ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25l11 |
|---|---|
| Clone Library Name | barley_pub |
>VE1_MNPV (Q84356) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 602 Score = 32.7 bits (73), Expect = 0.62 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +3 Query: 18 YRTPRQYPCTLVLVPT*RDIHIETKLRGVAWRRFLSRIAVATVHDYRPXCGHYISQFDDA 197 YRTP Q C +LV T D+H+ + WR SRI V + + P ++ + Sbjct: 503 YRTPVQVKCPPMLVTTNEDVHLNDR-----WRYLHSRIQVFHLKEPMPIDTAGNPEYSFS 557 Query: 198 DADWSKAFATL 230 + W F L Sbjct: 558 NRHWKAFFEKL 568
>RPOB1_NOCFA (Q5YQP4) DNA-directed RNA polymerase beta chain 1 (EC 2.7.7.6)| (RNAP beta subunit 1) (Transcriptase beta chain 1) (RNA polymerase beta subunit 1) Length = 1162 Score = 30.8 bits (68), Expect = 2.4 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = +2 Query: 260 VGQPIGLPGLIDVLLAQEAWLVG------RRQQPRPHPVSDLHLVPCGCHPIERYIGMSA 421 + +P+ +PGL+D+ WL+G R PV+ L V PIE + G + Sbjct: 34 IREPLAVPGLLDIQTESFGWLIGAPDWCARAAARGTEPVAGLAEVLAEISPIEDFAGTMS 93 Query: 422 I 424 + Sbjct: 94 L 94
>RPOB2_MYCSM (P60281) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 30.4 bits (67), Expect = 3.1 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +2 Query: 266 QPIGLPGLIDVLLAQEAWLVGRRQ-------QPRPHPVSDLHLVPCGCHPIERYIGMSAI 424 +P+ +PGL+DV WLVG + + +PV L V PIE + G ++ Sbjct: 37 EPLEVPGLLDVQTDSFEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSL 96 Query: 425 DHPNSR 442 + R Sbjct: 97 SFSDPR 102
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 30.0 bits (66), Expect = 4.0 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Frame = +1 Query: 178 SHSSTTPTQIGQRRSPHCGWRQMAAAACWPAYRPPWPHRCPSGSGSLAGWSTTAASPTSG 357 S + TPT + P GW C P WP P+ + S A ++T SP+S Sbjct: 64 STHTPTPTPPSGKSCPPNGWYWNDEKTCC---LPKWPTSTPTPTPSSAHHTSTHTSPSST 120 Query: 358 Q*SSPCSVWMSPYRKVYRHVCH*PSQ--------Q*SCIPPLHHGWHCEPAMCSRHCP 507 S+P + + + +C PS + S P +G H + A +R P Sbjct: 121 PTSTPPPQCSNGWDWISSLLCCTPSSPSKPSSTPKPSATPNKGNGHHYKRAHVARAVP 178
>RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 30.0 bits (66), Expect = 4.0 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 260 VGQPIGLPGLIDVLLAQEAWLVG 328 + +PI +PGL+D+ L AWL+G Sbjct: 40 ITEPIEVPGLLDIQLNSFAWLIG 62
>KITH_ENCCU (O96720) Thymidine kinase (EC 2.7.1.21)| Length = 212 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 278 LPGLIDVLLAQEAWLVGRRQQPRPHPVSDLHLVPCGCH 391 L G +D+LL EA + RQ V+D+H +P C+ Sbjct: 76 LYGDVDILLVDEAQFLSSRQIDELREVADVHGIPVWCY 113
>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)| Length = 326 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = +1 Query: 148 TITDXAAVTISHSSTTPTQIGQRRSPHCGWRQMAAAACWPAYRPPWPHRCPSGSGSLAGW 327 T T TISH++ +PT G SP ++ P PP P P G+L + Sbjct: 78 TTTSHGNATISHATVSPTTNGTATSPR-------SSTVGPHPGPPPPSPSPRSKGALGNY 130 Query: 328 S 330 + Sbjct: 131 T 131
>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1842 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 146 YSSYCYPAEKPAPRHATQFCFDMD 75 YS +CYP K A ATQ C D+D Sbjct: 901 YSCFCYPGYKLATSGATQECQDID 924
>RPOB1_MYCSM (Q50388) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +2 Query: 266 QPIGLPGLIDVLLAQEAWLVGRRQ-------QPRPHPVSDLHLVPCGCHPIERYIGMSAI 424 +P+ + GL+DV WLVG R+ + +PV L V PIE + G ++ Sbjct: 37 EPLEVRGLLDVQTDSFEWLVGSRRVRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSL 96 Query: 425 DHPNSR 442 + R Sbjct: 97 SFSDPR 102
