ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
2gb|AY106097.1| Zea mays PCO067286 mRNA sequence 305 9e-80
3gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 141 3e-30
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 3e-30
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
6ref|NM_111350.2| Arabidopsis thaliana unknown protein AT3G04780 ... 54 6e-04
7gb|AY093713.1| Arabidopsis thaliana AT3g04780/F7O18_27 mRNA, com... 54 6e-04
8gb|AY058116.1| Arabidopsis thaliana AT3g04780/F7O18_27 mRNA, com... 54 6e-04
9gb|AY088225.1| Arabidopsis thaliana clone 4427 mRNA, complete se... 54 6e-04
10gb|BT018546.1| Zea mays clone EL01N0438C08.d mRNA sequence 44 0.54
11emb|CR932058.7| Zebrafish DNA sequence from clone DKEY-22M14 in ... 44 0.54
12gb|AC008368.21| Trypanosoma brucei chromosome 2 clone RPCI93-1F7... 42 2.1
13gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 42 2.1
14gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome ... 42 2.1
15gb|BT012861.1| Lycopersicon esculentum clone 113949F, mRNA sequence 42 2.1
16ref|XM_946639.1| Trypanosoma brucei TREU927 hypothetical protein... 42 2.1
17emb|AL359739.8| Human DNA sequence from clone RP11-243M12 on chr... 42 2.1
18emb|BX883052.1| Rattus norvegicus chromosome 20, major histocomp... 42 2.1
19emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-... 42 2.1
20emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chro... 42 2.1
21gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 42 2.1
22gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, com... 42 2.1
23gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, com... 42 2.1
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 2.1
25gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosom... 42 2.1
26dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 2.1
27gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 2.1
28gb|AC152002.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 2.1
29ref|NM_117235.3| Arabidopsis thaliana AT-HSFB2B; transcription f... 40 8.5
30gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC... 40 8.5
31ref|XM_650880.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 8.5
32gb|AC108820.13| Mus musculus chromosome 8, clone RP23-10I8, comp... 40 8.5
33emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in ... 40 8.5
34emb|AL691473.9| Human DNA sequence from clone RP11-466L17 on chr... 40 8.5
35emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 o... 40 8.5
36emb|X89107.1|RAMADSP1 R.acetosa mRNA for regulatory protein P1 40 8.5
37emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, ... 40 8.5
38emb|AL049500.1|ATT5C23 Arabidopsis thaliana DNA chromosome 4, BA... 40 8.5
39gb|AY093206.1| Arabidopsis thaliana heat shock transcription fac... 40 8.5
40ref|NM_079738.2| Drosophila melanogaster DNA polymerase CG6768-R... 40 8.5
41gb|AY061620.1| Drosophila melanogaster SD09005 full length cDNA 40 8.5
42gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosom... 40 8.5
43emb|BX827353.1|CNS0A2D6 Arabidopsis thaliana Full-length cDNA Co... 40 8.5
44gb|AC010670.8|AC010670 Drosophila melanogaster, chromosome 3R, r... 40 8.5
45gb|DQ000003.1| Schistosoma japonicum hypothetical protein (1UE12... 40 8.5
46gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J... 40 8.5
47gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, comple... 40 8.5
48gb|BC084400.1| Xenopus laevis neurofilament protein, mRNA (cDNA ... 40 8.5
49gb|AE003743.3| Drosophila melanogaster chromosome 3R, section 81... 40 8.5
50emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 i... 40 8.5
51dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 8.5
52gb|M86654.1|XELLMWNP Xenopus laevis low molecular weight neurofi... 40 8.5
53gb|U28484.1|RAU28484 Rumex acetosa MADS box regulatory protein (... 40 8.5
54emb|AL845256.3| Mouse DNA sequence from clone RP23-58M18 on chro... 40 8.5
55emb|AL645699.1| Human DNA sequence from clone RP5-1070D5 on chro... 40 8.5
56dbj|AB035512.1| Drosophila melanogaster dPOLE gene for DNA polym... 40 8.5 
>dbj|AK101877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070H24, full
           insert sequence
          Length = 1123

 Score =  402 bits (203), Expect = e-109
 Identities = 380/439 (86%)
 Strand = Plus / Minus

                                                                       
Query: 185 cttaatgttcttctatcttcttcaggtccttcatatttgtcgtgtccacggtggttccat 244
           ||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| |
Sbjct: 648 cttaatgctcttctatcttcttcaggtccttcatatttgtagtgtccacagttgttccgt 589

