>YC20L_ARATH (O80813) Ycf20-like protein|
          Length = 121

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
 Frame = -2

Query: 384 NPDNSG-NSTRLFNAIQSFXXXXXXXXXKVSRGFPVKILCFLIGFYCATAFATVIGQTGD 208
           N D +G  STRL     +             + FP+KI   L+GFY A A AT++GQTGD
Sbjct: 2   NGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGD 61

Query: 207 WDILSAGLAVAIVEVIGALMYR--ASFALLGRMKNIISIFNYWKAGLTLGLF 58
           WD+L AG+ VA +E IG LMY+  +S    G++++ +   N+WKAG+ LGLF
Sbjct: 62  WDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLF 113

>YCF20_MESVI (Q9MUL5) Hypothetical 13.0 kDa protein ycf20 (RF20)|
          Length = 116

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
 Frame = -2

Query: 297 SRGFPVKILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGR 118
           S  FP+KIL  L+GF+ AT  ATV GQTGDWD+L AG+ VA++E++G  MY   +    +
Sbjct: 25  SINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQ 84

Query: 117 MKNIISI----FNYWKAGLTLGLF 58
           + +I  +     NY K GL  GLF
Sbjct: 85  VFDISFLSLIGINYIKIGLIFGLF 108

>YCF20_PORPU (P51214) Hypothetical 11.9 kDa protein ycf20 (ORF108)|
          Length = 108

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/73 (36%), Positives = 44/73 (60%)
 Frame = -2

Query: 276 ILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRMKNIISI 97
           ++  L+GF+ +T  +T+ GQTGDW I++A L VA +E++  ++Y        R    I++
Sbjct: 32  LISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVR----INL 87

Query: 96  FNYWKAGLTLGLF 58
            N  K G+T GLF
Sbjct: 88  LNNLKIGITYGLF 100

>YCF20_GUITH (O78445) Hypothetical 7.2 kDa protein ycf20|
          Length = 64

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = -2

Query: 294 RGFPVKILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRM 115
           R F   +L  L GF+ +T  +T++ QTGDW IL+A + VA +E+I    Y+    ++G +
Sbjct: 2   RLFFYNLLTILFGFFLSTLLSTILSQTGDWSILAASILVATIELINKNKYKKKPLIIGLV 61

Query: 114 KNI 106
             I
Sbjct: 62  LTI 64

>YCF20_CYACA (Q9MVP1) Hypothetical 11.5 kDa protein ycf20|
          Length = 101

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 25/70 (35%), Positives = 39/70 (55%)
 Frame = -2

Query: 267 FLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRMKNIISIFNY 88
           FL GF+ ++A +T++ QT +W IL+A + ++IVE+   L ++  F       N     N 
Sbjct: 24  FLFGFFLSSATSTILIQTNEWSILTAAILISIVELFNYLKHKFQFNDRKSGYNCFFFINL 83

Query: 87  WKAGLTLGLF 58
            K GL  GLF
Sbjct: 84  AKLGLLYGLF 93

>YC20L_SYNY3 (P72983) Ycf20-like protein|
          Length = 109

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 38/79 (48%)
 Frame = -2

Query: 294 RGFPVKILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRM 115
           R   + +L FL GF+  TA AT  GQ   WD++ A   +   E++    YR    +    
Sbjct: 26  RRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFILLFCELVNRWFYRRGVKMGDLQ 85

Query: 114 KNIISIFNYWKAGLTLGLF 58
             +++IF   K G++  LF
Sbjct: 86  AEVLNIF---KMGVSYSLF 101

>YCF20_GALSU (P48409) Hypothetical 9.5 kDa protein ycf20|
          Length = 83

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 38/73 (52%)
 Frame = -2

Query: 276 ILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRMKNIISI 97
           I+  L+G + +    T+  QTGDW +      +A+ E+I  + Y     +    KNII+ 
Sbjct: 5   IINTLLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ--FIKKTHKNIINC 62

