ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAP1_SCHPO (Q96TL7) DNA-binding protein rap1 30 2.0
2CLC4M_PANTR (Q8HYC0) C-type lectin domain family 4 member M (CD2... 28 9.9
3CLC4M_HYLSY (Q8HY11) C-type lectin domain family 4 member M (CD2... 28 9.9
4CLC4M_GORGO (Q8HY06) C-type lectin domain family 4 member M (CD2... 28 9.9

>RAP1_SCHPO (Q96TL7) DNA-binding protein rap1|
          Length = 693

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +1

Query: 55  KVGMTSLHGYKASHKIVEENMR 120
           KV  TSL G  ASHK VEENM+
Sbjct: 557 KVAHTSLEGNAASHKKVEENMQ 578



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>CLC4M_PANTR (Q8HYC0) C-type lectin domain family 4 member M (CD209 antigen-like|
           protein 1) (CD299 antigen)
          Length = 445

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 210 NVPRCG-DLYWFCKK*LVCFR 151
           N  RC  D YW CKK  VCFR
Sbjct: 423 NDNRCDIDNYWICKKPAVCFR 443



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>CLC4M_HYLSY (Q8HY11) C-type lectin domain family 4 member M (CD209 antigen-like|
           protein 1) (CD299 antigen)
          Length = 422

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 210 NVPRCG-DLYWFCKK*LVCFR 151
           N  RC  D YW CKK + CFR
Sbjct: 400 NDNRCNVDNYWICKKPIACFR 420



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>CLC4M_GORGO (Q8HY06) C-type lectin domain family 4 member M (CD209 antigen-like|
           protein 1) (CD299 antigen)
          Length = 376

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 210 NVPRCG-DLYWFCKK*LVCFR 151
           N  RC  D YW CKK  VCFR
Sbjct: 354 NDNRCDVDNYWICKKPTVCFR 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,496,352
Number of Sequences: 219361
Number of extensions: 932981
Number of successful extensions: 3284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3283
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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