>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -3

Query: 526  KVTFGEEELAYQIGETTEILSRGRLCATPHCVQAPSSENASNVERSTFAMFMQPDWNETL 347
            KV +G + + Y+   TT+++       T H V    +   +N E+ +    + P +N + 
Sbjct: 5197 KVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPTMANQEKYSTIYKLHPSFNVSD 5256

Query: 346  NFPSEIPYHQ 317
             + + +PY+Q
Sbjct: 5257 AYANLVPYYQ 5266

>FZO_DROSI (Q9N6P4) Transmembrane GTPase fzo (EC 3.6.5.-) (Protein fuzzy|
           onions) (Fragment)
          Length = 454

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +2

Query: 179 LCLHWGHFSTPHRSNPRESCLPLVILVH----QSL*VLSKRKRSVWWNQL--LVVRNFTW 340
           L LH   F T    N  + CLPL  LVH    Q L  L K K S+    L  + +R+F W
Sbjct: 281 LPLHSSPFRTQKLRNGHKKCLPLPPLVHGNHWQMLESLVKSKGSLGTVLLGAMAIRSFNW 340

Query: 341 KVKRLI 358
            +  ++
Sbjct: 341 PIVMIL 346

>LIPA_SHEON (Q8EHQ6) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 321

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 339 GKLSVSFQSGCMNIAKVERSTFEAFSLLGA-----CTQCGVAHRRPL 464
           G  SV  ++ C N+A+        F +LGA     C  C VAH RPL
Sbjct: 63  GLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPL 109

>LIPA_VIBVY (Q7MN17) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 321

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +3

Query: 348 SVSFQSGCMNIAKVERSTFEAFSLLGA-----CTQCGVAHRRPL 464
           SV  ++ C N+A+        F +LGA     C  C VAH RPL
Sbjct: 66  SVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPL 109

>LIPA_VIBVU (Q8DFD1) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 321

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +3

Query: 348 SVSFQSGCMNIAKVERSTFEAFSLLGA-----CTQCGVAHRRPL 464
           SV  ++ C N+A+        F +LGA     C  C VAH RPL
Sbjct: 66  SVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPL 109

>LIPA_VIBPA (Q87RR1) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 321

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +3

Query: 348 SVSFQSGCMNIAKVERSTFEAFSLLGA-----CTQCGVAHRRPL 464
           SV  ++ C N+A+        F +LGA     C  C VAH RPL
Sbjct: 66  SVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPL 109

>GSH1_YEAST (P32477) Glutamate--cysteine ligase (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)
          Length = 678

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 148 SCLQIHFQVPRKHKKIYRYSKLHNFRTV 65
           SCLQ+ FQ P  +K  Y Y  L NF  +
Sbjct: 265 SCLQVTFQAPNINKARYLYDALVNFAPI 292

>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6781

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -3

Query: 526  KVTFGEEELAYQIGETTEILSRGRLCATPHCVQAPSSENASNVERSTFAMFMQPDWNETL 347
            K  +  + + Y+   TT+++       T H VQ   +   +N ER +    + P +N   
Sbjct: 5229 KAEYDNDAVTYKTTATTKLVPGMVFVLTSHNVQPLRAPTIANQERYSTIHKLHPAFNIPE 5288

Query: 346  NFPSEIPYHQ 317
             + S +PY+Q
Sbjct: 5289 AYSSLVPYYQ 5298

>LIPA_PHOLL (Q7N767) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 321

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 339 GKLSVSFQSGCMNIAKVERSTFEAFSLLGA-----CTQCGVAHRRPL 464
           G  SV  ++ C N+A+        F +LGA     C  C VAH RP+
Sbjct: 63  GLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPM 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,017,741
Number of Sequences: 219361
Number of extensions: 1338663
Number of successful extensions: 3408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3408
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)