                                                                       
Query: 245 aaagtgcgatcttctgaatttttgtgatgtcagctccgctttgattgtcttcaataaaca 304
           | || || |||||  ||||||||| ||  |||  ||| ||||||||||| |||||||| |
Sbjct: 588 acagcgcaatcttgagaatttttgagacatcacttccactttgattgtcctcaataaata 529

                                                                       
Query: 305 tagtcaggctgcgaacattctggaacttcacatactttagcgtcacaggcttactttcca 364
           |||||||||||||||||||||||||||| |||||||| |||  || ||||||||| ||  
Sbjct: 528 tagtcaggctgcgaacattctggaacttgacatacttaagctgcataggcttactctctg 469

                                                                       
Query: 365 gtaaatggctggatgataggtcaacactgtcacttggaggaaagtcattgacgttgctga 424
            ||||||  |||| || ||||||| |||||||||||| ||| |||||||||| |||||||
Sbjct: 468 ataaatgattggaagacaggtcaagactgtcacttggtggatagtcattgacattgctga 409

                                                                       
Query: 425 aacccatatgctctctgttggagaagagtttaactgtctttgggccttcctcctcggggc 484
           |||||||||||||| ||||| |||||||||||| ||| || ||||| || ||||||||||
Sbjct: 408 aacccatatgctctttgttgcagaagagtttaattgttttcgggccatcttcctcggggc 349

                                                                       
Query: 485 ctttgaagagcgcggaatgcagcttgatgacctgcatgaaggggatgtagatgagcagct 544
           | ||||| ||||||||||||||||| |  ||||||||||||||||||| ||| |||||||
Sbjct: 348 ccttgaatagcgcggaatgcagcttaaccacctgcatgaaggggatgtggataagcagct 289

                                                                       
Query: 545 gctcgtccgagtcgctggcgaggtgcagcccctcgtcctccctgtaaccctgcttgagcg 604
           |||| ||||| |||||||| | || |||||||||||| |||||||||||||||||||| |
Sbjct: 288 gctcatccgaatcgctggccaagtacagcccctcgtcgtccctgtaaccctgcttgaggg 229

                              
Query: 605 cgttggcgatgccgtgggc 623
           ||||  |||||| ||||||
Sbjct: 228 cgttaacgatgctgtgggc 210
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>gb|AY106097.1| Zea mays PCO067286 mRNA sequence
          Length = 972

 Score =  305 bits (154), Expect = 9e-80
 Identities = 361/430 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tcttctatcttcttcaggtccttcatatttgtcgtgtccacggtggttccataaagtgcg 252
           |||||| ||||  |||| ||||||||||||||||||||||| || || |||||||| || 
Sbjct: 627 tcttctgtctttctcagatccttcatatttgtcgtgtccacagttgtgccataaagagca 568

                                                                       
Query: 253 atcttctgaatttttgtgatgtcagctccgctttgattgtcttcaataaacatagtcagg 312
           | ||| |||||||| | ||  |||  |||   ||||||||| |||||||| | |||||||
Sbjct: 567 accttttgaattttcgagacatcacttccagattgattgtcctcaataaatacagtcagg 508

                                                                       
Query: 313 ctgcgaacattctggaacttcacatactttagcgtcacaggcttactttccagtaaatgg 372
           ||||||||||| |||||||| ||||||||||||| || ||| ||| | || |  ||||| 
Sbjct: 507 ctgcgaacattttggaacttgacatactttagcggcaaaggtttattctctatcaaatga 448

                                                                       
Query: 373 ctggatgataggtcaacactgtcacttggaggaaagtcattgacgttgctgaaacccata 432
             ||| ||||| ||||   ||||  |||| ||| |||||||||| |||||||||||||||
Sbjct: 447 tcggaggatagctcaagggtgtccattggtggatagtcattgacattgctgaaacccata 388

                                                                       
Query: 433 tgctctctgttggagaagagtttaactgtctttgggccttcctcctcggggcctttgaag 492
           |||||| ||||||| |||||||| ||||| || ||||| || ||||||||||||||||| 
Sbjct: 387 tgctctttgttggaaaagagttttactgttttagggccctcttcctcggggcctttgaat 328

