>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  146 bits (368), Expect = 6e-35
 Identities = 81/190 (42%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
 Frame = -3

Query: 662  KNTCLAYLASLNEPDVTELALNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQ 483
            +N CL +LA         L   ++  A NMT+  AAL+A        R+  + ++ +KW 
Sbjct: 680  RNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH 739

Query: 482  QDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAK 306
            Q+ LV+ KWF LQATS     +  VR LL H +F M NPN++ SLIG F GS P +FHA+
Sbjct: 740  QNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAE 799

Query: 305  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 126
            DGSGY FL E++  L+  NPQVASR++    R +RYD  RQ   +A LE +     LS +
Sbjct: 800  DGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGD 859

Query: 125  VYEIASKSLA 96
            +YE  +K+LA
Sbjct: 860  LYEKITKALA 869

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  139 bits (351), Expect = 6e-33
 Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 1/189 (0%)
 Frame = -3

Query: 662  KNTCLAYLASLNEPDVTELALNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQ 483
            +N CL YLA  N  +   L    Y +A NMT+  AAL+  ++     R+  L DF  KWQ
Sbjct: 682  RNLCLTYLAYTNLGN--NLVQKHYNNANNMTDTLAALSVATKAALLCRDVLLADFEQKWQ 739

Query: 482  QDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHAK 306
             D LV+ KWFALQAT      +  ++ L+ HP+F+  NPN++ SL+G F    + +FH  
Sbjct: 740  HDGLVMDKWFALQATRPDDNVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNV 799

Query: 305  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 126
             GSGY+FL +V+++L++ NPQVA+R++    R+ R+D  RQ L K  LE +     LS++
Sbjct: 800  SGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKD 859

Query: 125  VYEIASKSL 99
            ++E   K+L
Sbjct: 860  LFEKIEKAL 868

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score =  127 bits (320), Expect = 2e-29
 Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 3/191 (1%)
 Frame = -3

Query: 662  KNTCLAYLASLNEPDVTELA--LNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNK 489
            +N C   L++  +P    LA  L  + +A NMT+    L  +    G  RE AL  F++ 
Sbjct: 674  RNACAEALSA--DPHAENLARLLGHFGAARNMTDMIGGLYPMVAMGGVPREKALESFHHA 731

Query: 488  WQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCG-SPVSFH 312
            W+ + LV+ KWFA+Q     P  +  V  L  HP F+  NPN++ +L+  F   +P  FH
Sbjct: 732  WRTEPLVLDKWFAVQGRDPNPDALERVIALTQHPDFEPTNPNRLRALVSTFANFNPARFH 791

Query: 311  AKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLS 132
               G+GY FL + +L++D  NP  A+R+V     WRRY      L +AQLE I++   LS
Sbjct: 792  DPSGAGYAFLADEILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLS 851

Query: 131  ENVYEIASKSL 99
            +NV E+ASK+L
Sbjct: 852  KNVLELASKAL 862

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 1/183 (0%)
 Frame = -3

Query: 662  KNTCLAYLASLNEPDVTELALNEYKSATNMTEQFAALAALSQNPGQVREDALLD-FYNKW 486
            +NT L+ L+    P++    LNE    +        L +LS +    +   L D  Y   
Sbjct: 898  RNTLLSLLSKAQYPNI----LNEIIEHSKSPYPSNWLTSLSVSAYFDKYFELYDKTYKLS 953

Query: 485  QQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAK 306
            + D L++ +W    + SD       ++KL      D +NPN + ++   F  +   FH  
Sbjct: 954  KDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDI 1013

Query: 305  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 126
             G GYK + EV+ + DK NP VA+++   F  W + D  RQ L   ++  ++    +S N
Sbjct: 1014 SGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNN 1073

Query: 125  VYE 117
            + E
Sbjct: 1074 LKE 1076

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -3

Query: 410 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 231
           +R+ + +  FDM N  KV+ LIG         H +DG        V   L+++N  + + 
Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542

Query: 230 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 102
             S+   W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587

>CYSJ_MANSM (Q65T53) Sulfite reductase [NADPH] flavoprotein alpha-component (EC|
           1.8.1.2) (SIR-FP)
          Length = 597

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 620 DVTELALNEYKSATNMTEQFAALAALSQNPGQVREDAL 507
           +VT  AL EYK+ T   EQF  L   +Q  G+  E+ +
Sbjct: 90  NVTRKALKEYKAKTIGDEQFVLLVTSTQGEGEAPEEGV 127

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +2

Query: 155 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 292
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 293 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 397
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,078,865
Number of Sequences: 219361
Number of extensions: 1968677
Number of successful extensions: 5196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5192
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)