>CAN10_RAT (Q9ES66) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Frame = +2 Query: 227 IVVGDRWQRRLVGQ----------PIGLPGLIDVLLAQEAWLVGRRQQPRPHPVSDLHLV 376 + V R +RRLVGQ P+ LPG + W V +R+ P +S + Sbjct: 379 VAVLQRPRRRLVGQTRALAGASPAPVNLPGKDYQAVGLHIWKVEKRKISLPRVLSAPPVA 438 Query: 377 PCGCHPIERYI 409 CH +R I Sbjct: 439 GTACHAYDREI 449
>CAN10_MOUSE (Q9ESK3) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Frame = +2 Query: 227 IVVGDRWQRRLVGQ----------PIGLPGLIDVLLAQEAWLVGRRQQPRPHPVSDLHLV 376 + V R +RRLVGQ P+ LPG + W V +R+ P +S + Sbjct: 379 VAVLQRPRRRLVGQTRALAGASPAPVNLPGKDYQAVGLHIWKVEKRKISLPRVLSAPPVA 438 Query: 377 PCGCHPIERYI 409 CH +R I Sbjct: 439 GTACHAYDREI 449
>RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1171 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 242 RWQRRLVGQPIGLPGLIDVLLAQEAWLVG 328 R+ V PI +PGL+D+ L AWL+G Sbjct: 31 RYSFAKVSAPIEVPGLLDLQLDSFAWLIG 59
>RPOB_MYCTU (P0A680) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +2 Query: 266 QPIGLPGLIDVLLAQEAWLVG-------RRQQPRPHPVSDLHLVPCGCHPIERYIGMSAI 424 +P+ +PGL+DV WL+G ++ +PV L V PIE + G ++ Sbjct: 46 EPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSL 105 Query: 425 DHPNSR 442 + R Sbjct: 106 SFSDPR 111
>RPOB_MYCBO (P0A681) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +2 Query: 266 QPIGLPGLIDVLLAQEAWLVG-------RRQQPRPHPVSDLHLVPCGCHPIERYIGMSAI 424 +P+ +PGL+DV WL+G ++ +PV L V PIE + G ++ Sbjct: 46 EPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSL 105 Query: 425 DHPNSR 442 + R Sbjct: 106 SFSDPR 111
>RPOB_CORGL (Q8NT26) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 242 RWQRRLVGQPIGLPGLIDVLLAQEAWLVG 328 R+ V PI +PGL+D+ L +WL+G Sbjct: 25 RYSFAKVSAPIEVPGLLDLQLDSYSWLIG 53
>RPOB_AMYMD (Q9L637) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1167 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Frame = +2 Query: 260 VGQPIGLPGLIDVLL-------AQEAWLVGRRQQPRPHPVSDLHLVPCGCHPIERYIGMS 418 + +P+ P L+DV + EAW R ++ +PV L V PIE + G Sbjct: 37 IREPLNTPNLLDVQIQSFQWFTGDEAWFQRRVEEGEENPVGGLEEVLNEISPIEDFSGSM 96 Query: 419 AI 424 ++ Sbjct: 97 SL 98
>AGT22_ARATH (Q94AL9) Alanine--glyoxylate aminotransferase 2 homolog 2,| mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 2) Length = 477 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 394 RVTSTRNKVKITDRMWARLLSSTNQPSFLSQKDIDE 287 R + R+ I+ +W R +SST+Q + S KD DE Sbjct: 3 RFAAKRSVQNISVSLWRRCISSTSQAATASVKDSDE 38
>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1856 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/94 (19%), Positives = 40/94 (42%) Frame = -2 Query: 310 LSQKDIDEAREADRLANKPPLPSVANHNVANAFDQSASASSNCEI**PQXGL*SCTVATA 131 + + DID ++ L+ P P V +++ D + + L C + + Sbjct: 1347 VGKDDIDNSKAGAGLSRPSPSPLVNQYSLTVGLDLGPHDTKS---------LLKCVESLS 1397 Query: 130 ILLRNLRHATPRSFVSIWMSLYVGTSTNVHGYCR 29 ++R+ H TP +F +L + +++G C+ Sbjct: 1398 FIVRDAAHITPDNFELCVKTLRIFVEASLNGGCK 1431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,254,088 Number of Sequences: 219361 Number of extensions: 1747248 Number of successful extensions: 5104 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4887 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5096 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