Query: 96  FNYWKAGLTLGLF 58
           FN +K GL  GL+
Sbjct: 63  FNGFKIGLIYGLY 75

>YCF20_AGLNE (P34813) Hypothetical 11.4 kDa protein ycf20|
          Length = 100

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -2

Query: 282 VKILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRMKN-- 109
           ++++   +G++  T   ++  +TGDW +++A L V I E + AL+Y        + +N  
Sbjct: 21  LQLISLFLGYFFCTIICSIPKETGDWGLITALLIVGINETMSALIYSYK-----KYENNI 75

Query: 108 IISIFNYWKAGLTLGLF 58
           I+   N  K G+  GLF
Sbjct: 76  IVKTINGIKIGIIYGLF 92

>PSAB_EUGGR (P19431) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 734

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = -2

Query: 291 GFPVKILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVIGALMYRASFALLGRMK 112
           G    +L FL GF+  T    +       DI    LA+A++ ++   MYR +FA+  R+ 
Sbjct: 249 GAGTAVLTFLGGFHPETKSLWLT------DIAHHHLAIAVLFIVAGHMYRTNFAIGHRID 302

Query: 111 NIISIFNYWKAGLTLGLFWIHLSIRDNSL 25
           +I++        L LG F ++ +I +NSL
Sbjct: 303 DILNAHKAPSGKLGLGHFGLYETI-NNSL 330

>NUOM_BUCAI (P57263) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain M) (NDH-1, chain M)
          Length = 505

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -2

Query: 264 LIGFYCATAFATVIGQTGDW--DILSAGLAVAIVEVIGALMYRASFALLGRMKNIISIFN 91
           +IGF+ + A    I     W  DI S  L+   VE+IG L+  A +ALL    N++   +
Sbjct: 223 MIGFFLSFAIKMPIVPFHGWLPDIHSRSLSCGSVEIIGVLLKTAPYALL--RYNLVLFPD 280

Query: 90  YWKAGLTLGLFWIHLSI 40
             K+   + +FW  +SI
Sbjct: 281 STKSFSLIAVFWGIISI 297

>PMT4_YEAST (P46971) Dolichyl-phosphate-mannose--protein mannosyltransferase 4|
           (EC 2.4.1.109)
          Length = 762

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -2

Query: 195 SAGLAVAIV---EVIGALMYRA-SFALLGRMKNIISIFNYWKAGLTLGLFWIHLSIRDNS 28
           + GL+++ V   + +G + Y A  FA +  +  ++ I    KAGL+L  F  H S R N 
Sbjct: 229 ATGLSLSFVISTKYVGVMTYSAIGFAAVVNLWQLLDI----KAGLSLRQFMRHFSKRLNG 284

Query: 27  LIMSPF 10
           L++ PF
Sbjct: 285 LVLIPF 290

>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25)
          Length = 790

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
 Frame = -2

Query: 276 ILCFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEVI-------GALMYRASFALLGR 118
           +L  L+G       A +    G W  L  GLA A+  V+       GAL+Y  +FAL   
Sbjct: 1   MLIALVGLIFLLGGARLASLGGSWYFLLMGLATALAGVLIVLRRPAGALVYGVAFAL--- 57

Query: 117 MKNIISIFNYWKAGLTLGLFW 55
                 ++  W AGL    FW
Sbjct: 58  ----TLVWALWDAGLE---FW 71

>GUN4_TRIRE (O14405) Endoglucanase-4 precursor (EC 3.2.1.4) (Endoglucanase IV)|
           (Endo-1,4-beta-glucanase IV) (Cellulase IV) (EGIV)
          Length = 344

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 524 PALREGLPPSRAAGRSNRGASPWCVRLLPSAEAPGGCNGPSRLWETTILTIQA 366
           P +  GLP S A G S   A+        SA  PGG +GP+    TT  T QA
Sbjct: 243 PTVVSGLPTSVAQGSSAATATA-------SATVPGGGSGPTSRTTTTARTTQA 288