                                                                       
Query: 493 agcgcggaatgcagcttgatgacctgcatgaaggggatgtagatgagcagctgctcgtcc 552
           ||| |||||||||| ||||  || |||||||||||||||||||| |||||||||||||||
Sbjct: 327 agcacggaatgcagtttgaccacttgcatgaaggggatgtagatcagcagctgctcgtcc 268

                                                                       
Query: 553 gagtcgctggcgaggtgcagcccctcgtcctccctgtaaccctgcttgagcgcgttggcg 612
           || || |||||||||| |||||||||||| |||||  ||| |||||||||||||||| ||
Sbjct: 267 gaatcactggcgaggtacagcccctcgtcgtccctcaaactctgcttgagcgcgttgacg 208

                     
Query: 613 atgccgtggg 622
           |||| |||||
Sbjct: 207 atgctgtggg 198
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Plus

                                                                         
Query: 475   tcctcggggcctttgaagagcgcggaatgcagcttgatgacctgcatgaaggggatgtag 534
             ||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||| |
Sbjct: 86695 tcctcggggcccttgaatagcgcggaatgcagcttaaccacctgcatgaaggggatgtgg 86754

                                                                         
Query: 535   atgagcagctgctcgtccgagtcgctggcgaggtgcagcccctcgtcctccctgtaaccc 594
             || ||||||||||| ||||| |||||||| | || |||||||||||| ||||||||||||
Sbjct: 86755 ataagcagctgctcatccgaatcgctggccaagtacagcccctcgtcgtccctgtaaccc 86814

                
Query: 595   tgc 597
             |||
Sbjct: 86815 tgc 86817



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                              
Query: 185   cttaatgttcttctatcttcttcaggtccttcatatttgtcgtgtccac 233
             ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 84540 cttaatgctcttctatcttcttcaggtccttcatatttgtagtgtccac 84588



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 421   ctgaaacccatatgctctctgttggagaagagtttaactgtctttgggcct 471
             |||||||||||||||||| ||||| |||||||||||| ||| || ||||||
Sbjct: 85475 ctgaaacccatatgctctttgttgcagaagagtttaattgttttcgggcct 85525



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 313   ctgcgaacattctggaacttcacatactttagcgtcacaggcttact 359
             |||||||||||||||||||| |||||||| |||  || |||||||||
Sbjct: 85134 ctgcgaacattctggaacttgacatacttaagctgcataggcttact 85180



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 382   aggtcaacactgtcacttggaggaaagtcattgacgttgctg 423
             ||||||| |||||||||||| ||| |||||||||| ||||||
Sbjct: 85341 aggtcaagactgtcacttggtggatagtcattgacattgctg 85382



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 283   ctttgattgtcttcaataaacatagtcaggctg 315
             ||||||||||| |||||||| ||||||||||||
Sbjct: 85017 ctttgattgtcctcaataaatatagtcaggctg 85049
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Minus

                                                                            
Query: 475      tcctcggggcctttgaagagcgcggaatgcagcttgatgacctgcatgaaggggatgtag 534
                ||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||| |
Sbjct: 32792846 tcctcggggcccttgaatagcgcggaatgcagcttaaccacctgcatgaaggggatgtgg 32792787

                                                                            
Query: 535      atgagcagctgctcgtccgagtcgctggcgaggtgcagcccctcgtcctccctgtaaccc 594
                || ||||||||||| ||||| |||||||| | || |||||||||||| ||||||||||||
Sbjct: 32792786 ataagcagctgctcatccgaatcgctggccaagtacagcccctcgtcgtccctgtaaccc 32792727

                   
Query: 595      tgc 597
                |||
Sbjct: 32792726 tgc 32792724



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                 
Query: 185      cttaatgttcttctatcttcttcaggtccttcatatttgtcgtgtccac 233
                ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 32795001 cttaatgctcttctatcttcttcaggtccttcatatttgtagtgtccac 32794953



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 421      ctgaaacccatatgctctctgttggagaagagtttaactgtctttgggcct 471
                |||||||||||||||||| ||||| |||||||||||| ||| || ||||||
Sbjct: 32794066 ctgaaacccatatgctctttgttgcagaagagtttaattgttttcgggcct 32794016



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 313      ctgcgaacattctggaacttcacatactttagcgtcacaggcttact 359
                |||||||||||||||||||| |||||||| |||  || |||||||||
Sbjct: 32794407 ctgcgaacattctggaacttgacatacttaagctgcataggcttact 32794361



