| Clone Name | rbags26b01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190055.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 886 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 827 Query: 348 cgcc 351 |||| Sbjct: 826 cgcc 823
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 41049859 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 41049918 Query: 348 cgcc 351 |||| Sbjct: 41049919 cgcc 41049922 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 4002951 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 4002990
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 86789 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 86848 Query: 348 cgcc 351 |||| Sbjct: 86849 cgcc 86852
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 178284 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 178343 Query: 348 cgcc 351 |||| Sbjct: 178344 cgcc 178347
>gb|AY110951.1| Zea mays CL945_1 mRNA sequence Length = 1121 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 394 ctgcaggccgggggtgtcgtccacgtgcagcagcagcgtcaggc 437 |||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 302 ctgcaggccgggcgtgtcgtccacgtgcagcagcagcgtgaggc 259
>ref|NM_197730.1| Oryza sativa (japonica cultivar-group) putative ethylene-forming enzyme (OSJNBa0042H09.19), mRNA Length = 1083 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 290 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 348 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 863 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 805
>dbj|AK108419.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H11, full insert sequence Length = 1216 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 290 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 348 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 694 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 636
>dbj|AK072706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138C05, full insert sequence Length = 2491 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 290 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 348 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 874 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 816
>ref|XM_468860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 1442 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 1383 Query: 338 atga 341 |||| Sbjct: 1382 atga 1379 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 1348 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 1289 Query: 432 tcaggc 437 |||||| Sbjct: 1288 tcaggc 1283
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 18383972 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 18383913 Query: 338 atga 341 |||| Sbjct: 18383912 atga 18383909 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 18383878 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 18383819 Query: 432 tcaggc 437 |||||| Sbjct: 18383818 tcaggc 18383813
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 150403 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 150344 Query: 338 atga 341 |||| Sbjct: 150343 atga 150340 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 150309 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 150250 Query: 432 tcaggc 437 |||||| Sbjct: 150249 tcaggc 150244
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 18378013 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 18377954 Query: 338 atga 341 |||| Sbjct: 18377953 atga 18377950 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 18377919 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 18377860 Query: 432 tcaggc 437 |||||| Sbjct: 18377859 tcaggc 18377854
>dbj|AK119216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E12, full insert sequence Length = 1478 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 956 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 897 Query: 338 atga 341 |||| Sbjct: 896 atga 893 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 862 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 803 Query: 432 tcaggc 437 |||||| Sbjct: 802 tcaggc 797
>dbj|AK104779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C04, full insert sequence Length = 1085 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 478 Query: 338 atga 341 |||| Sbjct: 477 atga 474 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 443 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 384 Query: 432 tcaggc 437 |||||| Sbjct: 383 tcaggc 378
>dbj|AK067647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O20, full insert sequence Length = 1505 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 980 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 921 Query: 338 atga 341 |||| Sbjct: 920 atga 917 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 886 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 827 Query: 432 tcaggc 437 |||||| Sbjct: 826 tcaggc 821
>dbj|AK067507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109I01, full insert sequence Length = 2436 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 1914 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 1855 Query: 338 atga 341 |||| Sbjct: 1854 atga 1851 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 1820 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 1761 Query: 432 tcaggc 437 |||||| Sbjct: 1760 tcaggc 1755
