ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26a22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 p... 28 4.3
2Y123_THEMA (Q9WXX7) Putative periplasmic metal-binding protein T... 28 5.6
3IF1A2_HALSA (Q9HP87) Translation initiation factor 1A-2 (aIF-1A-2) 27 9.6
4Y281_HAEIN (P44610) Hypothetical metabolite transport protein HI... 27 9.6
5DMD_MOUSE (P11531) Dystrophin 27 9.6

>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)|
          Length = 350

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 67  LSVLTKTVHCSMSSSLWLQ*YFYF----LLIHLQGIFFFL 174
           L VL  T HCS+ S   +  YF+F    LL+ +  I++FL
Sbjct: 261 LKVLYATCHCSLQSVPDIPYYFFFNILLLLLMVMNIYWFL 300



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>Y123_THEMA (Q9WXX7) Putative periplasmic metal-binding protein TM0123|
           precursor
          Length = 267

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 PGYLFFFKXMPTELTNLSMGHSRSQS 230
           P + +FFK    EL  LS GH  S S
Sbjct: 173 PSFTYFFKEFGLELITLSSGHEHSTS 198



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>IF1A2_HALSA (Q9HP87) Translation initiation factor 1A-2 (aIF-1A-2)|
          Length = 94

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 158 PWRWMSKK*KYHWSQSDDDIEQ 93
           PW W  +K    W  SD D +Q
Sbjct: 65  PWDWQDEKANVEWRYSDQDADQ 86



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>Y281_HAEIN (P44610) Hypothetical metabolite transport protein HI0281|
          Length = 438

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 60  FGAQRSYKDSPLLDVIITLAPVILLFFAHPPPGYLF 167
           F  Q  + D PL + +++L+ + L FFA P    LF
Sbjct: 38  FNTQFFHSDDPLSNDLLSLSTLALAFFARPIGSALF 73



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>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 176  FKKKKIPWRWMSKK*KYHWSQSDDDIEQWTVFVRTLSS 63
            FKK + P  W   K K++  +  D I Q    VRTL++
Sbjct: 2129 FKKTQNPENWEHAKYKWYLKELQDGIGQRQAVVRTLNA 2166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,930,937
Number of Sequences: 219361
Number of extensions: 657805
Number of successful extensions: 1623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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