>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)|
          Length = 674

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 9/43 (20%)
 Frame = +2

Query: 410 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 511
           L GA +L  W + W+L         +FPV PP    S+ECLP+
Sbjct: 275 LCGAFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPK 317

>WISP2_RAT (Q9JHC6) WNT1-inducible signaling pathway protein 2 precursor|
           (WISP-2) (Connective tissue growth factor-like protein)
           (CTGF-L) (CCN family protein COP-1)
          Length = 250

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 447 QGIQTSSTRAPVRRCGLRGGTTPTGSSPSWRSWTRGWVPCRTSRG 313
           QG+  +  R+  +   L    TP  +   W +W+  W PC T+ G
Sbjct: 165 QGVTPAIQRSAAQGHQLSALVTPASADAPWPNWSTAWGPCSTTCG 209

>REV_HV1C4 (P05865) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           RR+H I    LS  +GRS E        PVPL    +ER  +  +       +  +GSP 
Sbjct: 50  RRIHSISAWLLSTCLGRSAE--------PVPLQLPPLERLTLDCSEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 102 ILVESPAVL 110

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 432  SSTRAPVRRCGLRGGTTPTGSSPSWRSWTRGWVPCRTSRGNQSPT 298
            S +R+PVRR G     +P+ S  S RS +R   PCR+    ++PT
Sbjct: 894  SRSRSPVRRVGYSRSRSPSVSGGSSRSPSRS--PCRSPNKGRAPT 936

>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)|
          Length = 674

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
 Frame = +2

Query: 410 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 511
           L G  +L  W + W+L         +FPV PP    S+ECLP+
Sbjct: 275 LCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPK 317

>ATK4_ARATH (O81635) Kinesin-4 (Kinesin-like protein D)|
          Length = 987

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
 Frame = -1

Query: 601  GTRVGNDSTSGSTENKKG--DYMSSSSRSTEALWQAFFANPLDWWDNRKDKKNPRYPDFK 428
            G    NDST+ S  +     + M SSS        A+   PL+  D  ++ K+  + D K
Sbjct: 804  GPEAFNDSTASSRRHSLDIHELMKSSS-------PAWPRQPLNGKDEDRESKSGEWID-K 855

Query: 427  HKSTGEALWVEGRNNPN-WVVSQLAILDSRMGSLQDKQRKPVSYMYADDFMTSDASD*AL 251
            H+   E +  +  N+P  +  S +    S  G  QD + + ++   +D+  TSD SD  L
Sbjct: 856  HE---ELIQNQNPNSPEQFYQSMVPQQQSLYGGKQDFEVQSITDNESDEAATSDCSDSDL 912

Query: 250  L*EGVRKLLIPQVS 209
            L     ++ +P+VS
Sbjct: 913  LWRLSVQVNVPKVS 926

>NDC1_RAT (Q6AXN4) Nucleoporin NDC1 (Transmembrane protein 48)|
          Length = 673

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
 Frame = +2

Query: 410 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 511
           L G  +L  W I W+L         +FPV PP    S+ECLP+
Sbjct: 276 LCGVFLLMTWYISWILFKIYATEAYMFPVQPPFAEESDECLPK 318

>FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 389

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 423 RAPVRRCG---LRGGTTPTGSSPSWRSWTR-GWVPCRTSRGNQSP 301
           R  VRRC    L  G      SP WR+  R GW  CR SR  + P
Sbjct: 2   RVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKP 46

>REV_HV1BR (P04620) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 102 ILVESPTVL 110

>REV_HV1B1 (P04616) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 102 ILVESPTVL 110

>REV_HV1B8 (P05864) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 40  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 91

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 92  ILVESPTVL 100

>NDC1_MOUSE (Q8VCB1) Nucleoporin NDC1 (Transmembrane protein 48)|
          Length = 673

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
 Frame = +2

Query: 410 LTGALVLEVWIP-WVLL--------IFPVIPPVKRISEECLPQ 511
           L G  +L  W   W+L         +FPV PP    S+ECLP+
Sbjct: 276 LCGVFLLVTWYSSWILFKIYATEAHVFPVQPPFAEASDECLPK 318

>REV_HV1PV (P69719) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP++L
Sbjct: 102 ILVESPTIL 110

>REV_HV1H3 (P69718) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP++L
Sbjct: 102 ILVESPTIL 110

>REV_HV112 (P04325) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP++L
Sbjct: 102 ILVESPTIL 110

>ATPG_CORGL (Q79VG6) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 325

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 556 KKG-DYMSSSSRSTEALWQAFFANPLDWWDNRKDKKNPRYPDFKHKSTGEALWVEGRNNP 380
           KKG DY    +      W  F  +P DW      +++     F   S GEA W EG N P
Sbjct: 120 KKGVDYYKFRAEDVAGTWTGFSQDP-DWAATHNVRRH-LIDGFTASSEGEAAWREGLNLP 177

>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = -2

Query: 411 RRCGLRGGTTPTGSSPSWRSWTRGWV--PCRTSRGN------QSPTCMPTTS*HLMPATK 256
           R C L  G+ PT   PS RSW+ G V  P   S  +       S T    TS  L PAT 
Sbjct: 364 RACSL--GSEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTSTELAPATG 421

Query: 255 P 253
           P
Sbjct: 422 P 422

>REV_HV1LW (Q70624) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 118

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + LS  +GRS +        PVPL    +ER  +  N       +  +GSP 
Sbjct: 52  RQIHSISERILSTYLGRSAK--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 103

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 104 ILVESPTVL 112

>REV_HV1H2 (P04618) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 290 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 111
           R++H I  + L   +GRS E        PVPL    +ER  +  N       +  +GSP 
Sbjct: 50  RQIHSISERILGTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101

Query: 110 KLI-SPSVL 87
            L+ SP+VL
Sbjct: 102 ILVESPTVL 110

>ARAN_BACSU (P94528) Probable arabinose-binding protein precursor|
          Length = 433

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 544 YMSSSSRSTEALWQAFFANPLDW--WDNRKDKKNPRYPDFKHKSTG 413
           +   S    + LW     +PL W  W +++ K+  +Y D+    TG
Sbjct: 330 FAKGSEEGNKKLWSVLGFDPLRWDVWSSKELKEKNKYTDYFQNGTG 375

>YIEE_ECOLI (P0ADM8) Hypothetical protein yieE|
          Length = 253

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 451 NPRYPDFKHKSTGEALWVEGRNNPNWVVSQLAIL 350
           +P  PD    S+ E+LW+  +N+PN   +QL  L
Sbjct: 118 SPHAPDNHTFSSNESLWISKQNDPNEARAQLITL 151

>YIEE_ECOL6 (P0ADM9) Hypothetical protein yieE|
          Length = 253

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 451 NPRYPDFKHKSTGEALWVEGRNNPNWVVSQLAIL 350
           +P  PD    S+ E+LW+  +N+PN   +QL  L
Sbjct: 118 SPHAPDNHTFSSNESLWISKQNDPNEARAQLITL 151

>CCA_HALSA (Q9HSP6) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 452

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 299 VGDWFPLLVLQGTHPRVQDRQLGDDPVGVVPPLNPQRLTGALV 427
           + DW P +V+    P    +   DDP+ VV P +P+R   A+V
Sbjct: 200 IEDWQPPVVID---PAAHQQASFDDPLVVVDPTDPERNVAAVV 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,511,089
Number of Sequences: 219361
Number of extensions: 1944664
Number of successful extensions: 5245
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5242
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)