcttattttcttttg 161314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,795,474
Number of Sequences: 3902068
Number of extensions: 5795474
Number of successful extensions: 104523
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104452
Number of HSP's gapped (non-prelim): 71
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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