>dbj|AK060946.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F02, full insert sequence Length = 1085 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 278 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 337 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 478 Query: 338 atga 341 |||| Sbjct: 477 atga 474 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 431 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 443 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 384 Query: 432 tcaggc 437 |||||| Sbjct: 383 tcaggc 378
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||||||||||||||| Sbjct: 108303 ctcttgtacttgccattggtgaggatctg 108275 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||| ||||||||||| Sbjct: 114198 ctcttgtacttgccatttgtgaggatctg 114170
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||||||||||||||| Sbjct: 21501754 ctcttgtacttgccattggtgaggatctg 21501782 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||| ||||||||||| Sbjct: 21495859 ctcttgtacttgccatttgtgaggatctg 21495887
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 |||||||||| |||||||||||| | || ||| || ||||||||||| ||||||| || Sbjct: 11295657 cgctcttgtagtagccattggtgagaacctcgaggatctcgccgacgttaatgacgaagg 11295716 Query: 348 cgcctggcagcgg 360 | || |||||||| Sbjct: 11295717 cacccggcagcgg 11295729 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 301 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggcagcgg 360 |||||||||||| | || ||| | ||||||| |||||||| || ||| ||||||||||| Sbjct: 11269919 gccattggtgagaacctcgagggtctcgccgatgttgatgatgaaggcacctggcagcgg 11269860
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 288 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 347 |||||||||| |||||||||||| | || ||| || ||||||||||| ||||||| || Sbjct: 130829 cgctcttgtagtagccattggtgagaacctcgaggatctcgccgacgttaatgacgaagg 130888 Query: 348 cgcctggcagcgg 360 | || |||||||| Sbjct: 130889 cacccggcagcgg 130901 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 301 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggcagcgg 360 |||||||||||| | || ||| | ||||||| |||||||| || ||| ||||||||||| Sbjct: 105091 gccattggtgagaacctcgagggtctcgccgatgttgatgatgaaggcacctggcagcgg 105032
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||||||||||||||| Sbjct: 21513417 ctcttgtacttgccattggtgaggatctg 21513445 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 290 ctcttgtacgtgccattggtgaggatctg 318 ||||||||| ||||||| ||||||||||| Sbjct: 21507522 ctcttgtacttgccatttgtgaggatctg 21507550
>dbj|AB189152.1| Hordeum vulgare GA3ox mRNA for gibberellin 3beta-hydroxylase, complete cds Length = 1332 Score = 48.1 bits (24), Expect = 0.024 Identities = 48/56 (85%) Strand = Plus / Minus Query: 301 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggca 356 ||||||||||||||| |||| | |||||||||||||| ||| | |||||| |||| Sbjct: 974 gccattggtgaggatgtggaagaggtcgccgacgttgacgaccatggcgcccggca 919
>gb|DQ118252.1| Triticum aestivum gibberellin 3-oxidase 2-3 (GA3ox2-3) mRNA, complete cds Length = 1602 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttga 338 |||||||||||||||| | |||||||||||||| Sbjct: 940 ttggtgaggatctggaagaggtcgccgacgttga 907
>gb|DQ118251.1| Triticum aestivum gibberellin 3-oxidase 2-2 (GA3ox2-2) mRNA, complete cds Length = 1653 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttga 338 |||||||||||||||| | |||||||||||||| Sbjct: 955 ttggtgaggatctggaagaggtcgccgacgttga 922
>gb|DQ118250.1| Triticum aestivum gibberellin 3-oxidase 2-1 (GA3ox2-1) mRNA, complete cds Length = 1473 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttga 338 |||||||||||||||| | |||||||||||||| Sbjct: 954 ttggtgaggatctggaagaggtcgccgacgttga 921
>ref|XM_465196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 573 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatga 341 |||||||||| || ||||||||||||| |||||||| Sbjct: 140 ttggtgaggacctcaagaatgtcgccgatgttgatga 104
>ref|NM_197716.1| Oryza sativa (japonica cultivar-group) putative dioxygenase (OSJNBa0010C11.16), mRNA Length = 1053 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Minus Query: 276 ccctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgt 335 |||||||||| ||||| ||||| | |||||| | || |||| || ||||||||||||| Sbjct: 847 ccctgtgctcaacgctcctgtacctcccattgctcagaatctcaagcatgtcgccgacgt 788 Query: 336 tgatgacga 344 ||| ||||| Sbjct: 787 tgacgacga 779
>ref|XM_425382.1| PREDICTED: Gallus gallus similar to 6330406P08Rik protein (LOC427811), mRNA Length = 1152 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 atccacgaaccttgtcccttc 120 ||||||||||||||||||||| Sbjct: 204 atccacgaaccttgtcccttc 184
>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence Length = 214250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cattggtgaggatctggagaa 323 ||||||||||||||||||||| Sbjct: 55988 cattggtgaggatctggagaa 56008
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatga 341 |||||||||| || ||||||||||||| |||||||| Sbjct: 12229466 ttggtgaggacctcaagaatgtcgccgatgttgatga 12229502
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 gctccgggagcggcttcacca 209 ||||||||||||||||||||| Sbjct: 806886 gctccgggagcggcttcacca 806866
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatga 341 |||||||||| || ||||||||||||| |||||||| Sbjct: 52927 ttggtgaggacctcaagaatgtcgccgatgttgatga 52963
>gb|AY804252.1| Musa acuminata ACC oxidase (MAO3) gene, complete cds Length = 3718 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 2746 cgctcttgtacttgccattggtga 2723