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 382      aggtcaacactgtcacttggaggaaagtcattgacgttgctg 423
                ||||||| |||||||||||| ||| |||||||||| ||||||
Sbjct: 32794200 aggtcaagactgtcacttggtggatagtcattgacattgctg 32794159



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 283      ctttgattgtcttcaataaacatagtcaggctg 315
                ||||||||||| |||||||| ||||||||||||
Sbjct: 32794524 ctttgattgtcctcaataaatatagtcaggctg 32794492
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Minus

                                                                            
Query: 475      tcctcggggcctttgaagagcgcggaatgcagcttgatgacctgcatgaaggggatgtag 534
                ||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||| |
Sbjct: 32883356 tcctcggggcccttgaatagcgcggaatgcagcttaaccacctgcatgaaggggatgtgg 32883297

                                                                            
Query: 535      atgagcagctgctcgtccgagtcgctggcgaggtgcagcccctcgtcctccctgtaaccc 594
                || ||||||||||| ||||| |||||||| | || |||||||||||| ||||||||||||
Sbjct: 32883296 ataagcagctgctcatccgaatcgctggccaagtacagcccctcgtcgtccctgtaaccc 32883237

                   
Query: 595      tgc 597
                |||
Sbjct: 32883236 tgc 32883234



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                 
Query: 185      cttaatgttcttctatcttcttcaggtccttcatatttgtcgtgtccac 233
                ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 32885511 cttaatgctcttctatcttcttcaggtccttcatatttgtagtgtccac 32885463



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 421      ctgaaacccatatgctctctgttggagaagagtttaactgtctttgggcct 471
                |||||||||||||||||| ||||| |||||||||||| ||| || ||||||
Sbjct: 32884576 ctgaaacccatatgctctttgttgcagaagagtttaattgttttcgggcct 32884526



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 313      ctgcgaacattctggaacttcacatactttagcgtcacaggcttact 359
                |||||||||||||||||||| |||||||| |||  || |||||||||
Sbjct: 32884917 ctgcgaacattctggaacttgacatacttaagctgcataggcttact 32884871



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 382      aggtcaacactgtcacttggaggaaagtcattgacgttgctg 423
                ||||||| |||||||||||| ||| |||||||||| ||||||
Sbjct: 32884710 aggtcaagactgtcacttggtggatagtcattgacattgctg 32884669



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 283      ctttgattgtcttcaataaacatagtcaggctg 315
                ||||||||||| |||||||| ||||||||||||
Sbjct: 32885034 ctttgattgtcctcaataaatatagtcaggctg 32885002
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>ref|NM_111350.2| Arabidopsis thaliana unknown protein AT3G04780 mRNA, complete cds
          Length = 808

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                       
Query: 392 tgtcacttggaggaaagtcattgacgttgctgaaacccatatgctctctgttggagaaga 451
           |||| ||||||||||| |||||||| |||||||| | ||| |||||| |||| ||||| |
Sbjct: 405 tgtcgcttggaggaaaatcattgacattgctgaagcacatgtgctctttgtttgagaaaa 346

                                                  
Query: 452 gtttaactgtctttgggccttcctcctcggggcctttga 490
             || || || || || |||||||| || ||||||||||
Sbjct: 345 actttacagttttaggaccttcctcttcagggcctttga 307
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>gb|AY093713.1| Arabidopsis thaliana AT3g04780/F7O18_27 mRNA, complete cds
          Length = 531

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                       
Query: 392 tgtcacttggaggaaagtcattgacgttgctgaaacccatatgctctctgttggagaaga 451
           |||| ||||||||||| |||||||| |||||||| | ||| |||||| |||| ||||| |
Sbjct: 328 tgtcgcttggaggaaaatcattgacattgctgaagcacatgtgctctttgtttgagaaaa 269

                                                  
Query: 452 gtttaactgtctttgggccttcctcctcggggcctttga 490
             || || || || || |||||||| || ||||||||||
Sbjct: 268 actttacagttttaggaccttcctcttcagggcctttga 230
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>gb|AY058116.1| Arabidopsis thaliana AT3g04780/F7O18_27 mRNA, complete cds
          Length = 782

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                       
Query: 392 tgtcacttggaggaaagtcattgacgttgctgaaacccatatgctctctgttggagaaga 451
           |||| ||||||||||| |||||||| |||||||| | ||| |||||| |||| ||||| |
Sbjct: 396 tgtcgcttggaggaaaatcattgacattgctgaagcacatgtgctctttgtttgagaaaa 337

