| Clone Name | rbags26a18 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RAP1_SCHPO (Q96TL7) DNA-binding protein rap1 | 30 | 2.0 | 2 | CLC4M_PANTR (Q8HYC0) C-type lectin domain family 4 member M (CD2... | 28 | 9.9 | 3 | CLC4M_HYLSY (Q8HY11) C-type lectin domain family 4 member M (CD2... | 28 | 9.9 | 4 | CLC4M_GORGO (Q8HY06) C-type lectin domain family 4 member M (CD2... | 28 | 9.9 |
|---|
>RAP1_SCHPO (Q96TL7) DNA-binding protein rap1| Length = 693 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = +1 Query: 55 KVGMTSLHGYKASHKIVEENMR 120 KV TSL G ASHK VEENM+ Sbjct: 557 KVAHTSLEGNAASHKKVEENMQ 578
>CLC4M_PANTR (Q8HYC0) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 445 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = -1 Query: 210 NVPRCG-DLYWFCKK*LVCFR 151 N RC D YW CKK VCFR Sbjct: 423 NDNRCDIDNYWICKKPAVCFR 443
>CLC4M_HYLSY (Q8HY11) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 422 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = -1 Query: 210 NVPRCG-DLYWFCKK*LVCFR 151 N RC D YW CKK + CFR Sbjct: 400 NDNRCNVDNYWICKKPIACFR 420
>CLC4M_GORGO (Q8HY06) C-type lectin domain family 4 member M (CD209 antigen-like| protein 1) (CD299 antigen) Length = 376 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = -1 Query: 210 NVPRCG-DLYWFCKK*LVCFR 151 N RC D YW CKK VCFR Sbjct: 354 NDNRCDVDNYWICKKPTVCFR 374 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,496,352 Number of Sequences: 219361 Number of extensions: 932981 Number of successful extensions: 3284 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3283 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)