>VANZ_ENTFC (Q06242) Protein vanZ|
          Length = 161

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -2

Query: 201 ILSAGL-AVAIVEVIGALMYRASFALLGRMKNIISIFNYWKAGLTLGLFWIHLSIR---D 34
           ILS GL A+ +V +I  ++++  +       NI+S+FNY +  L L  F    + R   D
Sbjct: 4   ILSRGLLALYLVTLIWLVLFKLQY-------NILSVFNYHQRSLNLTPFTATGNFREMID 56

Query: 33  NSLIMSPF 10
           N +I  PF
Sbjct: 57  NVIIFIPF 64

>MATC_NEUCR (Q10115) Mating-type protein A-2 (Mt A-2)|
          Length = 373

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 103 DYILHPAKKSKGSPVHESANNLDDGNSKTSRKY 201
           D+ LHP ++  G+P H+   NL+ G+ K  R +
Sbjct: 199 DHTLHPLRRVPGTPWHKFFGNLEVGDDKQLRLF 231

>MYO1_SCHPO (Q9Y7Z8) Myosin-1|
          Length = 1217

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 155  APITSTMATARPAESMSQSPVCPMTVANAVAQ*NPIRK 268
            AP+TST  T + A ++S S   P TV +A +  + I K
Sbjct: 1042 APVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISK 1079

>TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor necrosis factor|
           type 2 receptor-associated protein 3)
          Length = 501

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 112 LHPAKKSKGSPVHESANNLDDGNSKTSRKYVPVACLPDDGSKCRGTVKSYQ 264
           +H     +G  + ES++   D  ++   + +P  C P DG   +GT+K Y+
Sbjct: 73  VHEGIYEEGISILESSSAFPDNAARREVESLPAVC-PSDGCTWKGTLKEYE 122

>POLN_FCVF9 (P27409) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1763

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 234 QMPWHSKILSESIGSLLETLDLLSSACQTTSLKKIELH*TAECYC 368
           ++ W  K  S+ +  LLE + +     QTT++ KI L     CYC
Sbjct: 160 RLEWREKFFSKPLDFLLERVGVSKDILQTTAIWKIILE--KACYC 202

>ATG15_ASHGO (Q75EN3) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related|
           protein 15)
          Length = 544

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = -1

Query: 310 AEESKSRVSSKDPMLSDRILLCHGICYRHRANRRLGHTFCWSCCCHRRGYWRSHVQGFLC 131
           A E +S V       S ++L   G      AN +L     +SCCC R  Y  + V     
Sbjct: 257 ANEDRSVVVLALKGTSSQVLPGSGDDDETSANDKLNDNLLFSCCCARVSYLWTTVCDCYI 316

Query: 130 SSWQDEEYNLHIQLLESRAHTWIVLDSFK 44
            S+  EE  L  +L     +    LD +K
Sbjct: 317 KSYTCEESCLESELRRKDRYYQAGLDMYK 345

>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2|
          Length = 501

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 133 KGSPVHESANNLDDGNSKTSRKYVPVACLPDDGSKCRGTVKSYQ 264
           +G  + ES++   D  ++   + +P  C P+DG   +GT+K Y+
Sbjct: 80  EGISILESSSAFPDNAARREVESLPAVC-PNDGCTWKGTLKEYE 122

>KLF17_MOUSE (Q8CFA7) Krueppel-like factor 17 (Zinc finger protein 393) (Germ|
           cell-specific zinc finger protein)
          Length = 341

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 429 FCRRKETHAPRGS-SPVASSGGTRRRQPLS 515
           F R   T AP G+ SP  S G TRR+ P+S
Sbjct: 224 FVREPPTPAPEGAESPSTSRGATRRQSPVS 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,315,081
Number of Sequences: 219361
Number of extensions: 1644004
Number of successful extensions: 5304
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5298
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)