>ref|NM_191620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1122 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>gb|AY551431.1| Hordeum vulgare subsp. vulgare GA 3-oxidase 2 (GA3ox2) mRNA, complete cds Length = 1594 Score = 40.1 bits (20), Expect = 5.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggca 356 ||||||||||| |||| | |||||||||||||| ||| | |||||| |||| Sbjct: 964 ttggtgaggatgtggaagaggtcgccgacgttgacgaccatggcgcccggca 913
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gcctggcagcgggttcagcg 368 |||||||||||||||||||| Sbjct: 364519 gcctggcagcgggttcagcg 364500
>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence Length = 211640 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 aacacaagcattctgaaacatcac 240 |||||||||||||||| ||||||| Sbjct: 25333 aacacaagcattctgacacatcac 25310
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tctcgacgtccggcagcacc 277 |||||||||||||||||||| Sbjct: 111423 tctcgacgtccggcagcacc 111442
>gb|U86045.1|MSU86045 Musa sp. 1-aminocyclopropane-1-carboxylate oxidase (MAO2) gene, complete cds Length = 3718 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 2746 cgctcttgtacttgccattggtga 2723
>gb|L02630.5| Xanthomonas campestris XpsE (xpsE), XpsF (xpsF), XpsG (xpsG), XpsH (xpsH), XpsI (xpsI), XpsJ (xpsJ), XpsK (xpsK), and XpsL (xpsL) genes, complete cds Length = 7813 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 ccacgtgcagcagcagcgtcaggc 437 |||||||||||||||||| ||||| Sbjct: 849 ccacgtgcagcagcagcggcaggc 826
>emb|AJ223232.1|MAAJ3232 Musa acuminata ACO1 gene Length = 1593 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 1203 cgctcttgtacttgccattggtga 1180
>gb|AY699705.1| Streptococcus thermophilus bacteriophage 2972, complete genome Length = 34704 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttcccttctcgaccaaggtt 78 |||||||||||||||||||| Sbjct: 27758 ttcccttctcgaccaaggtt 27739
>gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, complete sequence Length = 173960 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 attggtgaggatctggagaa 323 |||||||||||||||||||| Sbjct: 158790 attggtgaggatctggagaa 158771
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cgacgttgatgacgagggcg 349 |||||||||||||||||||| Sbjct: 24691685 cgacgttgatgacgagggcg 24691704
>emb|AJ505611.2|MAC505611 Musa acuminata mRNA for putative aminocyclopropane carboxylate oxidase (aco gene), cultivar Ney Poovan Length = 1181 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 768 cgctcttgtacttgccattggtga 745
>gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complete sequence Length = 90527 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 attggtgaggatctggagaa 323 |||||||||||||||||||| Sbjct: 64756 attggtgaggatctggagaa 64775
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 124855 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 124894
>emb|AJ604546.1| Musa acuminata mRNA for 1-aminocyclopropane-1-carboxylate oxidase (aco gene), cultivar Robusta Length = 1171 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 744 cgctcttgtacttgccattggtga 721
>emb|AJ505610.1|MIN505610 Mangifera indica partial mRNA for putative aminocyclopropane carboxylate oxidase (aco gene), cultivar Alphonso Length = 806 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 583 cgctcttgtacttgccattggtga 560
>gb|AF081917.1|AF081917 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1209 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 740 cgctcttgtacttgccattggtga 717
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cgacgttgatgacgagggcg 349 |||||||||||||||||||| Sbjct: 24619891 cgacgttgatgacgagggcg 24619910
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cgacgttgatgacgagggcg 349 |||||||||||||||||||| Sbjct: 136551 cgacgttgatgacgagggcg 136570
>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete sequence Length = 188228 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 aacacaagcattctgaaacatcac 240 |||||||||||||||| ||||||| Sbjct: 132902 aacacaagcattctgacacatcac 132925
>gb|U80233.1|MSU80233 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1171 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 728 cgctcttgtacttgccattggtga 705
>gb|U55770.1|MAU55770 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1169 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 726 cgctcttgtacttgccattggtga 703
>emb|X91076.1|MIDNAACCO M.acuminata acco1 gene Length = 2496 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cgctcttgtacgtgccattggtga 311 ||||||||||| |||||||||||| Sbjct: 1868 cgctcttgtacttgccattggtga 1845
>dbj|AB054083.1| Oryza sativa gene for GA 3beta-hydroxylase, complete cds Length = 1122 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>dbj|AB056519.1| Oryza sativa (japonica cultivar-group) D18 mRNA for GA 3beta-hydroxylase, complete cds Length = 1122 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>dbj|AB056518.1| Oryza sativa d18-dy mRNA for GA 3beta-hydroxylase, complete cds Length = 1113 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 821 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 782
>dbj|AB056517.1| Oryza sativa d18-Id18h mRNA for GA 3beta-hydroxylase, complete cds Length = 1121 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ttggtgaggatctggagaatgtcgccgacgttgatgacga 344 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 829 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 790 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,329,768 Number of Sequences: 3902068 Number of extensions: 3329768 Number of successful extensions: 69343 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68860 Number of HSP's gapped (non-prelim): 483 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)