ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U41273.1| Caenorhabditis elegans cosmid C26B9, complete sequence 42 2.0
2gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, comp... 42 2.0
3gb|AC093804.3| Homo sapiens BAC clone RP11-326C15 from 4, comple... 42 2.0
4dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.0
5gb|BC076683.1| Xenopus tropicalis glycerol-3-phosphate dehydroge... 40 7.9
6ref|XM_467703.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.9
7gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, comp... 40 7.9
8gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome... 40 7.9
9gb|AC127578.4| Mus musculus BAC clone RP23-428L14 from chromosom... 40 7.9
10gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chrom... 40 7.9
11gb|AC128662.4| Mus musculus BAC clone RP24-440E3 from chromosome... 40 7.9
12emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 i... 40 7.9
13emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chr... 40 7.9
14ref|NM_001006807.1| Xenopus tropicalis glycerol-3-phosphate dehy... 40 7.9
15emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 40 7.9
16emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, B... 40 7.9
17emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, B... 40 7.9
18emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in... 40 7.9
19gb|AC012319.6| Homo sapiens chromosome 19 clone LLNLF-67E10, com... 40 7.9
20gb|AC011505.6| Homo sapiens chromosome 19 clone CTD-2081K17, com... 40 7.9
21gb|AC020944.4| Homo sapiens chromosome 19 clone LLNLF-123D5, com... 40 7.9
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
23gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, comple... 40 7.9
24emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 i... 40 7.9
25emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, c... 40 7.9
26gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, compl... 40 7.9
27dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
28emb|CR761150.2| Xenopus tropicalis finished cDNA, clone TEgg031l16 40 7.9
29emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chro... 40 7.9
30emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chro... 40 7.9

>gb|U41273.1| Caenorhabditis elegans cosmid C26B9, complete sequence
          Length = 24378

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   gtgaaaacatgattacatgat 139
             |||||||||||||||||||||
Sbjct: 14645 gtgaaaacatgattacatgat 14625



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>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   tttccatggaactaaatattc 439
             |||||||||||||||||||||
Sbjct: 70917 tttccatggaactaaatattc 70897



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>gb|AC093804.3| Homo sapiens BAC clone RP11-326C15 from 4, complete sequence
          Length = 177708

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 485   ctgctgctgactgatgtctctttgg 509
             ||||||||||||| |||||||||||
Sbjct: 29703 ctgctgctgactgttgtctctttgg 29727



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>dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB565H3, complete
             sequence
          Length = 101002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   tttccatggaactaaatattc 439
             |||||||||||||||||||||
Sbjct: 22328 tttccatggaactaaatattc 22348



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>gb|BC076683.1| Xenopus tropicalis glycerol-3-phosphate dehydrogenase 1-like, mRNA
           (cDNA clone MGC:79676 IMAGE:6980612), complete cds
          Length = 1861

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 551 accagctaaaggcacatgtg 570
           ||||||||||||||||||||
Sbjct: 358 accagctaaaggcacatgtg 377



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>ref|XM_467703.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 189

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 491 ctgactgatgtctctttgga 510
           ||||||||||||||||||||
Sbjct: 19  ctgactgatgtctctttgga 38



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>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence
          Length = 199094

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atcttttattagcctagagt 33
              ||||||||||||||||||||
Sbjct: 157631 atcttttattagcctagagt 157612



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>gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome 6, complete sequence
          Length = 222363

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    taaatattggtgaggtatcc 535
              ||||||||||||||||||||
Sbjct: 160344 taaatattggtgaggtatcc 160325



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>gb|AC127578.4| Mus musculus BAC clone RP23-428L14 from chromosome 15, complete sequence
          Length = 206410

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    agtctcagaaaagcccagta 392
              ||||||||||||||||||||
Sbjct: 131334 agtctcagaaaagcccagta 131315



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>gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chromosome unknown, complete
              sequence
          Length = 182426

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    ctggtgcgtctttccatgga 428
              ||||||||||||||||||||
Sbjct: 102881 ctggtgcgtctttccatgga 102862



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>gb|AC128662.4| Mus musculus BAC clone RP24-440E3 from chromosome 6, complete sequence
          Length = 134729

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   taaatattggtgaggtatcc 535
             ||||||||||||||||||||
Sbjct: 64092 taaatattggtgaggtatcc 64073