                                                  
Query: 452 gtttaactgtctttgggccttcctcctcggggcctttga 490
             || || || || || |||||||| || ||||||||||
Sbjct: 336 actttacagttttaggaccttcctcttcagggcctttga 298
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>gb|AY088225.1| Arabidopsis thaliana clone 4427 mRNA, complete sequence
          Length = 791

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                       
Query: 392 tgtcacttggaggaaagtcattgacgttgctgaaacccatatgctctctgttggagaaga 451
           |||| ||||||||||| |||||||| |||||||| | ||| |||||| |||| ||||| |
Sbjct: 405 tgtcgcttggaggaaaatcattgacattgctgaagcacatgtgctctttgtttgagaaaa 346

                                                  
Query: 452 gtttaactgtctttgggccttcctcctcggggcctttga 490
             || || || || || |||||||| || ||||||||||
Sbjct: 345 actttacagttttaggaccttcctcttcagggcctttga 307
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>gb|BT018546.1| Zea mays clone EL01N0438C08.d mRNA sequence
          Length = 1776

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 593 cctgcttgagcgcgttggcgatgccgtggg 622
           ||||||||||||||||| |||||| |||||
Sbjct: 426 cctgcttgagcgcgttgacgatgctgtggg 397
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>emb|CR932058.7| Zebrafish DNA sequence from clone DKEY-22M14 in linkage group 11,
              complete sequence
          Length = 151285

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 123    agcatcaaccacaacagttaactgtttaca 152
              ||||||||| |||||||| |||||||||||
Sbjct: 128922 agcatcaacaacaacagtgaactgtttaca 128893
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>gb|AC008368.21| Trypanosoma brucei chromosome 2 clone RPCI93-1F7, complete sequence
          Length = 150968

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    ttacacccactggaaacacac 168
              |||||||||||||||||||||
Sbjct: 131383 ttacacccactggaaacacac 131363
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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 148     ttacacccactggaaacacac 168
               |||||||||||||||||||||
Sbjct: 1072181 ttacacccactggaaacacac 1072161
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>gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome 13, complete sequence
          Length = 235237

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 395   cacttggaggaaagtcattga 415
             |||||||||||||||||||||
Sbjct: 26642 cacttggaggaaagtcattga 26622
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>gb|BT012861.1| Lycopersicon esculentum clone 113949F, mRNA sequence
          Length = 798

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 285 ttgattgtcttcaataaacatagtcaggctgcgaacattctggaacttcacatactt 341
           |||||| || |||||||| || ||||  ||||||||||| || ||||| ||||||||
Sbjct: 491 ttgattatcctcaataaaaatggtcacactgcgaacattttgaaacttgacatactt 435
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>ref|XM_946639.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.5890)
           partial mRNA
          Length = 1359

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 148 ttacacccactggaaacacac 168
           |||||||||||||||||||||
Sbjct: 376 ttacacccactggaaacacac 356
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>emb|AL359739.8| Human DNA sequence from clone RP11-243M12 on chromosome 1 Contains a
              ribosomal protein S20 (RPS20) pseudogene, complete sequence
          Length = 170284

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     tgtgtaaaataggggcacaaagttg 120
              ||||||||||| |||||||||||||
Sbjct: 162305 tgtgtaaaatatgggcacaaagttg 162329
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>emb|BX883052.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 11/11
          Length = 349381

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     aaatacctcatgtgtaaaata 106
              |||||||||||||||||||||
Sbjct: 241142 aaatacctcatgtgtaaaata 241122
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>emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-510H6, complete sequence
          Length = 188516

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 51    gaaattgcagcctacaggaggctaa 75
             ||||||||||||| |||||||||||
Sbjct: 62527 gaaattgcagccttcaggaggctaa 62503
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>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a zinc
              finger protein pseudogene, a chaperonin subunit 7 (eta)
              (Cct7) pseudogene, a novel pseudogene and a CpG island,
              complete sequence
          Length = 217352

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    cttctatcttcttcaggtcct 214
              |||||||||||||||||||||
Sbjct: 149287 cttctatcttcttcaggtcct 149307
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 385    tcaacactgtcacttggaggaaagt 409
              |||||||||||||| ||||||||||
Sbjct: 124456 tcaacactgtcactgggaggaaagt 124432
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>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence
          Length = 169944

