| Clone Name | rbags25m03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U41273.1| Caenorhabditis elegans cosmid C26B9, complete sequence Length = 24378 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gtgaaaacatgattacatgat 139 ||||||||||||||||||||| Sbjct: 14645 gtgaaaacatgattacatgat 14625
>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence Length = 176647 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 tttccatggaactaaatattc 439 ||||||||||||||||||||| Sbjct: 70917 tttccatggaactaaatattc 70897
>gb|AC093804.3| Homo sapiens BAC clone RP11-326C15 from 4, complete sequence Length = 177708 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 ctgctgctgactgatgtctctttgg 509 ||||||||||||| ||||||||||| Sbjct: 29703 ctgctgctgactgttgtctctttgg 29727
>dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB565H3, complete sequence Length = 101002 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 419 tttccatggaactaaatattc 439 ||||||||||||||||||||| Sbjct: 22328 tttccatggaactaaatattc 22348
>gb|BC076683.1| Xenopus tropicalis glycerol-3-phosphate dehydrogenase 1-like, mRNA (cDNA clone MGC:79676 IMAGE:6980612), complete cds Length = 1861 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 accagctaaaggcacatgtg 570 |||||||||||||||||||| Sbjct: 358 accagctaaaggcacatgtg 377
>ref|XM_467703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 189 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ctgactgatgtctctttgga 510 |||||||||||||||||||| Sbjct: 19 ctgactgatgtctctttgga 38
>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence Length = 199094 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcttttattagcctagagt 33 |||||||||||||||||||| Sbjct: 157631 atcttttattagcctagagt 157612
>gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome 6, complete sequence Length = 222363 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 taaatattggtgaggtatcc 535 |||||||||||||||||||| Sbjct: 160344 taaatattggtgaggtatcc 160325
>gb|AC127578.4| Mus musculus BAC clone RP23-428L14 from chromosome 15, complete sequence Length = 206410 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 agtctcagaaaagcccagta 392 |||||||||||||||||||| Sbjct: 131334 agtctcagaaaagcccagta 131315
>gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chromosome unknown, complete sequence Length = 182426 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ctggtgcgtctttccatgga 428 |||||||||||||||||||| Sbjct: 102881 ctggtgcgtctttccatgga 102862
>gb|AC128662.4| Mus musculus BAC clone RP24-440E3 from chromosome 6, complete sequence Length = 134729 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 taaatattggtgaggtatcc 535 |||||||||||||||||||| Sbjct: 64092 taaatattggtgaggtatcc 64073
>emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 in linkage group 7, complete sequence Length = 168537 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 atgtgaaaacatgattacat 136 |||||||||||||||||||| Sbjct: 137330 atgtgaaaacatgattacat 137311
>emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chromosome 1 Contains part of the LPHN2 gene for latrophilin 2, complete sequence Length = 60193 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gcatctcaaagtatcatcag 464 |||||||||||||||||||| Sbjct: 3541 gcatctcaaagtatcatcag 3522
>ref|NM_001006807.1| Xenopus tropicalis glycerol-3-phosphate dehydrogenase 1-like (gpd1l), mRNA Length = 1861 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 accagctaaaggcacatgtg 570 |||||||||||||||||||| Sbjct: 358 accagctaaaggcacatgtg 377
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 caagattcttaaaccctaat 91 |||||||||||||||||||| Sbjct: 40951 caagattcttaaaccctaat 40932
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 caagattcttaaaccctaat 91 |||||||||||||||||||| Sbjct: 65982 caagattcttaaaccctaat 65963
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 caagattcttaaaccctaat 91 |||||||||||||||||||| Sbjct: 24478 caagattcttaaaccctaat 24459
>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2, complete sequence Length = 175342 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gttccatggtttattcagaa 358 |||||||||||||||||||| Sbjct: 118993 gttccatggtttattcagaa 119012
>gb|AC012319.6| Homo sapiens chromosome 19 clone LLNLF-67E10, complete sequence Length = 39492 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 ctgctgactgatgtctcttt 507 |||||||||||||||||||| Sbjct: 34732 ctgctgactgatgtctcttt 34751
>gb|AC011505.6| Homo sapiens chromosome 19 clone CTD-2081K17, complete sequence Length = 167417 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ctgctgactgatgtctcttt 507 |||||||||||||||||||| Sbjct: 6160 ctgctgactgatgtctcttt 6141
>gb|AC020944.4| Homo sapiens chromosome 19 clone LLNLF-123D5, complete sequence Length = 42394 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ctgctgactgatgtctcttt 507 |||||||||||||||||||| Sbjct: 39175 ctgctgactgatgtctcttt 39156
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ctgactgatgtctctttgga 510 |||||||||||||||||||| Sbjct: 30967871 ctgactgatgtctctttgga 30967852
>gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, complete sequence Length = 174225 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ttctgctttagtctcagaaa 383 |||||||||||||||||||| Sbjct: 171359 ttctgctttagtctcagaaa 171340
>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20, complete sequence Length = 174999 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gttccatggtttattcagaa 358 |||||||||||||||||||| Sbjct: 118645 gttccatggtttattcagaa 118664
>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence Length = 169155 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cttgcttctgcccagtgaca 159 |||||||||||||||||||| Sbjct: 37042 cttgcttctgcccagtgaca 37061
>gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, complete sequence Length = 170043 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tttccatatgtgaaaacatg 129 |||||||||||||||||||| Sbjct: 77718 tttccatatgtgaaaacatg 77699
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ctgactgatgtctctttgga 510 |||||||||||||||||||| Sbjct: 22827 ctgactgatgtctctttgga 22808
>emb|CR761150.2| Xenopus tropicalis finished cDNA, clone TEgg031l16 Length = 1878 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 accagctaaaggcacatgtg 570 |||||||||||||||||||| Sbjct: 380 accagctaaaggcacatgtg 399
>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete sequence Length = 233270 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tactagtagaatctgatgat 223 |||||||||||||||||||| Sbjct: 207034 tactagtagaatctgatgat 207053
>emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chromosome 13, complete sequence Length = 184172 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ggcattctggcttaaccctt 288 |||||||||||||||||||| Sbjct: 169708 ggcattctggcttaaccctt 169727 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,064,747 Number of Sequences: 3902068 Number of extensions: 5064747 Number of successful extensions: 90719 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90637 Number of HSP's gapped (non-prelim): 82 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)