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>emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 in linkage group 7,
              complete sequence
          Length = 168537

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    atgtgaaaacatgattacat 136
              ||||||||||||||||||||
Sbjct: 137330 atgtgaaaacatgattacat 137311



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>emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chromosome 1 Contains
            part of the LPHN2 gene for latrophilin 2, complete
            sequence
          Length = 60193

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 445  gcatctcaaagtatcatcag 464
            ||||||||||||||||||||
Sbjct: 3541 gcatctcaaagtatcatcag 3522



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>ref|NM_001006807.1| Xenopus tropicalis glycerol-3-phosphate dehydrogenase 1-like
           (gpd1l), mRNA
          Length = 1861

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 551 accagctaaaggcacatgtg 570
           ||||||||||||||||||||
Sbjct: 358 accagctaaaggcacatgtg 377



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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caagattcttaaaccctaat 91
             ||||||||||||||||||||
Sbjct: 40951 caagattcttaaaccctaat 40932



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>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project)
          Length = 97714

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caagattcttaaaccctaat 91
             ||||||||||||||||||||
Sbjct: 65982 caagattcttaaaccctaat 65963



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>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project)
          Length = 101679

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caagattcttaaaccctaat 91
             ||||||||||||||||||||
Sbjct: 24478 caagattcttaaaccctaat 24459



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>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2,
              complete sequence
          Length = 175342

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gttccatggtttattcagaa 358
              ||||||||||||||||||||
Sbjct: 118993 gttccatggtttattcagaa 119012



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>gb|AC012319.6| Homo sapiens chromosome 19 clone LLNLF-67E10, complete sequence
          Length = 39492

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   ctgctgactgatgtctcttt 507
             ||||||||||||||||||||
Sbjct: 34732 ctgctgactgatgtctcttt 34751



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>gb|AC011505.6| Homo sapiens chromosome 19 clone CTD-2081K17, complete sequence
          Length = 167417

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 488  ctgctgactgatgtctcttt 507
            ||||||||||||||||||||
Sbjct: 6160 ctgctgactgatgtctcttt 6141



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>gb|AC020944.4| Homo sapiens chromosome 19 clone LLNLF-123D5, complete sequence
          Length = 42394

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   ctgctgactgatgtctcttt 507
             ||||||||||||||||||||
Sbjct: 39175 ctgctgactgatgtctcttt 39156



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 491      ctgactgatgtctctttgga 510
                ||||||||||||||||||||
Sbjct: 30967871 ctgactgatgtctctttgga 30967852



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>gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, complete sequence
          Length = 174225

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ttctgctttagtctcagaaa 383
              ||||||||||||||||||||
Sbjct: 171359 ttctgctttagtctcagaaa 171340



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>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20,
              complete sequence
          Length = 174999

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gttccatggtttattcagaa 358
              ||||||||||||||||||||
Sbjct: 118645 gttccatggtttattcagaa 118664



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>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence
          Length = 169155

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cttgcttctgcccagtgaca 159
             ||||||||||||||||||||
Sbjct: 37042 cttgcttctgcccagtgaca 37061



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>gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, complete sequence
          Length = 170043

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tttccatatgtgaaaacatg 129
             ||||||||||||||||||||
Sbjct: 77718 tttccatatgtgaaaacatg 77699



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>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0516G10
          Length = 148937

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   ctgactgatgtctctttgga 510
             ||||||||||||||||||||
Sbjct: 22827 ctgactgatgtctctttgga 22808



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>emb|CR761150.2| Xenopus tropicalis finished cDNA, clone TEgg031l16
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 551 accagctaaaggcacatgtg 570
           ||||||||||||||||||||
Sbjct: 380 accagctaaaggcacatgtg 399



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>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete
              sequence
          Length = 233270

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    tactagtagaatctgatgat 223
              ||||||||||||||||||||
Sbjct: 207034 tactagtagaatctgatgat 207053



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>emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chromosome 13, complete
              sequence
          Length = 184172

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    ggcattctggcttaaccctt 288
              ||||||||||||||||||||
Sbjct: 169708 ggcattctggcttaaccctt 169727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,064,747
Number of Sequences: 3902068
Number of extensions: 5064747
Number of successful extensions: 90719
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90637
Number of HSP's gapped (non-prelim): 82
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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