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 385   tcaacactgtcacttggaggaaagt 409
             |||||||||||||| ||||||||||
Sbjct: 26331 tcaacactgtcactgggaggaaagt 26307
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>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence
          Length = 177522

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 387   aacactgtcacttggaggaaagtca 411
             |||||||||| ||||||||||||||
Sbjct: 49226 aacactgtcatttggaggaaagtca 49202
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 600     gagcgcgttggcgatgccgtg 620
               |||||||||||||||||||||
Sbjct: 2482953 gagcgcgttggcgatgccgtg 2482933
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>gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosome 13, complete
             sequence
          Length = 214193

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   cacttggaggaaagtcattga 415
             |||||||||||||||||||||
Sbjct: 62029 cacttggaggaaagtcattga 62049
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 467    ggccttcctcctcggggcctt 487
              |||||||||||||||||||||
Sbjct: 798522 ggccttcctcctcggggcctt 798542
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 467    ggccttcctcctcggggcctt 487
              |||||||||||||||||||||
Sbjct: 469602 ggccttcctcctcggggcctt 469622
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>gb|AC152002.2| Ornithorhynchus anatinus chromosome UNK clone OABb-387A1, complete
             sequence
          Length = 131214

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    tacctcatgtgtaaaataggg 109
             |||||||||||||||||||||
Sbjct: 72231 tacctcatgtgtaaaataggg 72211
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>ref|NM_117235.3| Arabidopsis thaliana AT-HSFB2B; transcription factor AT4G11660
           (AT-HSFB2B) mRNA, complete cds
          Length = 1988

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 gaacattctggaacttcaca 336
           ||||||||||||||||||||
Sbjct: 46  gaacattctggaacttcaca 65
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>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
             complete sequence
          Length = 95310

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 392   tgtcacttggaggaaagtcattgacgttgctg 423
             |||| ||||||||||| |||||||| ||||||
Sbjct: 90331 tgtcgcttggaggaaaatcattgacattgctg 90362
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>ref|XM_650880.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (19.t00027) partial mRNA
          Length = 6969

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 cttaatgttcttctatcttc 204
           ||||||||||||||||||||
Sbjct: 668 cttaatgttcttctatcttc 649
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>gb|AC108820.13| Mus musculus chromosome 8, clone RP23-10I8, complete sequence
          Length = 227289

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   tggaacttcacatactttag 344
             ||||||||||||||||||||
Sbjct: 59437 tggaacttcacatactttag 59418
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>emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in linkage group 3, complete
              sequence
          Length = 194804

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    ctttccagtaaatggctgga 377
              ||||||||||||||||||||
Sbjct: 169174 ctttccagtaaatggctgga 169193
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>emb|AL691473.9| Human DNA sequence from clone RP11-466L17 on chromosome 1 Contains
            part of a novel gene, complete sequence
          Length = 46120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cctcatgtgtaaaatagggg 110
            ||||||||||||||||||||
Sbjct: 7433 cctcatgtgtaaaatagggg 7452
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>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2
             Contains GSSs and STSs, complete sequence
          Length = 125698

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    acctcatgtgtaaaataggg 109
             ||||||||||||||||||||
Sbjct: 34402 acctcatgtgtaaaataggg 34421
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>emb|X89107.1|RAMADSP1 R.acetosa mRNA for regulatory protein P1
          Length = 1120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 ttcttcaggtccttcatatt 221
           ||||||||||||||||||||
Sbjct: 524 ttcttcaggtccttcatatt 505
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>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32
          Length = 198788

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   gaacattctggaacttcaca 336
             ||||||||||||||||||||
Sbjct: 93613 gaacattctggaacttcaca 93632
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>emb|AL049500.1|ATT5C23 Arabidopsis thaliana DNA chromosome 4, BAC clone T5C23 (ESSA project)
          Length = 87104

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   gaacattctggaacttcaca 336
             ||||||||||||||||||||
Sbjct: 36449 gaacattctggaacttcaca 36468
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>gb|AY093206.1| Arabidopsis thaliana heat shock transcription factor-like protein
           (At4g11660) mRNA, complete cds
          Length = 1961

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 gaacattctggaacttcaca 336
           ||||||||||||||||||||
Sbjct: 19  gaacattctggaacttcaca 38
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>ref|NM_079738.2| Drosophila melanogaster DNA polymerase CG6768-RA (DNApol-epsilon),
            mRNA
          Length = 6791

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggggcacaaagttgccagc 125
            ||||||||||||||||||||
Sbjct: 6596 aggggcacaaagttgccagc 6577
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>gb|AY061620.1| Drosophila melanogaster SD09005 full length cDNA
          Length = 2250

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggggcacaaagttgccagc 125
            ||||||||||||||||||||
Sbjct: 2042 aggggcacaaagttgccagc 2023
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>gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosome 14, complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    atcttcttcaggtccttcat 218
              ||||||||||||||||||||
Sbjct: 114091 atcttcttcaggtccttcat 114072
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>emb|BX827353.1|CNS0A2D6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS43ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1971

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 gaacattctggaacttcaca 336
           ||||||||||||||||||||
Sbjct: 49  gaacattctggaacttcaca 68
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>gb|AC010670.8|AC010670 Drosophila melanogaster, chromosome 3R, region 94E-95A, BAC clone
              BACR01E13, complete sequence
          Length = 155957

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aggggcacaaagttgccagc 125
              ||||||||||||||||||||
Sbjct: 131540 aggggcacaaagttgccagc 131521
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>gb|DQ000003.1| Schistosoma japonicum hypothetical protein (1UE12) mRNA, complete
           cds
          Length = 373

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 117 gttgccagcatcaaccacaa 136
           ||||||||||||||||||||
Sbjct: 105 gttgccagcatcaaccacaa 86
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>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete
             sequence
          Length = 93234

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 392   tgtcacttggaggaaagtcattgacgttgctg 423
             |||| ||||||||||| |||||||| ||||||
Sbjct: 92967 tgtcgcttggaggaaaatcattgacattgctg 92936
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>gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, complete sequence
          Length = 161975

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 307   gtcaggctgcgaacattctggaac 330
             ||||||||||||||| ||||||||
Sbjct: 70606 gtcaggctgcgaacactctggaac 70583
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>gb|BC084400.1| Xenopus laevis neurofilament protein, mRNA (cDNA clone IMAGE:6958507)
          Length = 1648

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   agaaattgcagcctacagga 69
            ||||||||||||||||||||
Sbjct: 1145 agaaattgcagcctacagga 1164
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>gb|AE003743.3| Drosophila melanogaster chromosome 3R, section 81 of 118 of the
            complete sequence
          Length = 210258

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggggcacaaagttgccagc 125
            ||||||||||||||||||||
Sbjct: 7831 aggggcacaaagttgccagc 7812
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>emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 in linkage group 5,
             complete sequence
          Length = 153980

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ctttccagtaaatggctgga 377
             ||||||||||||||||||||
Sbjct: 42489 ctttccagtaaatggctgga 42470
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 603     cgcgttggcgatgccgtggg 622
               ||||||||||||||||||||
Sbjct: 2399232 cgcgttggcgatgccgtggg 2399251
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>gb|M86654.1|XELLMWNP Xenopus laevis low molecular weight neurofilament protein (XNF-L)
            mRNA, complete cds
          Length = 2111

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   agaaattgcagcctacagga 69
            ||||||||||||||||||||
Sbjct: 1142 agaaattgcagcctacagga 1161
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>gb|U28484.1|RAU28484 Rumex acetosa MADS box regulatory protein (RaD2) mRNA, complete cds
          Length = 1120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 ttcttcaggtccttcatatt 221
           ||||||||||||||||||||
Sbjct: 524 ttcttcaggtccttcatatt 505
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>emb|AL845256.3| Mouse DNA sequence from clone RP23-58M18 on chromosome X, complete
            sequence
          Length = 171398

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  tatcttcttcaggtccttca 217
            ||||||||||||||||||||
Sbjct: 3670 tatcttcttcaggtccttca 3689
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>emb|AL645699.1| Human DNA sequence from clone RP5-1070D5 on chromosome 1, complete
            sequence
          Length = 40181

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cctcatgtgtaaaatagggg 110
            ||||||||||||||||||||
Sbjct: 7435 cctcatgtgtaaaatagggg 7454
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>dbj|AB035512.1| Drosophila melanogaster dPOLE gene for DNA polymerase epsilon,
            complete cds
          Length = 9064

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggggcacaaagttgccagc 125
            ||||||||||||||||||||
Sbjct: 7935 aggggcacaaagttgccagc 7916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,467,830
Number of Sequences: 3902068
Number of extensions: 5467830
Number of successful extensions: 101697
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101323
Number of HSP's gapped (non-prelim): 374
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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